Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0007057

Physical Location & Seq

Genomic Coordinates Reverse (-)

25630504 .. 25633025

Gene Structure 2522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1177000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGATTCCTTTTTCAATTTCAAAGCTCCAAGTGACGATTGTGTGCCGTCTGAGCTAGACATTCTCAAATGCCCATTTTTGAGAAACATCAATGAGCCCACCAATTTTTCCTTCGCCTCATCCTTGGCGTTCCCAGTACCTGGACGTGGAGCCAAAGGTCCAATATTTGAAGATGGTCCCAATTTTGACATGGCATTTCGGCTTTTCCATGGGAGTGACGGAGTTGTCCCGCTTTCTGGAAAATCATATGTGCATTCTGACATAGTTGAGCCTCAACCAGCCCCACCCATGTTCAATCCATTAGCTGCAAAGGCAGCTACGATCAGTCTCTCATCCTTTGGTGCTGGAGGGCCATTCAGTTTCGATGCATTCCATAAGAAATGGAAGAACCAGCAAAAGAAATCTAATTCCTCGAAAAAAGATTCTACGTCAAAGGGAGGAAATTCTAATCACGAGGCAGTGGGCAATGAGTGGCTACAATCTGGAAACTGTCCGATCGCAAAGTCATACCGTGCTGTTAGTGGTGTCATTCCACTAGTCGCAAAGGCTTTTCAGCCCCCTCCAGGCATGAAAATCAAGTGCCCGCCAGCAATAGTTGCAGCCCGAGCAGCCCTGTCGCGAACTGCATTTGCAAAGAACCTCCGCCCGCAACCCCTTCCTGCAAAAGTACTTGTGATTGGAGCGATGGGCATGGCAGCCAATGTTCCTTTAGGGATATGGAGAGAGCACACCAAGAAATTCTCACTATCTTGGTTCGCCGCTGTGCATGCGGCTGTCCCATTCATAGCCTTACTTCGGAAGTCTGTGCTGATGCCTAAATCAGCCATGGCGTTCACCATTGCCGCATCAGTACTTGGACAGGTCATTGGCTCCAGAGCAGAACGGTACCGTCTGAAGGCAGTGGCTTCGAAAAGTTCACCTCTGACTGAAACCTCCGCTGGTGTTGTGACAACGCAGACAAGCGAGCTACAGGTGCTCCAAGCAAAAACTGAAACCTCTGCTGGTGGTGCGACAACACAGACAAGCGAGCTACAGGTGCTCCAAGCAAAAACCGGCCACTGCAATGCGATTGAGGAGTGGAATTCAGTTTCCCTTCAGGTGGCGCGTCCTTCGTCATCCGCAGATGTGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

378

Amino Acids

40.09

Weight (kDa)

9.69

Isoelectric Point (pI)

