Rmu_sc0041994.1_g000001

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0041994.1
Physical Location & Seq
Reverse (-)
475 .. 3889
3415 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0041994.1_g000001.1.cds

Sequence Viewer

Length: 1488 bp
atggagtgctttttcaaaggtgcgaatgaggacttgacgccttctccggtagacattcttcggtgtccgtttttgaggaacattaatgagccaaccaatttttccttctcctccatgtcgtccatggctttcccgatgccggtacgtgcagccagcaaaggtccaatttttgaagatggtcccaatttcgacatggcatttaagcttttccatgggagtgatggagtagtccctctttctggacgatcatttgagcattctgagaaagttgagcatcaaccggccccatgcatgtttaatccattagctgcaaaggcagctactatcagtctctcatcctttggacctggaggacctttcggctttgatgcattctctgagaagtggaagaaaatgcaaaagaagtctaattcctcgaaaaagggttcttcttcaaagggggggaactctaatcatgaggcagcgagtaacgagtggctgcaaagtggaaactgtccgattgcaaagtcattccgtgctgttagtggtgtcattccacttgttgcaaaggctttgcagctccctccaggcatgaaagttaagtgcccaccggcaatagttgcagcacgagcagctctggcaaaaactgcatttgcaaagaacctccgcccacaacccctgcctgcaaaagttcttgtgattggagcactgggaatggcagccaatgttcctttagggatatggagagagcacaccaagaaattctctccgtcttggtttgctgctgtgcatgcagctgttccattcatagctgtacttcgaaagtctgtgttgatgcctaagtcggctatggcgtttaccattgcagcatctatattaggacaggtgattgggtctagagcagagcgctaccgtctgaaggcaaaggcggctaaaaccttggcattgactgaaacctctgttcagatcaagaagactgaaacctctgttgttgggatgaaaagccagttccaggtggttgaagcgaaatctgatcattgcactgagattgaggaatggaattcagttgctctgcagggttttggggaatcggacaccgcccctgaaaccgacgacgtcgactcgaacctccagcctttcgccggaacgccgttccgatatccaatgtcgacctcttcgctatcacctcagactttcggattgccgtggcccgatctcaacgacggcttgtcatacaacgacgtcgttaaaccctccgattccgaattgacactgatagagttctactctagcaaatacaagagctcagctccgttgcaaggttggctgcagagaatccgaaacggacagataacagttgatggagaagtagttagagattcgaatacgattctcagggttggttcggaattggtctatcataggcttgcatggagagagccggatgcgccatacttgctcgaggttctatatgaggatgatgatatggtaaatgtcttaaacctgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

495

Amino Acids

53.86

Weight (kDa)

8.7

Isoelectric Point (pI)

49.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 1098, 1224
AccI GTMKAC 3 cut(s) 51, 1098, 1148
AciI CCGC 3 cut(s) 646, 908, 1077
AcsI RAATTY 2 cut(s) 740, 1039
AcuI CTGAAG 1 cut(s) 917
AcyI GRCGYC 3 cut(s) 38, 1095, 1221
