Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0007057

Physical Location & Seq

Genomic Coordinates Forward (+)

13101281 .. 13103523

Gene Structure 2243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00292910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGGAGTGCTTTTTCAAAGGTGCGAATGAGGACTTGGCGCCTTCTCCGGTAGACATTCTTCGGTGTCCATTTTTGAGGAACATTAATGAGCCAACCAATTTTTCCTTCTCCTCCATGTCGTCCATGGCTTTCCCGATGCCGGTACGTGCAGCCAGCAAAGGTCCAATTTTTGAAGATGGTCCCAATTTTGACATGGCATTTAAGCTTTTCCATGGGAGTGATGGAGTAGTCCCTCTTTCTGGACGATCATTTGAGCATTCTGAGAAAGTTGAGCATCAACCAGCCCCATGCATGTTTAATCCATTAGCTGCAAAGGCAGCTACTATCAGTCTCTCATCCTTTGGACCTGGAGGACCTTTCGGCTTTGATGCATTCTCTGAGAAGTGGAAGAAAATGCAAAAGAAGTCTAATTCCTCGAAAAAGGGATCTTCTTCAAAGGTAATAATCTGTATTTGTGATTTACTTACCAATTTAGCATTTGATGTTTCAGGAGGAAACTCTAATCACGAGGCAGCGAGTAACGAGTGGCTGCAAAGTGGAAACTGTCCGATTGCAAAGTCATTCCGTGCTGTTAGTGGTGTCATTCCACTTGTTGCAAAGGCTTTGCAGCTCCCTCCAGGCATGAAAGTTAAGTGCCCACCGGCAATAGTTGCAGCACGAGCAGCTCTGGCAAAAACTGCATTTGCAAAGAACCTCCGCCCCCAACCCCTGCCCGCAAAAGTTCTTGTGATTGGAGCACTGGGAATGGCAGCCAATGTTCCTTTAGGGATATGGAGAGAGCATACCAAGAAATTCTCTCCATCTTGGTTTGCGGCCGTGCATGCAGCTGTTCCATTCATAGCTGTACTTCGAAAGTCTGTGTTGATGCCTAAGTCGGCTATGGCGTTTACCATTGCAGCATCTATATTAGGACAGGTGATTGGGTCTAGAGCAGAGCGCTACCGTCTGAAGGCAAAGGCGGCTAAAACCTTGGCTTTGACTGAAACCTCTGTTCAGATCAAGAAGACTGAAACCTCTGTTGTTGGGATGAAAAGCCAGTTCCAGGTGGTTGAAGCGAAATCTGATCATTGCACTGAGATTGAGGAATGGAATTCAGTTGCTCTGCAGGTGTCACGCCCTTCTTCATCAACCGATGTGTTCTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

381

Amino Acids

40.88

Weight (kDa)

9.53

Isoelectric Point (pI)