42.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25030 AT4G25030
fragaria_vesca	FvH4_7g19880 FvH4_7g19880
malus_domestica	MD01G1110900.v1.1 MD05G1255700.v1.1 MD07G1177000.v1.1
prunus_persica	Prupe.2G215800_v2.0.a1
pyrus_communis	pycom01g13820 pycom07g17110
rosa_chinensis	RchiOBHm_Chr1g0363861
rosa_laevigata	RLG00000027540
rosa_multiflora	Rmu_co8207472.1_g000001 Rmu_sc0002483.1_g000002 Rmu_sc0041994.1_g000001
rosa_roxburghii	Rroxscaffold_4G00292910
rosa_rugosa	Rorug01G0310000 Rorug01G0310100 Rorug01G0310200 Rorug01G0310300
rosa_samantha	Rh1AG318400 Rh1BG281600 Rh1CG298000 Rh1DG312900
rosa_wichuraiana	Rw1G028260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	224
Acc65I	GGTACC	1 cut(s)	885
AccB1I	GGYRCC	1 cut(s)	885
AccB7I	CCANNNNNTGG	1 cut(s)	140
AccII	CGCG	2 cut(s)	619, 1105
AciI	CCGC	9 cut(s)	230, 584, 643, 647, 759, 770, 843, 936, 1119
AcoI	YGGCCR	1 cut(s)	1054
AcsI	RAATTY	3 cut(s)	442, 737, 1081
AcuI	CTGAAG	2 cut(s)	914, 1079
AfaI	GTAC	4 cut(s)	138, 669, 852, 887
AfiI	CCNNNNNNNGG	7 cut(s)	140, 146, 236, 563, 795, 895, 1099
AgsI	TTSAA	4 cut(s)	16, 22, 170, 295
AhlI	ACTAGT	1 cut(s)	535
AjiI	CACGTC	1 cut(s)	146
AjnI	CCWGG	2 cut(s)	139, 562
AjuI	GAANNNNNNNTTGG	2 cut(s)	95, 127
AluBI	AGCT	6 cut(s)	26, 55, 305, 317, 967, 1030
AluI	AGCT	6 cut(s)	26, 55, 305, 317, 967, 1030
Alw21I	GWGCWC	3 cut(s)	729, 978, 1041
Alw26I	GTCTC	1 cut(s)	332
AlwNI	CAGNNNCTG	1 cut(s)	140
Ama87I	CYCGRG	1 cut(s)	603
AoxI	GGCC	2 cut(s)	350, 1054
ApeKI	GCWGC	5 cut(s)	305, 314, 599, 608, 695
ApoI	RAATTY	3 cut(s)	442, 737, 1081
Asp718I	GGTACC	1 cut(s)	885
AspLEI	GCGC	1 cut(s)	1105
AspS9I	GGNCC	3 cut(s)	158, 176, 350
AsuHPI	GGTGA	2 cut(s)	826, 909
AsuII	TTCGAA	1 cut(s)	908
AvaI	CYCGRG	1 cut(s)	603
AvaII	GGWCC	2 cut(s)	158, 176
BaeGI	GKGCMC	1 cut(s)	584
BanI	GGYRCC	1 cut(s)	885
BanII	GRGCYC	1 cut(s)	99
BauI	CACGAG	1 cut(s)	452
Bbv12I	GWGCWC	3 cut(s)	729, 978, 1041
BbvI	GCAGC	5 cut(s)	292, 326, 611, 620, 707
BccI	CCATC	2 cut(s)	167, 679
BceAI	ACGGC	1 cut(s)	31
BcgI	CGANNNNNNTGC	4 cut(s)	597, 631, 888, 922
BciT130I	CCWGG	2 cut(s)	141, 564
BcoDI	GTCTC	1 cut(s)	332
BcuI	ACTAGT	1 cut(s)	535