AfaI GTAC 2 cut(s) 144, 795
AfeI AGCGCT 1 cut(s) 887
AfiI CCNNNNNNNGG 6 cut(s) 139, 239, 898, 991, 1121, 1298
AgsI TTSAA 4 cut(s) 16, 173, 435, 1001
AhdI GACNNNNNGTC 1 cut(s) 1207
AjnI CCWGG 3 cut(s) 346, 565, 990
AjuI GAANNNNNNNTTGG 4 cut(s) 85, 89, 117, 121
AluBI AGCT 9 cut(s) 205, 308, 320, 559, 614, 776, 791, 1284, 1289
AluI AGCT 9 cut(s) 205, 308, 320, 559, 614, 776, 791, 1284, 1289
Alw21I GWGCWC 3 cut(s) 688, 732, 1286
Alw26I GTCTC 1 cut(s) 335
Ama87I CYCGRG 1 cut(s) 1439
Aor51HI AGCGCT 1 cut(s) 887
AoxI GGCC 2 cut(s) 282, 1187
ApoI RAATTY 2 cut(s) 740, 1039
AseI ATTAAT 1 cut(s) 84
AspLEI GCGC 2 cut(s) 888, 1429
AspS9I GGNCC 6 cut(s) 161, 179, 283, 344, 353, 1188
AsuHPI GGTGA 2 cut(s) 877, 1155
AsuII TTCGAA 2 cut(s) 799, 1361
AvaI CYCGRG 1 cut(s) 1439
AvaII GGWCC 4 cut(s) 161, 179, 344, 353
BaeGI GKGCMC 1 cut(s) 587
BanII GRGCYC 1 cut(s) 1286
BarI GAAGNNNNNNTAC 2 cut(s) 42, 74
BauI CACGAG 1 cut(s) 606
BbsI GAAGAC 1 cut(s) 959
Bbv12I GWGCWC 3 cut(s) 688, 732, 1286
BccI CCATC 3 cut(s) 170, 215, 1334
BceAI ACGGC 3 cut(s) 1114, 1168, 1219
BciT130I CCWGG 3 cut(s) 348, 567, 992
BclI TGATCA 1 cut(s) 1012
BcoDI GTCTC 1 cut(s) 335
BfaI CTAG 2 cut(s) 876, 1269
BfmI CTRYAG 2 cut(s) 1052, 1307
BfoI RGCGCY 1 cut(s) 889
BlpI GCTNAGC 1 cut(s) 1285
Bme1390I CCNGG 3 cut(s) 348, 567, 992
Bme18I GGWCC 4 cut(s) 161, 179, 344, 353
BmeRI GACNNNNNGTC 1 cut(s) 1207
BmeT110I CYCGRG 1 cut(s) 1439
BmgT120I GGNCC 6 cut(s) 161, 179, 283, 344, 353, 1188
BmiI GGNNCC 2 cut(s) 181, 285
BmrFI CCNGG 3 cut(s) 348, 567, 992
BmrI ACTGGG 1 cut(s) 698
BmsI GCATC 6 cut(s) 126, 283, 358, 804, 857, 1414
BmuI ACTGGG 1 cut(s) 698
BpiI GAAGAC 1 cut(s) 959
BplI GAGNNNNNCTC 4 cut(s) 1250, 1282, 1273, 1305
BpmI CTGGAG 3 cut(s) 369, 549, 1094
Bpu1102I GCTNAGC 1 cut(s) 1285
Bpu14I TTCGAA 2 cut(s) 799, 1361
BsaAI YACGTR 1 cut(s) 146
BsaHI GRCGYC 3 cut(s) 38, 1095, 1221
BsaJI CCNNGG 4 cut(s) 123, 211, 918, 1184
BsaWI WCCGGW 1 cut(s) 46
BsaXI ACNNNNNCTCC 4 cut(s) 28, 58, 1335, 1365
Bsc4I CCNNNNNNNGG 6 cut(s) 139, 239, 898, 991, 1121, 1298
Bse118I RCCGGY 3 cut(s) 139, 280, 589
Bse1I ACTGG 2 cut(s) 693, 985
