pycom01g13820

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Reverse (-)
14182195 .. 14184487
2293 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g13820.3

Sequence Viewer

Length: 1344 bp
ATGCGGCAGGCCCCGTTCACGTTCCTAAACCCCAAAGACTCGAAAGTAGAAAGCGTGTGCTCACCAGACGACGTCGTCTTCATCCTCTCTCAAGCCCTTTCTCTCTCTACAAAACCCAAAACGAAAGTCAATATTTTCAGTTCGACCAAACACACCGATACCTTTCCTCTCCGTCTTCTTCTTCTTCCTCCTCCTCCTTTAGCATTCTCGCTGTCATCGGATTTTTGCCCCTCCGAAAAACCTCTCTCAAGGTTAATTTTTTGGACATTAGAGATGGATTCCTTTTTCAATTTCAAAGCTCCAAGTGACGATTGTGTGCCGTCTGAGCTAGACATTCTCAAATGCCCATTTTTGAGAAACATTAATGAGCCCACCAATTTTTCCTTCGCCTCATCCTTGGCTTTCCCATTGCCCGGACGTGGAGCCAAAGGTCCAATTTTTGAAGATGGTCCCAATTTTGACATGGCGTTTCGGCTTTTCCATGGGAGTGACGGAGTTGTCCCGCTTTCTGGAGGATCATATGTGCATTCTGACATAGTTGAGCCTCAACCAGCTCCACCTGTGTTTAATCCATTAGCTGCAAGGGCAGCTACGATCAGTCTCTCATCCTTTGGTGCTGGAGGGCCATTCAGTTTCGATGCATTCCATAAGAAATGGAAGAACCAGCAAAAGAAATCTAATTCCTCGAAGAAGGATTCTACTTCAAAGGGAGGAAATTCTAATCACGAGGCAGTGAGCAATGAGTGGCTGCAATCCGGAAGCTGTCCGATCGATCCCGCAAAGTCATACCGTGCTGTTAGCGGTGTCATTCCACTAGTCGCAAAGGCTTTTCAGCCCCCTCCAGGCATGAAAATCAAGTGCCCGCCTGCAATAGTTGCTGCCCGAGCAGCCCTGTCGCGAACTGCATTTGCAAAGAACCTCCGCCCGCAACCCCTTCCTGCAAAAGTACTTGTGATTGGAGCAATGGGCATGGCAGCCAATGTTCCTTTAGGTATATGGAGAGAGCACACCCAGAAATTCTCACTATCTTGGTTCGCGGCTGTGCATGCAGCTGTCCCATTCATAGCCGTACTCCGGAAGTCTGTGCTGATGCCTAAATCAGCCATGGCGTTTACCATTGCCGCATCAGTACTTGGACAGGTCATTGGCTCCAGAGCAGAAAGGTACCGTCTGAAAGCAGTGGCTTCTAAAAAAGTACCTCTGACTGAAACCTCCGCTGGTGGTGCGACAAGCGAGTTACAGGTGCTCCAGGTGAAAACCGGTCACTGCAATGCAATTGAGGAGTGGAATTCGGTTGGCCTTCAGGTGGCGCGTCCTTCGTCATCCACAGATGTGTTCTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

448

Amino Acids

48.1

Weight (kDa)

9.54

Isoelectric Point (pI)

45.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 74, 497
AatII GACGTC 1 cut(s) 75
Acc65I GGTACC 1 cut(s) 1164
AccB1I GGYRCC 1 cut(s) 1164
AccII CGCG 3 cut(s) 898, 1037, 1312
AccIII TCCGGA 2 cut(s) 755, 1074
AclWI GGATC 2 cut(s) 523, 767
AcsI RAATTY 3 cut(s) 715, 1016, 1288
AcuI CTGAAG 1 cut(s) 1286
AcyI GRCGYC 1 cut(s) 72
AfaI GTAC 5 cut(s) 948, 1071, 1131, 1166, 1197
AfiI CCNNNNNNNGG 6 cut(s) 413, 419, 509, 842, 1074, 1306
AgeI ACCGGT 1 cut(s) 1259
