Rorug01G0310300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0007057
Physical Location & Seq
Forward (+)
42665240 .. 42666115
876 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0310300.1

Sequence Viewer

Length: 528 bp
ATGGAGGAAGAAAGTCAGCTACCCAAATGGGAAGGCAAAACGTCAGCTGAGCTGAAAGGCCCGGCAGCAGAAGAAGTTTGGCCTCTCTTGGCAGATTTCTGCAACATACATAAGTGGTTCCAAAGTCTTGAGACCAGTTATCATGTGGAGGGAGTCCCCGGCCAACCTGGCCTGGTTCGCTACTGCGGGCACCGTGACCATGATGATGACGAAGATGATCAGACGTCGGACACGATCAAGTTCTCAGCTAAAGAGAAGCTACTGATGATCGATCCAGTCAGGCGGTGTTTGAGCTACGAGATACTTGACAACAACTGGGGGCTCAAGTCATATGTTGCAACCATGCAAGTATTGGATCTGGATGGGAATAACGACCAAAGCCGCCGCGGGTGCAAGATTGAGTGGTCGTTTGTTTGTGATCCGATTGAGGGATGGAGGTTTGGAGATTACGTATCTCTTCTCGACTCTTGTCTGCTATCCATGGCAAAAAAGATGGAGCATGATGCCTTTCCATCTACTACTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

175

Amino Acids

20.01

Weight (kDa)

4.65

Isoelectric Point (pI)