48.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25030 AT4G25030
fragaria_vesca	FvH4_7g19880 FvH4_7g19880
malus_domestica	MD01G1110900.v1.1 MD05G1255700.v1.1 MD07G1177000.v1.1
prunus_persica	Prupe.2G215800_v2.0.a1
pyrus_communis	pycom01g13820 pycom07g17110
rosa_chinensis	RchiOBHm_Chr1g0363861
rosa_laevigata	RLG00000027540
rosa_multiflora	Rmu_co8207472.1_g000001 Rmu_sc0002483.1_g000002 Rmu_sc0041994.1_g000001
rosa_roxburghii	Rroxscaffold_4G00292910
rosa_rugosa	Rorug01G0310000 Rorug01G0310100 Rorug01G0310200 Rorug01G0310300
rosa_samantha	Rh1AG318400 Rh1BG281600 Rh1CG298000 Rh1DG312900
rosa_wichuraiana	Rw1G028260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1096
Acc36I	ACCTGC	1 cut(s)	1096
AccB1I	GGYRCC	1 cut(s)	37
AccI	GTMKAC	1 cut(s)	51
AciI	CCGC	4 cut(s)	697, 714, 812, 959
AclWI	GGATC	1 cut(s)	433
AcoI	YGGCCR	1 cut(s)	813
AcsI	RAATTY	2 cut(s)	791, 1090
AcuI	CTGAAG	1 cut(s)	968
AcyI	GRCGYC	1 cut(s)	38
AfaI	GTAC	2 cut(s)	144, 846
AfeI	AGCGCT	1 cut(s)	938
AfiI	CCNNNNNNNGG	4 cut(s)	139, 239, 949, 1042
AgsI	TTSAA	4 cut(s)	16, 173, 435, 1052
AjnI	CCWGG	3 cut(s)	346, 616, 1041
AjuI	GAANNNNNNNTTGG	6 cut(s)	17, 49, 85, 89, 117, 121
AluBI	AGCT	7 cut(s)	205, 308, 320, 610, 665, 827, 842
AluI	AGCT	7 cut(s)	205, 308, 320, 610, 665, 827, 842
Alw21I	GWGCWC	1 cut(s)	739
Alw26I	GTCTC	1 cut(s)	335
AlwI	GGATC	1 cut(s)	433
Aor51HI	AGCGCT	1 cut(s)	938
AoxI	GGCC	1 cut(s)	813
ApoI	RAATTY	2 cut(s)	791, 1090
AseI	ATTAAT	1 cut(s)	84
AspLEI	GCGC	2 cut(s)	40, 939
AspS9I	GGNCC	4 cut(s)	161, 179, 344, 353
AsuHPI	GGTGA	1 cut(s)	928
AsuII	TTCGAA	1 cut(s)	850
AvaII	GGWCC	4 cut(s)	161, 179, 344, 353
BaeGI	GKGCMC	1 cut(s)	638
BanI	GGYRCC	1 cut(s)	37
BarI	GAAGNNNNNNTAC	2 cut(s)	42, 74
BauI	CACGAG	2 cut(s)	506, 657
BbsI	GAAGAC	1 cut(s)	1010
Bbv12I	GWGCWC	1 cut(s)	739
BccI	CCATC	3 cut(s)	170, 215, 808
BceAI	ACGGC	1 cut(s)	800
BciT130I	CCWGG	3 cut(s)	348, 618, 1043
BclI	TGATCA	1 cut(s)	1063
BcoDI	GTCTC	1 cut(s)	335
BfaI	CTAG	1 cut(s)	927
BfmI	CTRYAG	1 cut(s)	1103
BfoI	RGCGCY	2 cut(s)	41, 940
BfuAI	ACCTGC	1 cut(s)	1096
Bme1390I	CCNGG	3 cut(s)	348, 618, 1043
Bme18I	GGWCC	4 cut(s)	161, 179, 344, 353
BmgT120I	GGNCC	4 cut(s)	161, 179, 344, 353
BmiI	GGNNCC	2 cut(s)	39, 181
BmrFI	CCNGG	3 cut(s)	348, 618, 1043
BmrI	ACTGGG	1 cut(s)	749
BmsI	GCATC	5 cut(s)	126, 283, 358, 855, 908
BmuI	ACTGGG	1 cut(s)	749
BpiI	GAAGAC	1 cut(s)	1010
BpmI	CTGGAG	2 cut(s)	369, 600
Bpu14I	TTCGAA	1 cut(s)	850
BsaAI	YACGTR	1 cut(s)	146
BsaHI	GRCGYC	1 cut(s)	38