AgsI TTSAA 4 cut(s) 289, 295, 443, 705
AhlI ACTAGT 1 cut(s) 814
AjiI CACGTC 1 cut(s) 419
AjnI CCWGG 2 cut(s) 841, 1248
AjuI GAANNNNNNNTTGG 2 cut(s) 368, 400
AleI CACNNNNGTG 1 cut(s) 1331
AluBI AGCT 7 cut(s) 299, 328, 554, 578, 590, 762, 1052
AluI AGCT 7 cut(s) 299, 328, 554, 578, 590, 762, 1052
Alw21I GWGCWC 3 cut(s) 62, 1008, 1248
Alw26I GTCTC 1 cut(s) 605
AlwI GGATC 2 cut(s) 523, 767
Ama87I CYCGRG 1 cut(s) 882
Aor13HI TCCGGA 2 cut(s) 755, 1074
AoxI GGCC 3 cut(s) 9, 623, 1297
ApeKI GCWGC 7 cut(s) 578, 587, 748, 878, 887, 974, 1049
ApoI RAATTY 3 cut(s) 715, 1016, 1288
ArsI GACNNNNNNTTYG 2 cut(s) 111, 143
AseI ATTAAT 1 cut(s) 363
AsiGI ACCGGT 1 cut(s) 1259
Asp718I GGTACC 1 cut(s) 1164
AspLEI GCGC 1 cut(s) 1312
AspS9I GGNCC 4 cut(s) 10, 431, 449, 623
AsuC2I CCSGG 1 cut(s) 414
AsuHPI GGTGA 2 cut(s) 54, 1264
AvaI CYCGRG 1 cut(s) 882
AvaII GGWCC 2 cut(s) 431, 449
BaeGI GKGCMC 1 cut(s) 863
BanI GGYRCC 1 cut(s) 1164
BanII GRGCYC 1 cut(s) 372
BauI CACGAG 1 cut(s) 725
BbsI GAAGAC 2 cut(s) 70, 167
Bbv12I GWGCWC 3 cut(s) 62, 1008, 1248
BbvI GCAGC 7 cut(s) 565, 599, 735, 865, 899, 986, 1061
BccI CCATC 2 cut(s) 268, 440
BceAI ACGGC 2 cut(s) 304, 1052
BcgI CGANNNNNNTGC 2 cut(s) 876, 910
BciT130I CCWGG 2 cut(s) 843, 1250
BcnI CCSGG 1 cut(s) 414
BcoDI GTCTC 1 cut(s) 605
BcuI ACTAGT 1 cut(s) 814
BfaI CTAG 2 cut(s) 329, 815
BmcAI AGTACT 2 cut(s) 948, 1131
Bme1390I CCNGG 3 cut(s) 414, 843, 1250
Bme18I GGWCC 2 cut(s) 431, 449
BmeT110I CYCGRG 1 cut(s) 882
BmgBI CACGTC 1 cut(s) 419
BmgT120I GGNCC 4 cut(s) 10, 431, 449, 623
BmiI GGNNCC 5 cut(s) 12, 424, 451, 1150, 1166
BmrFI CCNGG 3 cut(s) 414, 843, 1250
BmsI GCATC 3 cut(s) 628, 1080, 1133
BpiI GAAGAC 2 cut(s) 70, 167
BpmI CTGGAG 5 cut(s) 531, 639, 825, 1135, 1232
BpuEI CTTGAG 2 cut(s) 75, 232
BpuMI CCSGG 1 cut(s) 414
Bsa29I ATCGAT 1 cut(s) 771
BsaHI GRCGYC 1 cut(s) 72
BsaJI CCNNGG 3 cut(s) 396, 481, 1104
BsaWI WCCGGW 3 cut(s) 755, 1074, 1259
BsaXI ACNNNNNCTCC 2 cut(s) 1230, 1260
Bsc4I CCNNNNNNNGG 6 cut(s) 413, 419, 509, 842, 1074, 1306
Bse118I RCCGGY 1 cut(s) 1259
Bse3DI GCAATG 5 cut(s) 407, 745, 969, 1116, 1276
BseAI TCCGGA 2 cut(s) 755, 1074