BfaI	CTAG	2 cut(s)	56, 536
BfmI	CTRYAG	2 cut(s)	968, 1031
BisI	GCNGC	8 cut(s)	306, 315, 600, 609, 696, 759, 771, 843
BlsI	GCNGC	8 cut(s)	307, 316, 601, 610, 697, 760, 772, 844
BmcAI	AGTACT	2 cut(s)	669, 852
Bme1390I	CCNGG	2 cut(s)	141, 564
Bme18I	GGWCC	2 cut(s)	158, 176
BmeT110I	CYCGRG	1 cut(s)	603
BmgBI	CACGTC	1 cut(s)	146
BmgT120I	GGNCC	3 cut(s)	158, 176, 350
BmiI	GGNNCC	4 cut(s)	151, 178, 871, 887
BmrFI	CCNGG	2 cut(s)	141, 564
BmrI	ACTGGG	1 cut(s)	128
BmsI	GCATC	3 cut(s)	355, 801, 854
BmuI	ACTGGG	1 cut(s)	128
BpmI	CTGGAG	3 cut(s)	366, 546, 856
Bpu14I	TTCGAA	1 cut(s)	908
BsaJI	CCNNGG	3 cut(s)	123, 208, 825
BsaXI	ACNNNNNCTCC	4 cut(s)	960, 990, 1023, 1053
Bsc4I	CCNNNNNNNGG	7 cut(s)	140, 146, 236, 563, 795, 895, 1099
Bse118I	RCCGGY	1 cut(s)	1052
Bse1I	ACTGG	1 cut(s)	134
Bse3DI	GCAATG	3 cut(s)	472, 837, 1069
BseBI	CCWGG	2 cut(s)	141, 564
BseDI	CCNNGG	3 cut(s)	123, 208, 825
BseGI	GGATG	3 cut(s)	119, 332, 1115
BseLI	CCNNNNNNNGG	7 cut(s)	140, 146, 236, 563, 795, 895, 1099
BseMI	GCAATG	3 cut(s)	472, 837, 1069
BseMII	CTCAG	1 cut(s)	42
BseNI	ACTGG	1 cut(s)	134
BseRI	GAGGAG	1 cut(s)	1088
BseSI	GKGCMC	1 cut(s)	584
BseXI	GCAGC	5 cut(s)	292, 326, 611, 620, 707
Bsh1236I	CGCG	2 cut(s)	619, 1105
Bsh1285I	CGRYCG	1 cut(s)	498
BshFI	GGCC	2 cut(s)	352, 1056
BshNI	GGYRCC	1 cut(s)	885
BsiEI	CGRYCG	1 cut(s)	498
BsiHKAI	GWGCWC	3 cut(s)	729, 978, 1041
BsiHKCI	CYCGRG	1 cut(s)	603
BsiSI	CCGG	1 cut(s)	1053
BslFI	GGGAC	3 cut(s)	162, 212, 761
BslI	CCNNNNNNNGG	7 cut(s)	140, 146, 236, 563, 795, 895, 1099
BsmAI	GTCTC	1 cut(s)	332
BsmFI	GGGAC	3 cut(s)	162, 212, 761
BsmI	GAATGC	2 cut(s)	253, 368
BsnI	GGCC	2 cut(s)	352, 1056
BsoBI	CYCGRG	1 cut(s)	603
Bsp119I	TTCGAA	1 cut(s)	908
Bsp1286I	GDGCHC	5 cut(s)	99, 584, 729, 978, 1041
Bsp143I	GATC	2 cut(s)	321, 495
Bsp19I	CCATGG	2 cut(s)	208, 825
Bsp68I	TCGCGA	1 cut(s)	619
BspACI	CCGC	9 cut(s)	230, 584, 643, 647, 759, 770, 843, 936, 1119
BspANI	GGCC	2 cut(s)	352, 1056
BspCNI	CTCAG	1 cut(s)	43
BspFNI	CGCG	2 cut(s)	619, 1105
BspLI	GGNNCC	4 cut(s)	151, 178, 871, 887
BspT104I	TTCGAA	1 cut(s)	908
BspT107I	GGYRCC	1 cut(s)	885
BsrDI	GCAATG	3 cut(s)	472, 837, 1069