Bse3DI GCAATG 2 cut(s) 840, 1015
BseBI CCWGG 3 cut(s) 348, 567, 992
BseDI CCNNGG 4 cut(s) 123, 211, 918, 1184
BseGI GGATG 4 cut(s) 335, 981, 1429, 1462
BseLI CCNNNNNNNGG 6 cut(s) 139, 239, 898, 991, 1121, 1298
BseMI GCAATG 2 cut(s) 840, 1015
BseMII CTCAG 6 cut(s) 252, 369, 1014, 1181, 1299, 1387
BseNI ACTGG 2 cut(s) 693, 985
BseRI GAGGAG 1 cut(s) 100
BseSI GKGCMC 1 cut(s) 587
BsgI GTGCAG 1 cut(s) 168
BshFI GGCC 2 cut(s) 284, 1189
BsiHKAI GWGCWC 3 cut(s) 688, 732, 1286
BsiHKCI CYCGRG 1 cut(s) 1439
BsiSI CCGG 6 cut(s) 47, 140, 281, 590, 1122, 1421
BslFI GGGAC 2 cut(s) 165, 215
BslI CCNNNNNNNGG 6 cut(s) 139, 239, 898, 991, 1121, 1298
BsmAI GTCTC 1 cut(s) 335
BsmFI GGGAC 2 cut(s) 165, 215
BsmI GAATGC 2 cut(s) 256, 371
BsnI GGCC 2 cut(s) 284, 1189
BsoBI CYCGRG 1 cut(s) 1439
Bsp119I TTCGAA 2 cut(s) 799, 1361
Bsp1286I GDGCHC 4 cut(s) 587, 688, 732, 1286
Bsp143I GATC 4 cut(s) 245, 945, 1012, 1192
Bsp1720I GCTNAGC 1 cut(s) 1285
Bsp19I CCATGG 2 cut(s) 123, 211
BspACI CCGC 3 cut(s) 646, 908, 1077
BspANI GGCC 2 cut(s) 284, 1189
BspCNI CTCAG 6 cut(s) 253, 370, 1015, 1180, 1298, 1386
BspHI TCATGA 1 cut(s) 454
BspLI GGNNCC 2 cut(s) 181, 285
BspMAI CTGCAG 2 cut(s) 1056, 1311
BspT104I TTCGAA 2 cut(s) 799, 1361
BsrDI GCAATG 2 cut(s) 840, 1015
BsrFI RCCGGY 3 cut(s) 139, 280, 589
BsrI ACTGG 2 cut(s) 693, 985
BssAI RCCGGY 3 cut(s) 139, 280, 589
BssECI CCNNGG 4 cut(s) 123, 211, 918, 1184
BssMI GATC 4 cut(s) 245, 945, 1012, 1192
BssNI GRCGYC 3 cut(s) 38, 1095, 1221
BssSI CACGAG 1 cut(s) 606
BssT1I CCWWGG 3 cut(s) 123, 211, 918
Bst2BI CACGAG 1 cut(s) 606
Bst2UI CCWGG 3 cut(s) 348, 567, 992
Bst4CI ACNGT 3 cut(s) 494, 893, 1336
Bst6I CTCTTC 1 cut(s) 1159
BstACI GRCGYC 3 cut(s) 38, 1095, 1221
BstAPI GCANNNNNTGC 2 cut(s) 599, 626
BstBAI YACGTR 1 cut(s) 146
BstBI TTCGAA 2 cut(s) 799, 1361
BstC8I GCNNGC 4 cut(s) 154, 663, 771, 1407
BstDEI CTNAG 7 cut(s) 261, 378, 819, 1023, 1167, 1285, 1373
BstDSI CCRYGG 3 cut(s) 123, 211, 1184
BstF5I GGATG 4 cut(s) 335, 981, 1429, 1462
BstH2I RGCGCY 1 cut(s) 889
BstHHI GCGC 2 cut(s) 888, 1429
BstKTI GATC 4 cut(s) 248, 948, 1015, 1195
BstMAI GTCTC 1 cut(s) 335