BseBI CCWGG 2 cut(s) 843, 1250
BseCI ATCGAT 1 cut(s) 771
BseDI CCNNGG 3 cut(s) 396, 481, 1104
BseGI GGATG 4 cut(s) 81, 392, 605, 1322
BseLI CCNNNNNNNGG 6 cut(s) 413, 419, 509, 842, 1074, 1306
BseMI GCAATG 5 cut(s) 407, 745, 969, 1116, 1276
BseMII CTCAG 1 cut(s) 315
BseRI GAGGAG 3 cut(s) 180, 183, 1295
BseSI GKGCMC 1 cut(s) 863
BseXI GCAGC 7 cut(s) 565, 599, 735, 865, 899, 986, 1061
Bsh1236I CGCG 3 cut(s) 898, 1037, 1312
Bsh1285I CGRYCG 1 cut(s) 771
BshFI GGCC 3 cut(s) 11, 625, 1299
BshNI GGYRCC 1 cut(s) 1164
BshTI ACCGGT 1 cut(s) 1259
BshVI ATCGAT 1 cut(s) 771
BsiEI CGRYCG 1 cut(s) 771
BsiHKAI GWGCWC 3 cut(s) 62, 1008, 1248
BsiHKCI CYCGRG 1 cut(s) 882
BsiSI CCGG 4 cut(s) 414, 756, 1075, 1260
BslFI GGGAC 3 cut(s) 435, 485, 1040
BslI CCNNNNNNNGG 6 cut(s) 413, 419, 509, 842, 1074, 1306
BsmAI GTCTC 1 cut(s) 605
BsmFI GGGAC 3 cut(s) 435, 485, 1040
BsmI GAATGC 3 cut(s) 203, 526, 641
BsnI GGCC 3 cut(s) 11, 625, 1299
BsoBI CYCGRG 1 cut(s) 882
Bsp1286I GDGCHC 5 cut(s) 62, 372, 863, 1008, 1248
Bsp13I TCCGGA 2 cut(s) 755, 1074
Bsp143I GATC 4 cut(s) 515, 594, 768, 772
Bsp19I CCATGG 2 cut(s) 481, 1104
Bsp68I TCGCGA 1 cut(s) 898
BspANI GGCC 3 cut(s) 11, 625, 1299
BspCNI CTCAG 1 cut(s) 316
BspDI ATCGAT 1 cut(s) 771
BspEI TCCGGA 2 cut(s) 755, 1074
BspFNI CGCG 3 cut(s) 898, 1037, 1312
BspLI GGNNCC 5 cut(s) 12, 424, 451, 1150, 1166
BspPI GGATC 2 cut(s) 523, 767
BspT107I GGYRCC 1 cut(s) 1164
BsrDI GCAATG 5 cut(s) 407, 745, 969, 1116, 1276
BsrFI RCCGGY 1 cut(s) 1259
BssAI RCCGGY 1 cut(s) 1259
BssECI CCNNGG 3 cut(s) 396, 481, 1104
BssMI GATC 4 cut(s) 515, 594, 768, 772
BssNI GRCGYC 1 cut(s) 72
BssSI CACGAG 1 cut(s) 725
BssT1I CCWWGG 3 cut(s) 396, 481, 1104
Bst2BI CACGAG 1 cut(s) 725
Bst2UI CCWGG 2 cut(s) 843, 1250
Bst4CI ACNGT 2 cut(s) 791, 1169
BstACI GRCGYC 1 cut(s) 72
BstAPI GCANNNNNTGC 1 cut(s) 875
BstC8I GCNNGC 5 cut(s) 9, 863, 867, 926, 1047
BstDEI CTNAG 1 cut(s) 324
BstDSI CCRYGG 2 cut(s) 481, 1104
BstF5I GGATG 4 cut(s) 81, 392, 605, 1322
BstFNI CGCG 3 cut(s) 898, 1037, 1312
BstHHI GCGC 1 cut(s) 1312
BstKTI GATC 4 cut(s) 518, 597, 771, 775
BstMAI GTCTC 1 cut(s) 605
BstMBI GATC 4 cut(s) 515, 594, 768, 772