BsrFI	RCCGGY	1 cut(s)	1052
BsrI	ACTGG	1 cut(s)	134
BssAI	RCCGGY	1 cut(s)	1052
BssECI	CCNNGG	3 cut(s)	123, 208, 825
BssMI	GATC	2 cut(s)	321, 495
BssSI	CACGAG	1 cut(s)	452
BssT1I	CCWWGG	3 cut(s)	123, 208, 825
Bst2BI	CACGAG	1 cut(s)	452
Bst2UI	CCWGG	2 cut(s)	141, 564
Bst4CI	ACNGT	4 cut(s)	491, 512, 885, 890
BstAPI	GCANNNNNTGC	1 cut(s)	596
BstBI	TTCGAA	1 cut(s)	908
BstC8I	GCNNGC	6 cut(s)	584, 588, 647, 768, 965, 1028
BstDEI	CTNAG	1 cut(s)	51
BstDSI	CCRYGG	2 cut(s)	208, 825
BstF5I	GGATG	3 cut(s)	119, 332, 1115
BstFNI	CGCG	2 cut(s)	619, 1105
BstHHI	GCGC	1 cut(s)	1105
BstKTI	GATC	2 cut(s)	324, 498
BstMAI	GTCTC	1 cut(s)	332
BstMBI	GATC	2 cut(s)	321, 495
BstMCI	CGRYCG	1 cut(s)	498
BstNI	CCWGG	2 cut(s)	141, 564
BstNSI	RCATGY	1 cut(s)	770
BstSCI	CCNGG	2 cut(s)	139, 562
BstSFI	CTRYAG	2 cut(s)	968, 1031
BstSLI	GKGCMC	1 cut(s)	584
BstUI	CGCG	2 cut(s)	619, 1105
BstV1I	GCAGC	5 cut(s)	292, 326, 611, 620, 707
BsuRI	GGCC	2 cut(s)	352, 1056
BtgI	CCRYGG	2 cut(s)	208, 825
BtgZI	GCGATG	1 cut(s)	698
BtrI	CACGTC	1 cut(s)	146
BtsCI	GGATG	3 cut(s)	119, 332, 1115
BtsI	GCAGTG	3 cut(s)	465, 906, 1057
BtsIMutI	CAGTG	3 cut(s)	465, 906, 1057
BtuMI	TCGCGA	1 cut(s)	619
Cac8I	GCNNGC	6 cut(s)	584, 588, 647, 768, 965, 1028
CaiI	CAGNNNCTG	1 cut(s)	140
CfoI	GCGC	1 cut(s)	1105
Cfr10I	RCCGGY	1 cut(s)	1052
Cfr13I	GGNCC	3 cut(s)	158, 176, 350
CseI	GACGC	1 cut(s)	1094
Csp6I	GTAC	4 cut(s)	137, 668, 851, 886
CviAII	CATG	7 cut(s)	190, 209, 289, 568, 691, 767, 826
CviQI	GTAC	4 cut(s)	137, 668, 851, 886
DdeI	CTNAG	1 cut(s)	51
DpnI	GATC	2 cut(s)	323, 497
DpnII	GATC	2 cut(s)	321, 495
DrdI	GACNNNNNNGTC	1 cut(s)	224
DseDI	GACNNNNNNGTC	1 cut(s)	224
EaeI	YGGCCR	1 cut(s)	1054
EciI	GGCGGA	1 cut(s)	632
Eco130I	CCWWGG	3 cut(s)	123, 208, 825
Eco24I	GRGCYC	1 cut(s)	99
Eco47I	GGWCC	2 cut(s)	158, 176
Eco57I	CTGAAG	2 cut(s)	914, 1079
Eco88I	CYCGRG	1 cut(s)	603
EcoRI	GAATTC	1 cut(s)	1081
EcoRII	CCWGG	2 cut(s)	139, 562
EcoT14I	CCWWGG	3 cut(s)	123, 208, 825
EcoT22I	ATGCAT	1 cut(s)	370
EcoT38I	GRGCYC	1 cut(s)	99
ErhI	CCWWGG	3 cut(s)	123, 208, 825
FaeI	CATG	7 cut(s)	193, 212, 292, 571, 694, 770, 829
FaqI	GGGAC	3 cut(s)	162, 212, 761
