Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8207472.1

Orthogroup ID

OG0007057

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 651

Gene Structure 651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8207472.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

aactctaatcatgaggcagcgagtaacgagtggctgcaaagtggaaactgtccgattgcaaagtcattccgtgctgttagtggtgtcattccacttgttgcaaaggctttgcagctccctccaggcatgaaagttaagtgcccaccggcaatagttgcagcacgagcagctctggcaaaaactgcatttgcaaagaacctccgcccacaacccctgcctgcaaaagttcttgtgattggagcactgggaatggcagccaatgttcctttagggatatggagagagcacaccaagaaattctctccgtcttggtttgctgctgtgcatgcagctgttccattcatagctgtacttcgaaagtctgtgttgatgcctaagtcggctatggcgtttaccattgcagcatctatattaggacaggtgattgggtctagagcagagcgctaccgtctgaaggcaaaggcggctaaaaccttggcattgactgaaacctctgttcagatcaagaagactgaaacctctgttgttgggatgaaaagccagttccaggtggttgaagcgaaatctgatcattgcactgagattgaggaatggaattcagttgctctgcaggtctcacgcccttcttcatcaaccgatgtgttctgctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

216

Amino Acids

23.07

Weight (kDa)

10.07

Isoelectric Point (pI)

45.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25030 AT4G25030
fragaria_vesca	FvH4_7g19880 FvH4_7g19880
malus_domestica	MD01G1110900.v1.1 MD05G1255700.v1.1 MD07G1177000.v1.1
prunus_persica	Prupe.2G215800_v2.0.a1
pyrus_communis	pycom01g13820 pycom07g17110
rosa_chinensis	RchiOBHm_Chr1g0363861
rosa_laevigata	RLG00000027540
rosa_multiflora	Rmu_co8207472.1_g000001 Rmu_sc0002483.1_g000002 Rmu_sc0041994.1_g000001
rosa_roxburghii	Rroxscaffold_4G00292910
rosa_rugosa	Rorug01G0310000 Rorug01G0310100 Rorug01G0310200 Rorug01G0310300
rosa_samantha	Rh1AG318400 Rh1BG281600 Rh1CG298000 Rh1DG312900
rosa_wichuraiana	Rw1G028260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	601
AciI	CCGC	2 cut(s)	202, 464
AcsI	RAATTY	2 cut(s)	296, 595
AcuI	CTGAAG	1 cut(s)	473
AfaI	GTAC	1 cut(s)	351
AfeI	AGCGCT	1 cut(s)	443
AfiI	CCNNNNNNNGG	2 cut(s)	454, 547
AgsI	TTSAA	1 cut(s)	557
AjnI	CCWGG	2 cut(s)	121, 546
AluBI	AGCT	4 cut(s)	115, 170, 332, 347
AluI	AGCT	4 cut(s)	115, 170, 332, 347
Alw21I	GWGCWC	2 cut(s)	244, 288
Alw26I	GTCTC	1 cut(s)	619
Aor51HI	AGCGCT	1 cut(s)	443
ApeKI	GCWGC	9 cut(s)	17, 34, 112, 158, 167, 254, 317, 329, 401
ApoI	RAATTY	2 cut(s)	296, 595
AspLEI	GCGC	1 cut(s)	444
AsuHPI	GGTGA	1 cut(s)	433
AsuII	TTCGAA	1 cut(s)	355
BaeGI	GKGCMC	1 cut(s)	143
BauI	CACGAG	1 cut(s)	162
BbsI	GAAGAC	1 cut(s)	515
Bbv12I	GWGCWC	2 cut(s)	244, 288
BbvI	GCAGC	9 cut(s)	21, 29, 124, 170, 179, 266, 304, 341, 413
BciT130I	CCWGG	2 cut(s)	123, 548
BclI	TGATCA	1 cut(s)	568
BcoDI	GTCTC	1 cut(s)	619
BfaI	CTAG	1 cut(s)	432
BfmI	CTRYAG	1 cut(s)	608
BfoI	RGCGCY	1 cut(s)	445
BfuAI	ACCTGC	1 cut(s)	601