BstMCI CGRYCG 1 cut(s) 771
BstMWI GCNNNNNNNGC 8 cut(s) 325, 584, 587, 875, 884, 887, 1046, 1223
BstNI CCWGG 2 cut(s) 843, 1250
BstNSI RCATGY 1 cut(s) 1049
BstSCI CCNGG 3 cut(s) 412, 841, 1248
BstSLI GKGCMC 1 cut(s) 863
BstUI CGCG 3 cut(s) 898, 1037, 1312
BstV1I GCAGC 7 cut(s) 565, 599, 735, 865, 899, 986, 1061
BstV2I GAAGAC 2 cut(s) 70, 167
Bsu15I ATCGAT 1 cut(s) 771
BsuRI GGCC 3 cut(s) 11, 625, 1299
BsuTUI ATCGAT 1 cut(s) 771
BtgI CCRYGG 2 cut(s) 481, 1104
BtrI CACGTC 1 cut(s) 419
BtsCI GGATG 4 cut(s) 81, 392, 605, 1322
BtsI GCAGTG 3 cut(s) 738, 1185, 1264
BtsIMutI CAGTG 3 cut(s) 738, 1185, 1264
BtuMI TCGCGA 1 cut(s) 898
Cac8I GCNNGC 5 cut(s) 9, 863, 867, 926, 1047
CfoI GCGC 1 cut(s) 1312
Cfr10I RCCGGY 1 cut(s) 1259
Cfr13I GGNCC 4 cut(s) 10, 431, 449, 623
ClaI ATCGAT 1 cut(s) 771
CseI GACGC 1 cut(s) 1301
Csp6I GTAC 5 cut(s) 947, 1070, 1130, 1165, 1196
CspAI ACCGGT 1 cut(s) 1259
CviAII CATG 6 cut(s) 463, 482, 847, 970, 1046, 1105
CviQI GTAC 5 cut(s) 947, 1070, 1130, 1165, 1196
DdeI CTNAG 1 cut(s) 324
DpnI GATC 4 cut(s) 517, 596, 770, 774
DpnII GATC 4 cut(s) 515, 594, 768, 772
DrdI GACNNNNNNGTC 2 cut(s) 74, 497
DseDI GACNNNNNNGTC 2 cut(s) 74, 497
EciI GGCGGA 1 cut(s) 911
Eco130I CCWWGG 3 cut(s) 396, 481, 1104
Eco24I GRGCYC 1 cut(s) 372
Eco47I GGWCC 2 cut(s) 431, 449
Eco57I CTGAAG 1 cut(s) 1286
Eco88I CYCGRG 1 cut(s) 882
EcoO109I RGGNCCY 1 cut(s) 10
EcoRI GAATTC 1 cut(s) 1288
EcoRII CCWGG 2 cut(s) 841, 1248
EcoT14I CCWWGG 3 cut(s) 396, 481, 1104
EcoT22I ATGCAT 1 cut(s) 643
EcoT38I GRGCYC 1 cut(s) 372
ErhI CCWWGG 3 cut(s) 396, 481, 1104
FaeI CATG 6 cut(s) 466, 485, 850, 973, 1049, 1108
FaqI GGGAC 3 cut(s) 435, 485, 1040
FatI CATG 6 cut(s) 462, 481, 846, 969, 1045, 1104
FauI CCCGC 4 cut(s) 510, 784, 870, 933
FauNDI CATATG 1 cut(s) 520
FokI GGATG 4 cut(s) 68, 379, 592, 1309
FriOI GRGCYC 1 cut(s) 372
FspBI CTAG 2 cut(s) 329, 815
GlaI GCGC 1 cut(s) 1311
GsuI CTGGAG 5 cut(s) 531, 639, 825, 1135, 1232
HaeIII GGCC 3 cut(s) 11, 625, 1299
HapII CCGG 4 cut(s) 414, 756, 1075, 1260
HgaI GACGC 1 cut(s) 1301
HhaI GCGC 1 cut(s) 1312
Hin1I GRCGYC 1 cut(s) 72
Hin1II CATG 6 cut(s) 466, 485, 850, 973, 1049, 1108
