Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0007057

Physical Location & Seq

Genomic Coordinates Reverse (-)

16303473 .. 16305968

Gene Structure 2496 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g19880.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGAGTGTTTTTTCAAAGGTGCTAATGAGGACTTGACGCCGTCTCCGGTAGACATTCTTCGGTGTCCATTCTTGAGGAACATTAATGAGCCCACCAATTTTTCCTTCTCCTCCATGTCTTCCATGGCTTTCCCTATGCCGGTACGTGCTGCCAGCAAAGGTCCAATTTTTGAGGATGGTCCCAATTTTGACATGGCATTTAAGCTTTTCCATGGGAGTGATGGAGTTGTCCCTCTCTCTGGACGATCGTATGAGAAAGTTGAGAAAGTTGAGCAACAACAAGCCCCATTCATGTTTAATCCATTAGCTGCAAGGGCAGCTACTATCAGCCTGTCATCCTTTGGACCTGGAGGACCCTTCGGTTTTGATGCATTCTCTGAGAAGTGGAAGAAAATGCAAAAGAAGTCCAATTCCTCGAAAAAAGGGTCTTCTTCAAAGGGAGGGAACTCTAATCATGAGGCAGCGAGTAATGAGTGGCTACAAAGTGGAAACTGTCCGATTGCAAAATCATTCCGTGCTGTTAGTGGTGTCGTTCCACTTGTGGCAAAGGCTTTGCAGCTCCCTCCAGGCATGAAAGTTAAGTGCCCACCAGCAATAGTTGCAGCTCGAGCAGCTCTGTCAAAAACTGCATTTGCAAAGAACCTCCGCCCACAACCCCTGCCTGCAAAAGTGCTTGTGATTGGAGCACTGGGAATGGCGGCCAATGTTCCATTAGGGATATGGAGAGAGCACACCAAGAAATTTTCTCCATCTTGGTTTGCTGCTGTGCATGCAGCAGTTCCATTCATAGCCGTACTTCGAAAGTCTGTGTTGATGCCTAAGTCAGCTATGGCGTTTACCATTGCAGCATCTATATTAGGACAGGTGATTGGGTCCAGAGCAGAGCGCTACCGTCTGAAGGCAAAGGCAACTAAAAACTTGGCTTTGACTGACACCTCTGTACAGATCATGAAGCCTGAAAGCTCTGTTGGTGGGATGAAAAGCCAGTTCCAGGTGGTTGAAGCGAAATCTGGTCATTGCACTGAGATTGAGGAGTGGAACTCAGTTGCTCTGCAGGTCTCACGCCCTTCTTCATCGACTGATGTGTTCTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

365

Amino Acids

39.1

Weight (kDa)

9.82

Isoelectric Point (pI)