BstMBI GATC 4 cut(s) 245, 945, 1012, 1192
BstNI CCWGG 3 cut(s) 348, 567, 992
BstNSI RCATGY 2 cut(s) 295, 773
BstSCI CCNGG 3 cut(s) 346, 565, 990
BstSFI CTRYAG 2 cut(s) 1052, 1307
BstSLI GKGCMC 1 cut(s) 587
BstV2I GAAGAC 1 cut(s) 959
BsuRI GGCC 2 cut(s) 284, 1189
BtgI CCRYGG 3 cut(s) 123, 211, 1184
BtsCI GGATG 4 cut(s) 335, 981, 1429, 1462
BtsIMutI CAGTG 3 cut(s) 686, 1020, 1250
Cac8I GCNNGC 4 cut(s) 154, 663, 771, 1407
CciI TCATGA 1 cut(s) 454
CfoI GCGC 2 cut(s) 888, 1429
Cfr10I RCCGGY 3 cut(s) 139, 280, 589
Cfr13I GGNCC 6 cut(s) 161, 179, 283, 344, 353, 1188
CseI GACGC 1 cut(s) 46
Csp6I GTAC 2 cut(s) 143, 794
CviQI GTAC 2 cut(s) 143, 794
DdeI CTNAG 7 cut(s) 261, 378, 819, 1023, 1167, 1285, 1373
DpnI GATC 4 cut(s) 247, 947, 1014, 1194
DpnII GATC 4 cut(s) 245, 945, 1012, 1192
DriI GACNNNNNGTC 1 cut(s) 1207
Eam1104I CTCTTC 1 cut(s) 1159
Eam1105I GACNNNNNGTC 1 cut(s) 1207
EarI CTCTTC 1 cut(s) 1159
EciI GGCGGA 1 cut(s) 635
Ecl136II GAGCTC 1 cut(s) 1284
Eco130I CCWWGG 3 cut(s) 123, 211, 918
Eco24I GRGCYC 1 cut(s) 1286
Eco32I GATATC 1 cut(s) 1139
Eco47I GGWCC 4 cut(s) 161, 179, 344, 353
Eco47III AGCGCT 1 cut(s) 887
Eco53kI GAGCTC 1 cut(s) 1284
Eco57I CTGAAG 1 cut(s) 917
Eco88I CYCGRG 1 cut(s) 1439
EcoICRI GAGCTC 1 cut(s) 1284
EcoO109I RGGNCCY 1 cut(s) 353
EcoRI GAATTC 1 cut(s) 1039
EcoRII CCWGG 3 cut(s) 346, 565, 990
EcoRV GATATC 1 cut(s) 1139
EcoT14I CCWWGG 3 cut(s) 123, 211, 918
EcoT22I ATGCAT 2 cut(s) 293, 373
EcoT38I GRGCYC 1 cut(s) 1286
ErhI CCWWGG 3 cut(s) 123, 211, 918
FaqI GGGAC 2 cut(s) 165, 215
FbaI TGATCA 1 cut(s) 1012
FblI GTMKAC 3 cut(s) 51, 1098, 1148
FokI GGATG 4 cut(s) 322, 988, 1436, 1469
FriOI GRGCYC 1 cut(s) 1286
FspBI CTAG 2 cut(s) 876, 1269
GlaI GCGC 2 cut(s) 887, 1428
GsuI CTGGAG 3 cut(s) 369, 549, 1094
HaeII RGCGCY 1 cut(s) 889
HaeIII GGCC 2 cut(s) 284, 1189
HapII CCGG 6 cut(s) 47, 140, 281, 590, 1122, 1421
HgaI GACGC 1 cut(s) 46
HhaI GCGC 2 cut(s) 888, 1429
Hin1I GRCGYC 3 cut(s) 38, 1095, 1221
Hin6I GCGC 2 cut(s) 886, 1427
HinP1I GCGC 2 cut(s) 886, 1427
HincII GTYRAC 2 cut(s) 1099, 1149
HindII GTYRAC 2 cut(s) 1099, 1149
HindIII AAGCTT 1 cut(s) 203