Hin6I GCGC 1 cut(s) 1310
HinP1I GCGC 1 cut(s) 1310
HinfI GANTC 3 cut(s) 38, 278, 695
HpaII CCGG 4 cut(s) 414, 756, 1075, 1260
HphI GGTGA 2 cut(s) 54, 1264
Hpy166II GTNNAC 2 cut(s) 18, 1113
Hpy188I TCNGA 7 cut(s) 220, 235, 325, 532, 768, 1173, 1203
Hpy188III TCNNGA 6 cut(s) 510, 725, 756, 897, 1075, 1152
Hpy8I GTNNAC 2 cut(s) 18, 1113
Hpy99I CGWCG 2 cut(s) 74, 77
HpyAV CCTTC 5 cut(s) 394, 685, 944, 1310, 1326
HpyCH4III ACNGT 2 cut(s) 791, 1169
HpyCH4IV ACGT 3 cut(s) 20, 72, 418
HpyF10VI GCNNNNNNNGC 8 cut(s) 325, 584, 587, 875, 884, 887, 1046, 1223
HpyF3I CTNAG 1 cut(s) 324
HpySE526I ACGT 3 cut(s) 20, 72, 418
Hsp92I GRCGYC 1 cut(s) 72
Hsp92II CATG 6 cut(s) 466, 485, 850, 973, 1049, 1108
HspAI GCGC 1 cut(s) 1310
Kpn2I TCCGGA 2 cut(s) 755, 1074
KpnI GGTACC 1 cut(s) 1168
Kzo9I GATC 4 cut(s) 515, 594, 768, 772
LmnI GCTCC 6 cut(s) 304, 422, 559, 959, 1154, 1251
Lsp1109I GCAGC 7 cut(s) 565, 599, 735, 865, 899, 986, 1061
LweI GCATC 3 cut(s) 628, 1080, 1133
MaeI CTAG 2 cut(s) 329, 815
MaeII ACGT 3 cut(s) 20, 72, 418
MaeIII GTNAC 4 cut(s) 305, 488, 1236, 1262
MalI GATC 4 cut(s) 517, 596, 770, 774
MboI GATC 4 cut(s) 515, 594, 768, 772
MboII GAAGA 8 cut(s) 70, 167, 170, 173, 176, 455, 670, 700
MfeI CAATTG 1 cut(s) 1275
MhlI GDGCHC 5 cut(s) 62, 372, 863, 1008, 1248
MlyI GAGTC 1 cut(s) 32
Mph1103I ATGCAT 1 cut(s) 643
MroI TCCGGA 2 cut(s) 755, 1074
MseI TTAA 3 cut(s) 254, 363, 567
MslI CAYNNNNRTG 3 cut(s) 486, 1269, 1331
MspA1I CMGCKG 2 cut(s) 1052, 1217
MspI CCGG 4 cut(s) 414, 756, 1075, 1260
MspR9I CCNGG 3 cut(s) 414, 843, 1250
MunI CAATTG 1 cut(s) 1275
Mva1269I GAATGC 3 cut(s) 203, 526, 641
MvaI CCWGG 2 cut(s) 843, 1250
MvnI CGCG 3 cut(s) 898, 1037, 1312
MwoI GCNNNNNNNGC 8 cut(s) 325, 584, 587, 875, 884, 887, 1046, 1223
NciI CCSGG 1 cut(s) 414
NcoI CCATGG 2 cut(s) 481, 1104
NdeI CATATG 1 cut(s) 520
NdeII GATC 4 cut(s) 515, 594, 768, 772
NlaIII CATG 6 cut(s) 466, 485, 850, 973, 1049, 1108
NlaIV GGNNCC 5 cut(s) 12, 424, 451, 1150, 1166
NmuCI GTSAC 3 cut(s) 305, 488, 1262
NruI TCGCGA 1 cut(s) 898
NsiI ATGCAT 1 cut(s) 643
NspI RCATGY 1 cut(s) 1049
OliI CACNNNNGTG 1 cut(s) 1331