50.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25030 AT4G25030
fragaria_vesca	FvH4_7g19880 FvH4_7g19880
malus_domestica	MD01G1110900.v1.1 MD05G1255700.v1.1 MD07G1177000.v1.1
prunus_persica	Prupe.2G215800_v2.0.a1
pyrus_communis	pycom01g13820 pycom07g17110
rosa_chinensis	RchiOBHm_Chr1g0363861
rosa_laevigata	RLG00000027540
rosa_multiflora	Rmu_co8207472.1_g000001 Rmu_sc0002483.1_g000002 Rmu_sc0041994.1_g000001
rosa_roxburghii	Rroxscaffold_4G00292910
rosa_rugosa	Rorug01G0310000 Rorug01G0310100 Rorug01G0310200 Rorug01G0310300
rosa_samantha	Rh1AG318400 Rh1BG281600 Rh1CG298000 Rh1DG312900
rosa_wichuraiana	Rw1G028260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1045
AccI	GTMKAC	1 cut(s)	51
AciI	CCGC	2 cut(s)	646, 698
AcoI	YGGCCR	1 cut(s)	699
AcsI	RAATTY	1 cut(s)	740
AcuI	CTGAAG	1 cut(s)	917
AcyI	GRCGYC	1 cut(s)	38
AfaI	GTAC	3 cut(s)	144, 795, 942
AfeI	AGCGCT	1 cut(s)	887
AfiI	CCNNNNNNNGG	4 cut(s)	139, 239, 898, 991
AgsI	TTSAA	3 cut(s)	16, 435, 1001
AjnI	CCWGG	3 cut(s)	346, 565, 990
AjuI	GAANNNNNNNTTGG	4 cut(s)	89, 121, 951, 983
AluBI	AGCT	8 cut(s)	205, 308, 320, 559, 605, 614, 827, 963
AluI	AGCT	8 cut(s)	205, 308, 320, 559, 605, 614, 827, 963
Alw21I	GWGCWC	2 cut(s)	688, 732
Alw26I	GTCTC	2 cut(s)	48, 1063
Ama87I	CYCGRG	1 cut(s)	606
Aor51HI	AGCGCT	1 cut(s)	887
AoxI	GGCC	1 cut(s)	699
ApoI	RAATTY	1 cut(s)	740
ArsI	GACNNNNNNTTYG	2 cut(s)	410, 442
AseI	ATTAAT	1 cut(s)	84
AspLEI	GCGC	1 cut(s)	888
AspS9I	GGNCC	5 cut(s)	161, 179, 344, 353, 873
AsuHPI	GGTGA	1 cut(s)	877
AsuII	TTCGAA	1 cut(s)	799
AvaI	CYCGRG	1 cut(s)	606
AvaII	GGWCC	5 cut(s)	161, 179, 344, 353, 873
BaeGI	GKGCMC	1 cut(s)	587
BanII	GRGCYC	1 cut(s)	93
BarI	GAAGNNNNNNTAC	2 cut(s)	42, 74
BbsI	GAAGAC	2 cut(s)	111, 420
Bbv12I	GWGCWC	2 cut(s)	688, 732
BccI	CCATC	3 cut(s)	170, 215, 757
BceAI	ACGGC	2 cut(s)	25, 776
BciT130I	CCWGG	3 cut(s)	348, 567, 992
BcoDI	GTCTC	2 cut(s)	48, 1063
BfmI	CTRYAG	1 cut(s)	1052
BfoI	RGCGCY	1 cut(s)	889
BfuAI	ACCTGC	1 cut(s)	1045
Bme1390I	CCNGG	3 cut(s)	348, 567, 992
Bme18I	GGWCC	5 cut(s)	161, 179, 344, 353, 873
BmeT110I	CYCGRG	1 cut(s)	606
BmgT120I	GGNCC	5 cut(s)	161, 179, 344, 353, 873
BmiI	GGNNCC	3 cut(s)	181, 355, 874
BmrFI	CCNGG	3 cut(s)	348, 567, 992
BmrI	ACTGGG	1 cut(s)	698
BmsI	GCATC	3 cut(s)	358, 804, 857
BmuI	ACTGGG	1 cut(s)	698
BpiI	GAAGAC	2 cut(s)	111, 420
BplI	GAGNNNNNCTC	2 cut(s)	1025, 1057
BpmI	CTGGAG	2 cut(s)	369, 549
Bpu14I	TTCGAA	1 cut(s)	799
BpuEI	CTTGAG	1 cut(s)	94
BsaAI	YACGTR	1 cut(s)	146
BsaHI	GRCGYC	1 cut(s)	38