FatI	CATG	7 cut(s)	189, 208, 288, 567, 690, 766, 825
FauI	CCCGC	3 cut(s)	237, 591, 654
FauNDI	CATATG	1 cut(s)	247
Fnu4HI	GCNGC	8 cut(s)	306, 315, 600, 609, 696, 759, 771, 843
FokI	GGATG	3 cut(s)	106, 319, 1102
FriOI	GRGCYC	1 cut(s)	99
Fsp4HI	GCNGC	8 cut(s)	306, 315, 600, 609, 696, 759, 771, 843
FspBI	CTAG	2 cut(s)	56, 536
GlaI	GCGC	1 cut(s)	1104
GluI	GCNGC	8 cut(s)	306, 315, 600, 609, 696, 759, 771, 843
GsuI	CTGGAG	3 cut(s)	366, 546, 856
HaeIII	GGCC	2 cut(s)	352, 1056
HapII	CCGG	1 cut(s)	1053
HgaI	GACGC	1 cut(s)	1094
HhaI	GCGC	1 cut(s)	1105
Hin1II	CATG	7 cut(s)	193, 212, 292, 571, 694, 770, 829
Hin6I	GCGC	1 cut(s)	1103
HinP1I	GCGC	1 cut(s)	1103
HinfI	GANTC	2 cut(s)	5, 422
HpaII	CCGG	1 cut(s)	1053
HphI	GGTGA	2 cut(s)	826, 909
Hpy166II	GTNNAC	2 cut(s)	834, 917
Hpy188I	TCNGA	6 cut(s)	52, 259, 495, 798, 894, 924
Hpy188III	TCNNGA	5 cut(s)	237, 452, 483, 618, 873
Hpy8I	GTNNAC	2 cut(s)	834, 917
HpyAV	CCTTC	5 cut(s)	121, 665, 889, 1103, 1119
HpyCH4III	ACNGT	4 cut(s)	491, 512, 885, 890
HpyCH4IV	ACGT	2 cut(s)	145, 428
HpyCH4V	TGCA	9 cut(s)	253, 308, 368, 599, 626, 632, 662, 766, 1062
HpyF3I	CTNAG	1 cut(s)	51
HpySE526I	ACGT	2 cut(s)	145, 428
Hsp92II	CATG	7 cut(s)	193, 212, 292, 571, 694, 770, 829
HspAI	GCGC	1 cut(s)	1103
KpnI	GGTACC	1 cut(s)	889
Kzo9I	GATC	2 cut(s)	321, 495
LmnI	GCTCC	6 cut(s)	31, 149, 680, 875, 981, 1044
Lsp1109I	GCAGC	5 cut(s)	292, 326, 611, 620, 707
LweI	GCATC	3 cut(s)	355, 801, 854
MaeI	CTAG	2 cut(s)	56, 536
MaeII	ACGT	2 cut(s)	145, 428
MaeIII	GTNAC	3 cut(s)	32, 215, 946
MalI	GATC	2 cut(s)	323, 497
MboI	GATC	2 cut(s)	321, 495
MboII	GAAGA	2 cut(s)	182, 397
MhlI	GDGCHC	5 cut(s)	99, 584, 729, 978, 1041
MluCI	AATT	7 cut(s)	16, 103, 181, 406, 442, 737, 1081
Mph1103I	ATGCAT	1 cut(s)	370
MslI	CAYNNNNRTG	2 cut(s)	213, 1062
MspA1I	CMGCKG	2 cut(s)	761, 938
MspI	CCGG	1 cut(s)	1053
MspR9I	CCNGG	2 cut(s)	141, 564
Mva1269I	GAATGC	2 cut(s)	253, 368
MvaI	CCWGG	2 cut(s)	141, 564
MvnI	CGCG	2 cut(s)	619, 1105
NcoI	CCATGG	2 cut(s)	208, 825
NdeI	CATATG	1 cut(s)	247
NdeII	GATC	2 cut(s)	321, 495
NlaIII	CATG	7 cut(s)	193, 212, 292, 571, 694, 770, 829
NlaIV	GGNNCC	4 cut(s)	151, 178, 871, 887