HinfI GANTC 6 cut(s) 1067, 1100, 1238, 1314, 1358, 1369
HpaII CCGG 6 cut(s) 47, 140, 281, 590, 1122, 1421
HphI GGTGA 2 cut(s) 877, 1155
Hpy166II GTNNAC 4 cut(s) 52, 837, 1099, 1149
Hpy188III TCNNGA 5 cut(s) 133, 240, 455, 876, 949
Hpy8I GTNNAC 4 cut(s) 52, 837, 1099, 1149
Hpy99I CGWCG 6 cut(s) 1094, 1097, 1100, 1205, 1223, 1226
HpyAV CCTTC 3 cut(s) 51, 115, 892
HpyCH4III ACNGT 3 cut(s) 494, 893, 1336
HpyCH4IV ACGT 3 cut(s) 145, 1095, 1221
HpyF3I CTNAG 7 cut(s) 261, 378, 819, 1023, 1167, 1285, 1373
HpySE526I ACGT 3 cut(s) 145, 1095, 1221
Hsp92I GRCGYC 3 cut(s) 38, 1095, 1221
HspAI GCGC 2 cut(s) 886, 1427
Ksp22I TGATCA 1 cut(s) 1012
Kzo9I GATC 4 cut(s) 245, 945, 1012, 1192
LmnI GCTCC 3 cut(s) 564, 683, 1294
LweI GCATC 6 cut(s) 126, 283, 358, 804, 857, 1414
MaeI CTAG 2 cut(s) 876, 1269
MaeII ACGT 3 cut(s) 145, 1095, 1221
MaeIII GTNAC 1 cut(s) 467
MalI GATC 4 cut(s) 247, 947, 1014, 1194
MboI GATC 4 cut(s) 245, 945, 1012, 1192
MboII GAAGA 7 cut(s) 50, 185, 400, 420, 423, 964, 1146
MhlI GDGCHC 4 cut(s) 587, 688, 732, 1286
MluCI AATT 8 cut(s) 97, 165, 184, 409, 740, 1039, 1244, 1388
MlyI GAGTC 1 cut(s) 1094
Mph1103I ATGCAT 2 cut(s) 293, 373
MseI TTAA 6 cut(s) 84, 201, 297, 579, 1227, 1478
MslI CAYNNNNRTG 1 cut(s) 216
MspA1I CMGCKG 1 cut(s) 776
MspI CCGG 6 cut(s) 47, 140, 281, 590, 1122, 1421
MspR9I CCNGG 3 cut(s) 348, 567, 992
Mva1269I GAATGC 2 cut(s) 256, 371
MvaI CCWGG 3 cut(s) 348, 567, 992
NcoI CCATGG 2 cut(s) 123, 211
NdeII GATC 4 cut(s) 245, 945, 1012, 1192
NlaIV GGNNCC 2 cut(s) 181, 285
NsiI ATGCAT 2 cut(s) 293, 373
NspI RCATGY 2 cut(s) 295, 773
NspV TTCGAA 2 cut(s) 799, 1361
PaeI GCATGC 1 cut(s) 773
PaeR7I CTCGAG 1 cut(s) 1439
PagI TCATGA 1 cut(s) 454
PcsI WCGNNNNNNNCGW 1 cut(s) 830
PctI GAATGC 2 cut(s) 256, 371
PfeI GAWTC 5 cut(s) 1067, 1238, 1314, 1358, 1369
PflFI GACNNNGTC 1 cut(s) 1094
PleI GAGTC 1 cut(s) 1094
PpsI GAGTC 1 cut(s) 1094
Ppu21I YACGTR 1 cut(s) 146
PpuMI RGGWCCY 1 cut(s) 353
PshBI ATTAAT 1 cut(s) 84
Psp124BI GAGCTC 1 cut(s) 1286
Psp5II RGGWCCY 1 cut(s) 353
Psp6I CCWGG 3 cut(s) 346, 565, 990
PspGI CCWGG 3 cut(s) 346, 565, 990
PspN4I GGNNCC 2 cut(s) 181, 285