BsaI	GGTCTC	1 cut(s)	1063
BsaJI	CCNNGG	2 cut(s)	123, 211
BsaWI	WCCGGW	1 cut(s)	46
BsaXI	ACNNNNNCTCC	2 cut(s)	28, 58
Bsc4I	CCNNNNNNNGG	4 cut(s)	139, 239, 898, 991
Bse118I	RCCGGY	1 cut(s)	139
Bse1I	ACTGG	2 cut(s)	693, 985
Bse3DI	GCAATG	2 cut(s)	840, 1015
BseBI	CCWGG	3 cut(s)	348, 567, 992
BseDI	CCNNGG	2 cut(s)	123, 211
BseGI	GGATG	3 cut(s)	181, 335, 981
BseLI	CCNNNNNNNGG	4 cut(s)	139, 239, 898, 991
BseMI	GCAATG	2 cut(s)	840, 1015
BseMII	CTCAG	3 cut(s)	369, 1014, 1056
BseNI	ACTGG	2 cut(s)	693, 985
BseRI	GAGGAG	2 cut(s)	100, 1046
BseSI	GKGCMC	1 cut(s)	587
Bsh1285I	CGRYCG	1 cut(s)	248
BshFI	GGCC	1 cut(s)	701
BsiEI	CGRYCG	1 cut(s)	248
BsiHKAI	GWGCWC	2 cut(s)	688, 732
BsiHKCI	CYCGRG	1 cut(s)	606
BsiSI	CCGG	2 cut(s)	47, 140
BslFI	GGGAC	2 cut(s)	165, 215
BslI	CCNNNNNNNGG	4 cut(s)	139, 239, 898, 991
BsmAI	GTCTC	2 cut(s)	48, 1063
BsmBI	CGTCTC	1 cut(s)	48
BsmFI	GGGAC	2 cut(s)	165, 215
BsmI	GAATGC	1 cut(s)	371
BsnI	GGCC	1 cut(s)	701
Bso31I	GGTCTC	1 cut(s)	1063
BsoBI	CYCGRG	1 cut(s)	606
Bsp119I	TTCGAA	1 cut(s)	799
Bsp1286I	GDGCHC	4 cut(s)	93, 587, 688, 732
Bsp1407I	TGTACA	1 cut(s)	940
Bsp143I	GATC	2 cut(s)	245, 945
Bsp19I	CCATGG	2 cut(s)	123, 211
BspACI	CCGC	2 cut(s)	646, 698
BspANI	GGCC	1 cut(s)	701
BspCNI	CTCAG	3 cut(s)	370, 1015, 1055
BspHI	TCATGA	2 cut(s)	454, 948
BspLI	GGNNCC	3 cut(s)	181, 355, 874
BspMAI	CTGCAG	1 cut(s)	1056
BspMI	ACCTGC	1 cut(s)	1045
BspT104I	TTCGAA	1 cut(s)	799
BspTNI	GGTCTC	1 cut(s)	1063
BsrDI	GCAATG	2 cut(s)	840, 1015
BsrFI	RCCGGY	1 cut(s)	139
BsrGI	TGTACA	1 cut(s)	940
BsrI	ACTGG	2 cut(s)	693, 985
BssAI	RCCGGY	1 cut(s)	139
BssECI	CCNNGG	2 cut(s)	123, 211
BssMI	GATC	2 cut(s)	245, 945
BssNI	GRCGYC	1 cut(s)	38
BssT1I	CCWWGG	2 cut(s)	123, 211
Bst2UI	CCWGG	3 cut(s)	348, 567, 992
Bst4CI	ACNGT	2 cut(s)	494, 893
BstACI	GRCGYC	1 cut(s)	38
BstAPI	GCANNNNNTGC	1 cut(s)	599
BstAUI	TGTACA	1 cut(s)	940
BstBAI	YACGTR	1 cut(s)	146
BstBI	TTCGAA	1 cut(s)	799
BstC8I	GCNNGC	3 cut(s)	154, 663, 771
BstDEI	CTNAG	4 cut(s)	378, 819, 1023, 1042
BstDSI	CCRYGG	2 cut(s)	123, 211
BstF5I	GGATG	3 cut(s)	181, 335, 981
BstH2I	RGCGCY	1 cut(s)	889
BstHHI	GCGC	1 cut(s)	888
BstKTI	GATC	2 cut(s)	248, 948
BstMAI	GTCTC	2 cut(s)	48, 1063
BstMBI	GATC	2 cut(s)	245, 945
BstMCI	CGRYCG	1 cut(s)	248
BstMWI	GCNNNNNNNGC	6 cut(s)	314, 317, 599, 608, 611, 770
BstNI	CCWGG	3 cut(s)	348, 567, 992
BstNSI	RCATGY	1 cut(s)	773
BstSCI	CCNGG	3 cut(s)	346, 565, 990
BstSFI	CTRYAG	1 cut(s)	1052
BstSLI	GKGCMC	1 cut(s)	587
BstV2I	GAAGAC	2 cut(s)	111, 420
BsuRI	GGCC	1 cut(s)	701
BtgI	CCRYGG	2 cut(s)	123, 211