50.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Polyketide_cyc2 PF10604 22 - 148 1.9e-15 Polyketide cyclase / dehydrase and lipid transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 227
AccB1I GGYRCC 1 cut(s) 189
AccII CGCG 1 cut(s) 387
AciI CCGC 5 cut(s) 186, 283, 382, 385, 387
AclWI GGATC 3 cut(s) 266, 363, 413
AcoI YGGCCR 1 cut(s) 160
AcyI GRCGYC 1 cut(s) 224
AfiI CCNNNNNNNGG 1 cut(s) 428
AjnI CCWGG 2 cut(s) 166, 171
AluBI AGCT 7 cut(s) 19, 47, 52, 248, 259, 294, 525
AluI AGCT 7 cut(s) 19, 47, 52, 248, 259, 294, 525
Alw26I GTCTC 1 cut(s) 125
AlwI GGATC 3 cut(s) 266, 363, 413
AoxI GGCC 4 cut(s) 58, 80, 160, 169
ApeKI GCWGC 1 cut(s) 65
AspS9I GGNCC 1 cut(s) 59
AsuC2I CCSGG 2 cut(s) 62, 159
BaeGI GKGCMC 1 cut(s) 192
BanI GGYRCC 1 cut(s) 189
BanII GRGCYC 1 cut(s) 324
BbvI GCAGC 1 cut(s) 77
BccI CCATC 4 cut(s) 356, 426, 487, 520
BciT130I CCWGG 2 cut(s) 168, 173
BclI TGATCA 1 cut(s) 217
BcnI CCSGG 2 cut(s) 62, 159
BcoDI GTCTC 1 cut(s) 125
BfaI CTAG 2 cut(s) 522, 526
BglI GCCNNNNNGGC 1 cut(s) 168
BisI GCNGC 3 cut(s) 66, 382, 385
BlpI GCTNAGC 1 cut(s) 48
BlsI GCNGC 3 cut(s) 67, 383, 386
Bme1390I CCNGG 4 cut(s) 62, 159, 168, 173
BmgT120I GGNCC 1 cut(s) 59
BmiI GGNNCC 2 cut(s) 119, 191
BmrFI CCNGG 4 cut(s) 62, 159, 168, 173
BmrI ACTGGG 1 cut(s) 325
BmsI GCATC 1 cut(s) 493
BmuI ACTGGG 1 cut(s) 325
BoxI GACNNNNGTC 1 cut(s) 468
Bpu1102I GCTNAGC 1 cut(s) 48
BpuEI CTTGAG 2 cut(s) 149, 308
BpuMI CCSGG 2 cut(s) 62, 159
Bsa29I ATCGAT 1 cut(s) 270
BsaAI YACGTR 1 cut(s) 451
BsaHI GRCGYC 1 cut(s) 224
BsaI GGTCTC 1 cut(s) 125
BsaJI CCNNGG 3 cut(s) 157, 385, 480
BsaXI ACNNNNNCTCC 2 cut(s) 435, 465
Bsc4I CCNNNNNNNGG 1 cut(s) 428
Bse1I ACTGG 3 cut(s) 135, 275, 320
BseBI CCWGG 2 cut(s) 168, 173
BseCI ATCGAT 1 cut(s) 270
BseDI CCNNGG 3 cut(s) 157, 385, 480
BseGI GGATG 2 cut(s) 367, 437
BseLI CCNNNNNNNGG 1 cut(s) 428
BseMII CTCAG 2 cut(s) 39, 258
BseNI ACTGG 3 cut(s) 135, 275, 320
BseSI GKGCMC 1 cut(s) 192
BseXI GCAGC 1 cut(s) 77
Bsh1236I CGCG 1 cut(s) 387
BshFI GGCC 4 cut(s) 60, 82, 162, 171
BshNI GGYRCC 1 cut(s) 189
BshVI ATCGAT 1 cut(s) 270
BsiSI CCGG 2 cut(s) 62, 159
BslFI GGGAC 1 cut(s) 140
BslI CCNNNNNNNGG 1 cut(s) 428
BsmAI GTCTC 1 cut(s) 125
BsmFI GGGAC 1 cut(s) 140
BsnI GGCC 4 cut(s) 60, 82, 162, 171
Bso31I GGTCTC 1 cut(s) 125
Bsp1286I GDGCHC 2 cut(s) 192, 324
Bsp143I GATC 6 cut(s) 217, 234, 267, 271, 355, 418
Bsp1720I GCTNAGC 1 cut(s) 48
Bsp19I CCATGG 1 cut(s) 480
BspACI CCGC 5 cut(s) 186, 283, 382, 385, 387
BspANI GGCC 4 cut(s) 60, 82, 162, 171
BspCNI CTCAG 2 cut(s) 40, 257
BspDI ATCGAT 1 cut(s) 270