Bme1390I	CCNGG	2 cut(s)	123, 548
BmrFI	CCNGG	2 cut(s)	123, 548
BmrI	ACTGGG	1 cut(s)	254
BmsI	GCATC	2 cut(s)	360, 413
BmuI	ACTGGG	1 cut(s)	254
BpiI	GAAGAC	1 cut(s)	515
BpmI	CTGGAG	1 cut(s)	105
Bpu14I	TTCGAA	1 cut(s)	355
BsaI	GGTCTC	1 cut(s)	619
BsaJI	CCNNGG	1 cut(s)	474
Bsc4I	CCNNNNNNNGG	2 cut(s)	454, 547
Bse118I	RCCGGY	1 cut(s)	145
Bse1I	ACTGG	2 cut(s)	249, 541
Bse3DI	GCAATG	2 cut(s)	396, 571
BseBI	CCWGG	2 cut(s)	123, 548
BseDI	CCNNGG	1 cut(s)	474
BseGI	GGATG	1 cut(s)	537
BseLI	CCNNNNNNNGG	2 cut(s)	454, 547
BseMI	GCAATG	2 cut(s)	396, 571
BseMII	CTCAG	1 cut(s)	570
BseNI	ACTGG	2 cut(s)	249, 541
BseSI	GKGCMC	1 cut(s)	143
BseXI	GCAGC	9 cut(s)	21, 29, 124, 170, 179, 266, 304, 341, 413
BsiHKAI	GWGCWC	2 cut(s)	244, 288
BsiSI	CCGG	1 cut(s)	146
BslI	CCNNNNNNNGG	2 cut(s)	454, 547
BsmAI	GTCTC	1 cut(s)	619
Bso31I	GGTCTC	1 cut(s)	619
Bsp119I	TTCGAA	1 cut(s)	355
Bsp1286I	GDGCHC	3 cut(s)	143, 244, 288
Bsp143I	GATC	2 cut(s)	501, 568
BspACI	CCGC	2 cut(s)	202, 464
BspCNI	CTCAG	1 cut(s)	571
BspHI	TCATGA	1 cut(s)	10
BspMAI	CTGCAG	1 cut(s)	612
BspMI	ACCTGC	1 cut(s)	601
BspT104I	TTCGAA	1 cut(s)	355
BspTNI	GGTCTC	1 cut(s)	619
BsrDI	GCAATG	2 cut(s)	396, 571
BsrFI	RCCGGY	1 cut(s)	145
BsrI	ACTGG	2 cut(s)	249, 541
BssAI	RCCGGY	1 cut(s)	145
BssECI	CCNNGG	1 cut(s)	474
BssMI	GATC	2 cut(s)	501, 568
BssSI	CACGAG	1 cut(s)	162
BssT1I	CCWWGG	1 cut(s)	474
Bst2BI	CACGAG	1 cut(s)	162
Bst2UI	CCWGG	2 cut(s)	123, 548
Bst4CI	ACNGT	2 cut(s)	50, 449
BstAPI	GCANNNNNTGC	2 cut(s)	155, 182
BstBI	TTCGAA	1 cut(s)	355
BstC8I	GCNNGC	2 cut(s)	219, 327
BstDEI	CTNAG	2 cut(s)	375, 579
BstF5I	GGATG	1 cut(s)	537
BstH2I	RGCGCY	1 cut(s)	445
BstHHI	GCGC	1 cut(s)	444
BstKTI	GATC	2 cut(s)	504, 571
BstMAI	GTCTC	1 cut(s)	619
BstMBI	GATC	2 cut(s)	501, 568
BstMWI	GCNNNNNNNGC	7 cut(s)	155, 164, 167, 173, 182, 326, 464
BstNI	CCWGG	2 cut(s)	123, 548
BstNSI	RCATGY	1 cut(s)	329
BstSCI	CCNGG	2 cut(s)	121, 546
BstSFI	CTRYAG	1 cut(s)	608
BstSLI	GKGCMC	1 cut(s)	143
BstV1I	GCAGC	9 cut(s)	21, 29, 124, 170, 179, 266, 304, 341, 413
BstV2I	GAAGAC	1 cut(s)	515
BtsCI	GGATG	1 cut(s)	537
BtsIMutI	CAGTG	2 cut(s)	242, 576
BveI	ACCTGC	1 cut(s)	601
Cac8I	GCNNGC	2 cut(s)	219, 327
CciI	TCATGA	1 cut(s)	10
CfoI	GCGC	1 cut(s)	444
Cfr10I	RCCGGY	1 cut(s)	145
Csp6I	GTAC	1 cut(s)	350
CviAII	CATG	3 cut(s)	11, 127, 326
CviQI	GTAC	1 cut(s)	350
DdeI	CTNAG	2 cut(s)	375, 579
DpnI	GATC	2 cut(s)	503, 570
DpnII	GATC	2 cut(s)	501, 568
EciI	GGCGGA	1 cut(s)	191
Eco130I	CCWWGG	1 cut(s)	474
Eco31I	GGTCTC	1 cut(s)	619
Eco47III	AGCGCT	1 cut(s)	443
Eco57I	CTGAAG	1 cut(s)	473
EcoRI	GAATTC	1 cut(s)	595
EcoRII	CCWGG	2 cut(s)	121, 546
EcoT14I	CCWWGG	1 cut(s)	474
ErhI	CCWWGG	1 cut(s)	474