BtsCI	GGATG	3 cut(s)	181, 335, 981
BtsIMutI	CAGTG	2 cut(s)	686, 1020
BveI	ACCTGC	1 cut(s)	1045
Cac8I	GCNNGC	3 cut(s)	154, 663, 771
CciI	TCATGA	2 cut(s)	454, 948
CfoI	GCGC	1 cut(s)	888
Cfr10I	RCCGGY	1 cut(s)	139
Cfr13I	GGNCC	5 cut(s)	161, 179, 344, 353, 873
CseI	GACGC	1 cut(s)	46
Csp6I	GTAC	3 cut(s)	143, 794, 941
CviAII	CATG	9 cut(s)	115, 124, 193, 212, 292, 455, 571, 770, 949
CviQI	GTAC	3 cut(s)	143, 794, 941
DdeI	CTNAG	4 cut(s)	378, 819, 1023, 1042
DpnI	GATC	2 cut(s)	247, 947
DpnII	GATC	2 cut(s)	245, 945
EaeI	YGGCCR	1 cut(s)	699
EciI	GGCGGA	1 cut(s)	635
Eco130I	CCWWGG	2 cut(s)	123, 211
Eco24I	GRGCYC	1 cut(s)	93
Eco31I	GGTCTC	1 cut(s)	1063
Eco47I	GGWCC	5 cut(s)	161, 179, 344, 353, 873
Eco47III	AGCGCT	1 cut(s)	887
Eco57I	CTGAAG	1 cut(s)	917
Eco88I	CYCGRG	1 cut(s)	606
EcoO109I	RGGNCCY	1 cut(s)	353
EcoRII	CCWGG	3 cut(s)	346, 565, 990
EcoT14I	CCWWGG	2 cut(s)	123, 211
EcoT22I	ATGCAT	1 cut(s)	373
EcoT38I	GRGCYC	1 cut(s)	93
ErhI	CCWWGG	2 cut(s)	123, 211
Esp3I	CGTCTC	1 cut(s)	48
FaeI	CATG	9 cut(s)	118, 127, 196, 215, 295, 458, 574, 773, 952
FaqI	GGGAC	2 cut(s)	165, 215
FatI	CATG	9 cut(s)	114, 123, 192, 211, 291, 454, 570, 769, 948
FblI	GTMKAC	1 cut(s)	51
FokI	GGATG	3 cut(s)	188, 322, 988
FriOI	GRGCYC	1 cut(s)	93
GlaI	GCGC	1 cut(s)	887
GsuI	CTGGAG	2 cut(s)	369, 549
HaeII	RGCGCY	1 cut(s)	889
HaeIII	GGCC	1 cut(s)	701
HapII	CCGG	2 cut(s)	47, 140
HgaI	GACGC	1 cut(s)	46
HhaI	GCGC	1 cut(s)	888
Hin1I	GRCGYC	1 cut(s)	38
Hin1II	CATG	9 cut(s)	118, 127, 196, 215, 295, 458, 574, 773, 952
Hin6I	GCGC	1 cut(s)	886
HinP1I	GCGC	1 cut(s)	886
HindIII	AAGCTT	1 cut(s)	203
HpaII	CCGG	2 cut(s)	47, 140
HphI	GGTGA	1 cut(s)	877
Hpy166II	GTNNAC	2 cut(s)	52, 837
Hpy188I	TCNGA	3 cut(s)	379, 498, 897
Hpy188III	TCNNGA	5 cut(s)	73, 240, 455, 876, 949
Hpy8I	GTNNAC	2 cut(s)	52, 837
HpyAV	CCTTC	4 cut(s)	115, 367, 892, 1077
HpyCH4III	ACNGT	2 cut(s)	494, 893
HpyCH4IV	ACGT	1 cut(s)	145
HpyF10VI	GCNNNNNNNGC	6 cut(s)	314, 317, 599, 608, 611, 770
HpyF3I	CTNAG	4 cut(s)	378, 819, 1023, 1042
HpySE526I	ACGT	1 cut(s)	145
Hsp92I	GRCGYC	1 cut(s)	38
Hsp92II	CATG	9 cut(s)	118, 127, 196, 215, 295, 458, 574, 773, 952
HspAI	GCGC	1 cut(s)	886
Kzo9I	GATC	2 cut(s)	245, 945
LmnI	GCTCC	2 cut(s)	564, 683
LweI	GCATC	3 cut(s)	358, 804, 857
MaeII	ACGT	1 cut(s)	145
MalI	GATC	2 cut(s)	247, 947
MboI	GATC	2 cut(s)	245, 945
MboII	GAAGA	6 cut(s)	50, 111, 400, 420, 423, 1062
MhlI	GDGCHC	4 cut(s)	93, 587, 688, 732
MluCI	AATT	5 cut(s)	97, 165, 184, 409, 740
Mph1103I	ATGCAT	1 cut(s)	373