BsaJI	CCNNGG	3 cut(s)	123, 211, 969
BsaWI	WCCGGW	1 cut(s)	46
Bsc4I	CCNNNNNNNGG	4 cut(s)	139, 239, 949, 1042
Bse118I	RCCGGY	2 cut(s)	139, 640
Bse1I	ACTGG	2 cut(s)	744, 1036
Bse3DI	GCAATG	2 cut(s)	891, 1066
BseBI	CCWGG	3 cut(s)	348, 618, 1043
BseDI	CCNNGG	3 cut(s)	123, 211, 969
BseGI	GGATG	2 cut(s)	335, 1032
BseLI	CCNNNNNNNGG	4 cut(s)	139, 239, 949, 1042
BseMI	GCAATG	2 cut(s)	891, 1066
BseMII	CTCAG	3 cut(s)	252, 369, 1065
BseNI	ACTGG	2 cut(s)	744, 1036
BseRI	GAGGAG	1 cut(s)	100
BseSI	GKGCMC	1 cut(s)	638
BseX3I	CGGCCG	1 cut(s)	813
BsgI	GTGCAG	1 cut(s)	168
Bsh1285I	CGRYCG	1 cut(s)	816
BshFI	GGCC	1 cut(s)	815
BshNI	GGYRCC	1 cut(s)	37
BsiEI	CGRYCG	1 cut(s)	816
BsiHKAI	GWGCWC	1 cut(s)	739
BsiSI	CCGG	3 cut(s)	47, 140, 641
BslFI	GGGAC	2 cut(s)	165, 215
BslI	CCNNNNNNNGG	4 cut(s)	139, 239, 949, 1042
BsmAI	GTCTC	1 cut(s)	335
BsmFI	GGGAC	2 cut(s)	165, 215
BsmI	GAATGC	2 cut(s)	256, 371
BsnI	GGCC	1 cut(s)	815
Bsp119I	TTCGAA	1 cut(s)	850
Bsp1286I	GDGCHC	2 cut(s)	638, 739
Bsp143I	GATC	4 cut(s)	245, 425, 996, 1063
Bsp19I	CCATGG	2 cut(s)	123, 211
BspACI	CCGC	4 cut(s)	697, 714, 812, 959
BspANI	GGCC	1 cut(s)	815
BspCNI	CTCAG	3 cut(s)	253, 370, 1066
BspLI	GGNNCC	2 cut(s)	39, 181
BspMAI	CTGCAG	1 cut(s)	1107
BspMI	ACCTGC	1 cut(s)	1096
BspPI	GGATC	1 cut(s)	433
BspT104I	TTCGAA	1 cut(s)	850
BspT107I	GGYRCC	1 cut(s)	37
BsrDI	GCAATG	2 cut(s)	891, 1066
BsrFI	RCCGGY	2 cut(s)	139, 640
BsrI	ACTGG	2 cut(s)	744, 1036
BssAI	RCCGGY	2 cut(s)	139, 640
BssECI	CCNNGG	3 cut(s)	123, 211, 969
BssMI	GATC	4 cut(s)	245, 425, 996, 1063
BssNI	GRCGYC	1 cut(s)	38
BssSI	CACGAG	2 cut(s)	506, 657
BssT1I	CCWWGG	3 cut(s)	123, 211, 969
Bst2BI	CACGAG	2 cut(s)	506, 657
Bst2UI	CCWGG	3 cut(s)	348, 618, 1043
Bst4CI	ACNGT	2 cut(s)	545, 944
BstACI	GRCGYC	1 cut(s)	38
BstAPI	GCANNNNNTGC	2 cut(s)	650, 677
BstBAI	YACGTR	1 cut(s)	146
BstBI	TTCGAA	1 cut(s)	850
BstC8I	GCNNGC	3 cut(s)	154, 714, 822
BstDEI	CTNAG	4 cut(s)	261, 378, 870, 1074
BstDSI	CCRYGG	2 cut(s)	123, 211
BstF5I	GGATG	2 cut(s)	335, 1032
BstH2I	RGCGCY	2 cut(s)	41, 940
BstHHI	GCGC	2 cut(s)	40, 939
BstKTI	GATC	4 cut(s)	248, 428, 999, 1066
BstMAI	GTCTC	1 cut(s)	335
BstMBI	GATC	4 cut(s)	245, 425, 996, 1063
BstMCI	CGRYCG	1 cut(s)	816
BstMWI	GCNNNNNNNGC	9 cut(s)	314, 317, 650, 659, 662, 668, 677, 821, 959
BstNI	CCWGG	3 cut(s)	348, 618, 1043
BstNSI	RCATGY	2 cut(s)	295, 824
BstSCI	CCNGG	3 cut(s)	346, 616, 1041
BstSFI	CTRYAG	1 cut(s)	1103
BstSLI	GKGCMC	1 cut(s)	638
BstV2I	GAAGAC	1 cut(s)	1010
BstX2I	RGATCY	1 cut(s)	425