FaeI	CATG	3 cut(s)	14, 130, 329
FaiI	YATR	7 cut(s)	12, 128, 277, 327, 344, 386, 410
FatI	CATG	3 cut(s)	10, 126, 325
FbaI	TGATCA	1 cut(s)	568
FokI	GGATG	1 cut(s)	544
FspBI	CTAG	1 cut(s)	432
GlaI	GCGC	1 cut(s)	443
GsuI	CTGGAG	1 cut(s)	105
HaeII	RGCGCY	1 cut(s)	445
HapII	CCGG	1 cut(s)	146
HhaI	GCGC	1 cut(s)	444
Hin1II	CATG	3 cut(s)	14, 130, 329
Hin6I	GCGC	1 cut(s)	442
HinP1I	GCGC	1 cut(s)	442
HpaII	CCGG	1 cut(s)	146
HphI	GGTGA	1 cut(s)	433
Hpy166II	GTNNAC	1 cut(s)	393
Hpy188I	TCNGA	4 cut(s)	54, 453, 501, 568
Hpy188III	TCNNGA	3 cut(s)	11, 432, 505
Hpy8I	GTNNAC	1 cut(s)	393
HpyAV	CCTTC	2 cut(s)	448, 633
HpyCH4III	ACNGT	2 cut(s)	50, 449
HpyF10VI	GCNNNNNNNGC	7 cut(s)	155, 164, 167, 173, 182, 326, 464
HpyF3I	CTNAG	2 cut(s)	375, 579
Hsp92II	CATG	3 cut(s)	14, 130, 329
HspAI	GCGC	1 cut(s)	442
Ksp22I	TGATCA	1 cut(s)	568
Kzo9I	GATC	2 cut(s)	501, 568
LmnI	GCTCC	2 cut(s)	120, 239
Lsp1109I	GCAGC	9 cut(s)	21, 29, 124, 170, 179, 266, 304, 341, 413
LweI	GCATC	2 cut(s)	360, 413
MaeI	CTAG	1 cut(s)	432
MaeIII	GTNAC	1 cut(s)	23
MalI	GATC	2 cut(s)	503, 570
MboI	GATC	2 cut(s)	501, 568
MboII	GAAGA	2 cut(s)	520, 618
MhlI	GDGCHC	3 cut(s)	143, 244, 288
MluCI	AATT	2 cut(s)	296, 595
MnlI	CCTC	6 cut(s)	7, 129, 209, 502, 529, 580
MseI	TTAA	1 cut(s)	135
MspA1I	CMGCKG	1 cut(s)	332
MspI	CCGG	1 cut(s)	146
MspR9I	CCNGG	2 cut(s)	123, 548
MvaI	CCWGG	2 cut(s)	123, 548
MwoI	GCNNNNNNNGC	7 cut(s)	155, 164, 167, 173, 182, 326, 464
NdeII	GATC	2 cut(s)	501, 568
NlaIII	CATG	3 cut(s)	14, 130, 329
NspI	RCATGY	1 cut(s)	329
NspV	TTCGAA	1 cut(s)	355
PaeI	GCATGC	1 cut(s)	329
PagI	TCATGA	1 cut(s)	10
PcsI	WCGNNNNNNNCGW	1 cut(s)	386
Psp6I	CCWGG	2 cut(s)	121, 546
PspGI	CCWGG	2 cut(s)	121, 546
PstI	CTGCAG	1 cut(s)	612
PvuII	CAGCTG	1 cut(s)	332
RsaI	GTAC	1 cut(s)	351
RsaNI	GTAC	1 cut(s)	350
SaqAI	TTAA	1 cut(s)	135
Sau3AI	GATC	2 cut(s)	501, 568
ScrFI	CCNGG	2 cut(s)	123, 548
SduI	GDGCHC	3 cut(s)	143, 244, 288
SfaNI	GCATC	2 cut(s)	360, 413
SfcI	CTRYAG	1 cut(s)	608
SfuI	TTCGAA	1 cut(s)	355
SphI	GCATGC	1 cut(s)	329
Sse9I	AATT	2 cut(s)	296, 595
SsiI	CCGC	2 cut(s)	202, 464
SspMI	CTAG	1 cut(s)	432
StyD4I	CCNGG	2 cut(s)	121, 546
StyI	CCWWGG	1 cut(s)	474
TaaI	ACNGT	2 cut(s)	50, 449
TaqI	TCGA	1 cut(s)	355
TasI	AATT	2 cut(s)	296, 595
TatI	WGTACW	1 cut(s)	349
TauI	GCSGC	1 cut(s)	467
Tru1I	TTAA	1 cut(s)	135
Tru9I	TTAA	1 cut(s)	135
TscAI	CASTG	2 cut(s)	249, 583
TseI	GCWGC	9 cut(s)	17, 34, 112, 158, 167, 254, 317, 329, 401
TspDTI	ATGAA	4 cut(s)	143, 331, 548, 618
TspGWI	ACGGA	2 cut(s)	59, 294
TspRI	CASTG	2 cut(s)	249, 583
XapI	RAATTY	2 cut(s)	296, 595
XbaI	TCTAGA	1 cut(s)	431
XceI	RCATGY	1 cut(s)	329
XspI	CTAG	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.