PspPI GGNCC 6 cut(s) 161, 179, 283, 344, 353, 1188
PspPPI RGGWCCY 1 cut(s) 353
PspXI VCTCGAGB 1 cut(s) 1439
PstI CTGCAG 2 cut(s) 1056, 1311
PsyI GACNNNGTC 1 cut(s) 1094
PvuII CAGCTG 1 cut(s) 776
RsaI GTAC 2 cut(s) 144, 795
RsaNI GTAC 2 cut(s) 143, 794
RseI CAYNNNNRTG 1 cut(s) 216
SacI GAGCTC 1 cut(s) 1286
SalI GTCGAC 2 cut(s) 1097, 1147
SaqAI TTAA 6 cut(s) 84, 201, 297, 579, 1227, 1478
Sau3AI GATC 4 cut(s) 245, 945, 1012, 1192
Sau96I GGNCC 6 cut(s) 161, 179, 283, 344, 353, 1188
SchI GAGTC 1 cut(s) 1094
ScrFI CCNGG 3 cut(s) 348, 567, 992
SduI GDGCHC 4 cut(s) 587, 688, 732, 1286
SfaNI GCATC 6 cut(s) 126, 283, 358, 804, 857, 1414
SfcI CTRYAG 2 cut(s) 1052, 1307
Sfr274I CTCGAG 1 cut(s) 1439
SfuI TTCGAA 2 cut(s) 799, 1361
SinI GGWCC 4 cut(s) 161, 179, 344, 353
SlaI CTCGAG 1 cut(s) 1439
SmiMI CAYNNNNRTG 1 cut(s) 216
SmlI CTYRAG 1 cut(s) 1439
SmoI CTYRAG 1 cut(s) 1439
SphI GCATGC 1 cut(s) 773
Sse9I AATT 8 cut(s) 97, 165, 184, 409, 740, 1039, 1244, 1388
SsiI CCGC 3 cut(s) 646, 908, 1077
SspMI CTAG 2 cut(s) 876, 1269
SstI GAGCTC 1 cut(s) 1286
StyD4I CCNGG 3 cut(s) 346, 565, 990
StyI CCWWGG 3 cut(s) 123, 211, 918
TaaI ACNGT 3 cut(s) 494, 893, 1336
TaiI ACGT 3 cut(s) 148, 1098, 1224
TaqI TCGA 8 cut(s) 189, 416, 799, 1098, 1103, 1148, 1361, 1440
TasI AATT 8 cut(s) 97, 165, 184, 409, 740, 1039, 1244, 1388
TatI WGTACW 1 cut(s) 793
TauI GCSGC 1 cut(s) 911
TfiI GAWTC 5 cut(s) 1067, 1238, 1314, 1358, 1369
Tru1I TTAA 6 cut(s) 84, 201, 297, 579, 1227, 1478
Tru9I TTAA 6 cut(s) 84, 201, 297, 579, 1227, 1478
TscAI CASTG 3 cut(s) 693, 1027, 1257
TspDTI ATGAA 3 cut(s) 587, 775, 992
TspGWI ACGGA 5 cut(s) 57, 503, 738, 1281, 1338
TspRI CASTG 3 cut(s) 693, 1027, 1257
Tth111I GACNNNGTC 1 cut(s) 1094
VpaK11BI GGWCC 4 cut(s) 161, 179, 344, 353
VspI ATTAAT 1 cut(s) 84
XapI RAATTY 2 cut(s) 740, 1039
XbaI TCTAGA 1 cut(s) 875
XceI RCATGY 2 cut(s) 295, 773
XcmI CCANNNNNNNNNTGG 3 cut(s) 121, 190, 218
XhoI CTCGAG 1 cut(s) 1439
XmiI GTMKAC 3 cut(s) 51, 1098, 1148
XspI CTAG 2 cut(s) 876, 1269
ZraI GACGTC 2 cut(s) 1096, 1222
Zsp2I ATGCAT 2 cut(s) 293, 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.