NmuCI	GTSAC	3 cut(s)	32, 215, 946
NruI	TCGCGA	1 cut(s)	619
NsiI	ATGCAT	1 cut(s)	370
NspI	RCATGY	1 cut(s)	770
NspV	TTCGAA	1 cut(s)	908
PaeI	GCATGC	1 cut(s)	770
PctI	GAATGC	2 cut(s)	253, 368
PfeI	GAWTC	2 cut(s)	5, 422
PflMI	CCANNNNNTGG	1 cut(s)	140
PkrI	GCNGC	8 cut(s)	307, 316, 601, 610, 697, 760, 772, 844
Ple19I	CGATCG	1 cut(s)	498
Psp6I	CCWGG	2 cut(s)	139, 562
PspGI	CCWGG	2 cut(s)	139, 562
PspN4I	GGNNCC	4 cut(s)	151, 178, 871, 887
PspPI	GGNCC	3 cut(s)	158, 176, 350
PstNI	CAGNNNCTG	1 cut(s)	140
PvuI	CGATCG	1 cut(s)	498
RruI	TCGCGA	1 cut(s)	619
RsaI	GTAC	4 cut(s)	138, 669, 852, 887
RsaNI	GTAC	4 cut(s)	137, 668, 851, 886
RseI	CAYNNNNRTG	2 cut(s)	213, 1062
SatI	GCNGC	8 cut(s)	306, 315, 600, 609, 696, 759, 771, 843
Sau3AI	GATC	2 cut(s)	321, 495
Sau96I	GGNCC	3 cut(s)	158, 176, 350
ScaI	AGTACT	2 cut(s)	669, 852
ScrFI	CCNGG	2 cut(s)	141, 564
SduI	GDGCHC	5 cut(s)	99, 584, 729, 978, 1041
SfaNI	GCATC	3 cut(s)	355, 801, 854
SfcI	CTRYAG	2 cut(s)	968, 1031
SfuI	TTCGAA	1 cut(s)	908
SinI	GGWCC	2 cut(s)	158, 176
SmiMI	CAYNNNNRTG	2 cut(s)	213, 1062
SpeI	ACTAGT	1 cut(s)	535
SphI	GCATGC	1 cut(s)	770
Sse9I	AATT	7 cut(s)	16, 103, 181, 406, 442, 737, 1081
SsiI	CCGC	9 cut(s)	230, 584, 643, 647, 759, 770, 843, 936, 1119
SspI	AATATT	1 cut(s)	165
SspMI	CTAG	2 cut(s)	56, 536
StyD4I	CCNGG	2 cut(s)	139, 562
StyI	CCWWGG	3 cut(s)	123, 208, 825
TaaI	ACNGT	4 cut(s)	491, 512, 885, 890
TaiI	ACGT	2 cut(s)	148, 431
TaqI	TCGA	3 cut(s)	363, 413, 908
TasI	AATT	7 cut(s)	16, 103, 181, 406, 442, 737, 1081
TatI	WGTACW	2 cut(s)	667, 850
TauI	GCSGC	3 cut(s)	761, 773, 845
TfiI	GAWTC	2 cut(s)	5, 422
TscAI	CASTG	3 cut(s)	465, 906, 1064
TseFI	GTSAC	3 cut(s)	32, 215, 946
TseI	GCWGC	5 cut(s)	305, 314, 599, 608, 695
Tsp45I	GTSAC	3 cut(s)	32, 215, 946
TspDTI	ATGAA	2 cut(s)	584, 772
TspGWI	ACGGA	1 cut(s)	234
TspRI	CASTG	3 cut(s)	465, 906, 1064
Van91I	CCANNNNNTGG	1 cut(s)	140
VpaK11BI	GGWCC	2 cut(s)	158, 176
XapI	RAATTY	3 cut(s)	442, 737, 1081
XceI	RCATGY	1 cut(s)	770
XcmI	CCANNNNNNNNNTGG	1 cut(s)	187
XspI	CTAG	2 cut(s)	56, 536
ZrmI	AGTACT	2 cut(s)	669, 852
Zsp2I	ATGCAT	1 cut(s)	370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.