MseI	TTAA	4 cut(s)	84, 201, 297, 579
MslI	CAYNNNNRTG	1 cut(s)	216
MspI	CCGG	2 cut(s)	47, 140
MspR9I	CCNGG	3 cut(s)	348, 567, 992
Mva1269I	GAATGC	1 cut(s)	371
MvaI	CCWGG	3 cut(s)	348, 567, 992
MwoI	GCNNNNNNNGC	6 cut(s)	314, 317, 599, 608, 611, 770
NcoI	CCATGG	2 cut(s)	123, 211
NdeII	GATC	2 cut(s)	245, 945
NlaIII	CATG	9 cut(s)	118, 127, 196, 215, 295, 458, 574, 773, 952
NlaIV	GGNNCC	3 cut(s)	181, 355, 874
NsiI	ATGCAT	1 cut(s)	373
NspI	RCATGY	1 cut(s)	773
NspV	TTCGAA	1 cut(s)	799
PaeI	GCATGC	1 cut(s)	773
PaeR7I	CTCGAG	1 cut(s)	606
PagI	TCATGA	2 cut(s)	454, 948
PctI	GAATGC	1 cut(s)	371
PflFI	GACNNNGTC	1 cut(s)	40
Ple19I	CGATCG	1 cut(s)	248
Ppu21I	YACGTR	1 cut(s)	146
PpuMI	RGGWCCY	1 cut(s)	353
PshBI	ATTAAT	1 cut(s)	84
Psp5II	RGGWCCY	1 cut(s)	353
Psp6I	CCWGG	3 cut(s)	346, 565, 990
PspGI	CCWGG	3 cut(s)	346, 565, 990
PspN4I	GGNNCC	3 cut(s)	181, 355, 874
PspPI	GGNCC	5 cut(s)	161, 179, 344, 353, 873
PspPPI	RGGWCCY	1 cut(s)	353
PspXI	VCTCGAGB	1 cut(s)	606
PstI	CTGCAG	1 cut(s)	1056
PsyI	GACNNNGTC	1 cut(s)	40
PvuI	CGATCG	1 cut(s)	248
RsaI	GTAC	3 cut(s)	144, 795, 942
RsaNI	GTAC	3 cut(s)	143, 794, 941
RseI	CAYNNNNRTG	1 cut(s)	216
SaqAI	TTAA	4 cut(s)	84, 201, 297, 579
Sau3AI	GATC	2 cut(s)	245, 945
Sau96I	GGNCC	5 cut(s)	161, 179, 344, 353, 873
ScrFI	CCNGG	3 cut(s)	348, 567, 992
SduI	GDGCHC	4 cut(s)	93, 587, 688, 732
SfaNI	GCATC	3 cut(s)	358, 804, 857
SfcI	CTRYAG	1 cut(s)	1052
Sfr274I	CTCGAG	1 cut(s)	606
SfuI	TTCGAA	1 cut(s)	799
SinI	GGWCC	5 cut(s)	161, 179, 344, 353, 873
SlaI	CTCGAG	1 cut(s)	606
SmiMI	CAYNNNNRTG	1 cut(s)	216
SmlI	CTYRAG	2 cut(s)	73, 606
SmoI	CTYRAG	2 cut(s)	73, 606
SphI	GCATGC	1 cut(s)	773
Sse9I	AATT	5 cut(s)	97, 165, 184, 409, 740
SsiI	CCGC	2 cut(s)	646, 698
StyD4I	CCNGG	3 cut(s)	346, 565, 990
StyI	CCWWGG	2 cut(s)	123, 211
TaaI	ACNGT	2 cut(s)	494, 893
TaiI	ACGT	1 cut(s)	148
TaqI	TCGA	4 cut(s)	416, 607, 799, 1076
TasI	AATT	5 cut(s)	97, 165, 184, 409, 740
TatI	WGTACW	1 cut(s)	940
TauI	GCSGC	1 cut(s)	701
Tru1I	TTAA	4 cut(s)	84, 201, 297, 579
Tru9I	TTAA	4 cut(s)	84, 201, 297, 579
TscAI	CASTG	2 cut(s)	693, 1027
TspDTI	ATGAA	6 cut(s)	280, 587, 775, 965, 992, 1062
TspGWI	ACGGA	1 cut(s)	503
TspRI	CASTG	2 cut(s)	693, 1027
Tth111I	GACNNNGTC	1 cut(s)	40
VpaK11BI	GGWCC	5 cut(s)	161, 179, 344, 353, 873
VspI	ATTAAT	1 cut(s)	84
XapI	RAATTY	1 cut(s)	740
XceI	RCATGY	1 cut(s)	773
XcmI	CCANNNNNNNNNTGG	4 cut(s)	121, 190, 218, 717
XhoI	CTCGAG	1 cut(s)	606
XmiI	GTMKAC	1 cut(s)	51
Zsp2I	ATGCAT	1 cut(s)	373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.