BspFNI CGCG 1 cut(s) 387
BspLI GGNNCC 2 cut(s) 119, 191
BspPI GGATC 3 cut(s) 266, 363, 413
BspT107I GGYRCC 1 cut(s) 189
BspTNI GGTCTC 1 cut(s) 125
BsrI ACTGG 3 cut(s) 135, 275, 320
BssECI CCNNGG 3 cut(s) 157, 385, 480
BssMI GATC 6 cut(s) 217, 234, 267, 271, 355, 418
BssNI GRCGYC 1 cut(s) 224
BssT1I CCWWGG 1 cut(s) 480
Bst2UI CCWGG 2 cut(s) 168, 173
Bst4CI ACNGT 1 cut(s) 194
Bst6I CTCTTC 1 cut(s) 462
BstACI GRCGYC 1 cut(s) 224
BstBAI YACGTR 1 cut(s) 451
BstC8I GCNNGC 1 cut(s) 188
BstDEI CTNAG 2 cut(s) 48, 244
BstDSI CCRYGG 2 cut(s) 385, 480
BstF5I GGATG 2 cut(s) 367, 437
BstFNI CGCG 1 cut(s) 387
BstKTI GATC 6 cut(s) 220, 237, 270, 274, 358, 421
BstMAI GTCTC 1 cut(s) 125
BstMBI GATC 6 cut(s) 217, 234, 267, 271, 355, 418
BstMWI GCNNNNNNNGC 3 cut(s) 168, 177, 390
BstNI CCWGG 2 cut(s) 168, 173
BstPAI GACNNNNGTC 1 cut(s) 468
BstSCI CCNGG 4 cut(s) 60, 157, 166, 171
BstSLI GKGCMC 1 cut(s) 192
BstSNI TACGTA 1 cut(s) 451
BstUI CGCG 1 cut(s) 387
BstV1I GCAGC 1 cut(s) 77
BstX2I RGATCY 1 cut(s) 355
BstYI RGATCY 1 cut(s) 355
Bsu15I ATCGAT 1 cut(s) 270
BsuRI GGCC 4 cut(s) 60, 82, 162, 171
BsuTUI ATCGAT 1 cut(s) 270
BtgI CCRYGG 2 cut(s) 385, 480
BtsCI GGATG 2 cut(s) 367, 437
Cac8I GCNNGC 1 cut(s) 188
Cfr13I GGNCC 1 cut(s) 59
Cfr42I CCGCGG 1 cut(s) 388
ClaI ATCGAT 1 cut(s) 270
CviAII CATG 5 cut(s) 143, 200, 343, 481, 500
DdeI CTNAG 2 cut(s) 48, 244
DpnI GATC 6 cut(s) 219, 236, 269, 273, 357, 420
DpnII GATC 6 cut(s) 217, 234, 267, 271, 355, 418
EaeI YGGCCR 1 cut(s) 160
Eam1104I CTCTTC 1 cut(s) 462
EarI CTCTTC 1 cut(s) 462
Eco105I TACGTA 1 cut(s) 451
Eco130I CCWWGG 1 cut(s) 480
Eco24I GRGCYC 1 cut(s) 324
Eco31I GGTCTC 1 cut(s) 125
EcoRII CCWGG 2 cut(s) 166, 171
EcoT14I CCWWGG 1 cut(s) 480
EcoT38I GRGCYC 1 cut(s) 324
ErhI CCWWGG 1 cut(s) 480
FaeI CATG 5 cut(s) 146, 203, 346, 484, 503
FaiI YATR 9 cut(s) 107, 111, 144, 201, 331, 333, 344, 482, 501
FaqI GGGAC 1 cut(s) 140
FatI CATG 5 cut(s) 142, 199, 342, 480, 499
FauI CCCGC 2 cut(s) 179, 380
FauNDI CATATG 1 cut(s) 331
FbaI TGATCA 1 cut(s) 217
Fnu4HI GCNGC 3 cut(s) 66, 382, 385
FokI GGATG 2 cut(s) 374, 444
FriOI GRGCYC 1 cut(s) 324
Fsp4HI GCNGC 3 cut(s) 66, 382, 385
FspBI CTAG 2 cut(s) 522, 526
GluI GCNGC 3 cut(s) 66, 382, 385
HaeIII GGCC 4 cut(s) 60, 82, 162, 171
HapII CCGG 2 cut(s) 62, 159
Hin1I GRCGYC 1 cut(s) 224
Hin1II CATG 5 cut(s) 146, 203, 346, 484, 503
HinfI GANTC 2 cut(s) 153, 464
HpaII CCGG 2 cut(s) 62, 159
Hpy188I TCNGA 3 cut(s) 222, 229, 423
Hpy188III TCNNGA 3 cut(s) 128, 359, 461
Hpy99I CGWCG 1 cut(s) 229
HpyAV CCTTC 1 cut(s) 26
HpyCH4III ACNGT 1 cut(s) 194