PaeI GCATGC 1 cut(s) 1049
PctI GAATGC 3 cut(s) 203, 526, 641
PfeI GAWTC 2 cut(s) 278, 695
PflFI GACNNNGTC 2 cut(s) 71, 74
PinAI ACCGGT 1 cut(s) 1259
Ple19I CGATCG 1 cut(s) 771
PleI GAGTC 1 cut(s) 32
PpsI GAGTC 1 cut(s) 32
PshBI ATTAAT 1 cut(s) 363
Psp6I CCWGG 2 cut(s) 841, 1248
PspGI CCWGG 2 cut(s) 841, 1248
PspN4I GGNNCC 5 cut(s) 12, 424, 451, 1150, 1166
PspPI GGNCC 4 cut(s) 10, 431, 449, 623
PsyI GACNNNGTC 2 cut(s) 71, 74
PvuI CGATCG 1 cut(s) 771
PvuII CAGCTG 1 cut(s) 1052
RruI TCGCGA 1 cut(s) 898
RsaI GTAC 5 cut(s) 948, 1071, 1131, 1166, 1197
RsaNI GTAC 5 cut(s) 947, 1070, 1130, 1165, 1196
RseI CAYNNNNRTG 3 cut(s) 486, 1269, 1331
SaqAI TTAA 3 cut(s) 254, 363, 567
Sau3AI GATC 4 cut(s) 515, 594, 768, 772
Sau96I GGNCC 4 cut(s) 10, 431, 449, 623
ScaI AGTACT 2 cut(s) 948, 1131
SchI GAGTC 1 cut(s) 32
ScrFI CCNGG 3 cut(s) 414, 843, 1250
SduI GDGCHC 5 cut(s) 62, 372, 863, 1008, 1248
SfaNI GCATC 3 cut(s) 628, 1080, 1133
SinI GGWCC 2 cut(s) 431, 449
SmiMI CAYNNNNRTG 3 cut(s) 486, 1269, 1331
SmlI CTYRAG 2 cut(s) 90, 247
SmoI CTYRAG 2 cut(s) 90, 247
SpeI ACTAGT 1 cut(s) 814
SphI GCATGC 1 cut(s) 1049
SspI AATATT 1 cut(s) 133
SspMI CTAG 2 cut(s) 329, 815
StyD4I CCNGG 3 cut(s) 412, 841, 1248
StyI CCWWGG 3 cut(s) 396, 481, 1104
TaaI ACNGT 2 cut(s) 791, 1169
TaiI ACGT 3 cut(s) 23, 75, 421
TaqI TCGA 5 cut(s) 41, 143, 636, 686, 771
TatI WGTACW 2 cut(s) 946, 1129
TauI GCSGC 3 cut(s) 7, 1040, 1124
TfiI GAWTC 2 cut(s) 278, 695
Tru1I TTAA 3 cut(s) 254, 363, 567
Tru9I TTAA 3 cut(s) 254, 363, 567
TscAI CASTG 3 cut(s) 738, 1185, 1271
TseFI GTSAC 3 cut(s) 305, 488, 1262
TseI GCWGC 7 cut(s) 578, 587, 748, 878, 887, 974, 1049
Tsp45I GTSAC 3 cut(s) 305, 488, 1262
TspDTI ATGAA 3 cut(s) 70, 863, 1051
TspGWI ACGGA 2 cut(s) 161, 507
TspRI CASTG 3 cut(s) 738, 1185, 1271
Tth111I GACNNNGTC 2 cut(s) 71, 74
VpaK11BI GGWCC 2 cut(s) 431, 449
VspI ATTAAT 1 cut(s) 363
XapI RAATTY 3 cut(s) 715, 1016, 1288
XceI RCATGY 1 cut(s) 1049
XcmI CCANNNNNNNNNTGG 1 cut(s) 460
XspI CTAG 2 cut(s) 329, 815
ZraI GACGTC 1 cut(s) 73
ZrmI AGTACT 2 cut(s) 948, 1131
Zsp2I ATGCAT 1 cut(s) 643
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.