HpyCH4IV ACGT 3 cut(s) 41, 224, 450
HpyCH4V TGCA 4 cut(s) 102, 338, 346, 393
HpyF10VI GCNNNNNNNGC 3 cut(s) 168, 177, 390
HpyF3I CTNAG 2 cut(s) 48, 244
HpySE526I ACGT 3 cut(s) 41, 224, 450
Hsp92I GRCGYC 1 cut(s) 224
Hsp92II CATG 5 cut(s) 146, 203, 346, 484, 503
Ksp22I TGATCA 1 cut(s) 217
KspI CCGCGG 1 cut(s) 388
Kzo9I GATC 6 cut(s) 217, 234, 267, 271, 355, 418
LmnI GCTCC 1 cut(s) 496
Lsp1109I GCAGC 1 cut(s) 77
LweI GCATC 1 cut(s) 493
MaeI CTAG 2 cut(s) 522, 526
MaeII ACGT 3 cut(s) 41, 224, 450
MaeIII GTNAC 1 cut(s) 194
MalI GATC 6 cut(s) 219, 236, 269, 273, 357, 420
MboI GATC 6 cut(s) 217, 234, 267, 271, 355, 418
MboII GAAGA 4 cut(s) 20, 83, 224, 449
MflI RGATCY 1 cut(s) 355
MhlI GDGCHC 2 cut(s) 192, 324
MlyI GAGTC 2 cut(s) 162, 458
MmeI TCCRAC 1 cut(s) 207
MnlI CCTC 4 cut(s) 93, 142, 421, 429
MslI CAYNNNNRTG 1 cut(s) 204
MspA1I CMGCKG 2 cut(s) 47, 387
MspI CCGG 2 cut(s) 62, 159
MspR9I CCNGG 4 cut(s) 62, 159, 168, 173
MvaI CCWGG 2 cut(s) 168, 173
MvnI CGCG 1 cut(s) 387
MwoI GCNNNNNNNGC 3 cut(s) 168, 177, 390
NciI CCSGG 2 cut(s) 62, 159
NcoI CCATGG 1 cut(s) 480
NdeI CATATG 1 cut(s) 331
NdeII GATC 6 cut(s) 217, 234, 267, 271, 355, 418
NlaIII CATG 5 cut(s) 146, 203, 346, 484, 503
NlaIV GGNNCC 2 cut(s) 119, 191
NmuCI GTSAC 1 cut(s) 194
PcsI WCGNNNNNNNCGW 1 cut(s) 230
PkrI GCNGC 3 cut(s) 67, 383, 386
PleI GAGTC 2 cut(s) 161, 458
PpsI GAGTC 2 cut(s) 161, 458
Ppu21I YACGTR 1 cut(s) 451
PshAI GACNNNNGTC 1 cut(s) 468
Psp6I CCWGG 2 cut(s) 166, 171
PspGI CCWGG 2 cut(s) 166, 171
PspN4I GGNNCC 2 cut(s) 119, 191
PspPI GGNCC 1 cut(s) 59
PsuI RGATCY 1 cut(s) 355
PvuII CAGCTG 1 cut(s) 47
RseI CAYNNNNRTG 1 cut(s) 204
SacII CCGCGG 1 cut(s) 388
SatI GCNGC 3 cut(s) 66, 382, 385
Sau3AI GATC 6 cut(s) 217, 234, 267, 271, 355, 418
Sau96I GGNCC 1 cut(s) 59
SchI GAGTC 2 cut(s) 162, 458
ScrFI CCNGG 4 cut(s) 62, 159, 168, 173
SduI GDGCHC 2 cut(s) 192, 324
SfaNI GCATC 1 cut(s) 493
SfiI GGCCNNNNNGGCC 1 cut(s) 168
Sfr303I CCGCGG 1 cut(s) 388
SgrBI CCGCGG 1 cut(s) 388
SmiMI CAYNNNNRTG 1 cut(s) 204
SmlI CTYRAG 2 cut(s) 128, 323
SmoI CTYRAG 2 cut(s) 128, 323
SnaBI TACGTA 1 cut(s) 451
SsiI CCGC 5 cut(s) 186, 283, 382, 385, 387
SspMI CTAG 2 cut(s) 522, 526
StyD4I CCNGG 4 cut(s) 60, 157, 166, 171
StyI CCWWGG 1 cut(s) 480
TaaI ACNGT 1 cut(s) 194
TaiI ACGT 3 cut(s) 44, 227, 453
TaqI TCGA 2 cut(s) 270, 462
TauI GCSGC 2 cut(s) 384, 387
TseFI GTSAC 1 cut(s) 194
TseI GCWGC 1 cut(s) 65
Tsp45I GTSAC 1 cut(s) 194
XcmI CCANNNNNNNNNTGG 2 cut(s) 142, 349
XspI CTAG 2 cut(s) 522, 526
ZraI GACGTC 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.