BstYI	RGATCY	1 cut(s)	425
BstZI	CGGCCG	1 cut(s)	813
BsuRI	GGCC	1 cut(s)	815
BtgI	CCRYGG	2 cut(s)	123, 211
BtsCI	GGATG	2 cut(s)	335, 1032
BtsIMutI	CAGTG	2 cut(s)	737, 1071
BveI	ACCTGC	1 cut(s)	1096
Cac8I	GCNNGC	3 cut(s)	154, 714, 822
CfoI	GCGC	2 cut(s)	40, 939
Cfr10I	RCCGGY	2 cut(s)	139, 640
Cfr13I	GGNCC	4 cut(s)	161, 179, 344, 353
Csp6I	GTAC	2 cut(s)	143, 845
CviAII	CATG	8 cut(s)	115, 124, 193, 212, 288, 292, 622, 821
CviQI	GTAC	2 cut(s)	143, 845
DdeI	CTNAG	4 cut(s)	261, 378, 870, 1074
DinI	GGCGCC	1 cut(s)	39
DpnI	GATC	4 cut(s)	247, 427, 998, 1065
DpnII	GATC	4 cut(s)	245, 425, 996, 1063
EaeI	YGGCCR	1 cut(s)	813
EagI	CGGCCG	1 cut(s)	813
EciI	GGCGGA	1 cut(s)	686
EclXI	CGGCCG	1 cut(s)	813
Eco130I	CCWWGG	3 cut(s)	123, 211, 969
Eco47I	GGWCC	4 cut(s)	161, 179, 344, 353
Eco47III	AGCGCT	1 cut(s)	938
Eco52I	CGGCCG	1 cut(s)	813
Eco57I	CTGAAG	1 cut(s)	968
EcoO109I	RGGNCCY	1 cut(s)	353
EcoRI	GAATTC	1 cut(s)	1090
EcoRII	CCWGG	3 cut(s)	346, 616, 1041
EcoT14I	CCWWGG	3 cut(s)	123, 211, 969
EcoT22I	ATGCAT	2 cut(s)	293, 373
EgeI	GGCGCC	1 cut(s)	39
EheI	GGCGCC	1 cut(s)	39
ErhI	CCWWGG	3 cut(s)	123, 211, 969
FaeI	CATG	8 cut(s)	118, 127, 196, 215, 291, 295, 625, 824
FaqI	GGGAC	2 cut(s)	165, 215
FatI	CATG	8 cut(s)	114, 123, 192, 211, 287, 291, 621, 820
FauI	CCCGC	1 cut(s)	721
FbaI	TGATCA	1 cut(s)	1063
FblI	GTMKAC	1 cut(s)	51
FokI	GGATG	2 cut(s)	322, 1039
FspBI	CTAG	1 cut(s)	927
GlaI	GCGC	2 cut(s)	39, 938
GsuI	CTGGAG	2 cut(s)	369, 600
HaeII	RGCGCY	2 cut(s)	41, 940
HaeIII	GGCC	1 cut(s)	815
HapII	CCGG	3 cut(s)	47, 140, 641
HhaI	GCGC	2 cut(s)	40, 939
Hin1I	GRCGYC	1 cut(s)	38
Hin1II	CATG	8 cut(s)	118, 127, 196, 215, 291, 295, 625, 824
Hin6I	GCGC	2 cut(s)	38, 937
HinP1I	GCGC	2 cut(s)	38, 937
HindIII	AAGCTT	1 cut(s)	203
HpaII	CCGG	3 cut(s)	47, 140, 641
HphI	GGTGA	1 cut(s)	928
Hpy166II	GTNNAC	2 cut(s)	52, 888
Hpy188I	TCNGA	6 cut(s)	262, 379, 549, 948, 996, 1063
Hpy188III	TCNNGA	6 cut(s)	133, 240, 489, 506, 927, 1000
Hpy8I	GTNNAC	2 cut(s)	52, 888
HpyAV	CCTTC	4 cut(s)	51, 115, 943, 1128
HpyCH4III	ACNGT	2 cut(s)	545, 944
HpyCH4IV	ACGT	1 cut(s)	145
HpyF10VI	GCNNNNNNNGC	9 cut(s)	314, 317, 650, 659, 662, 668, 677, 821, 959
HpyF3I	CTNAG	4 cut(s)	261, 378, 870, 1074
HpySE526I	ACGT	1 cut(s)	145
Hsp92I	GRCGYC	1 cut(s)	38
Hsp92II	CATG	8 cut(s)	118, 127, 196, 215, 291, 295, 625, 824
HspAI	GCGC	2 cut(s)	38, 937
KasI	GGCGCC	1 cut(s)	37
Ksp22I	TGATCA	1 cut(s)	1063
Kzo9I	GATC	4 cut(s)	245, 425, 996, 1063
LmnI	GCTCC	2 cut(s)	615, 734
LweI	GCATC	5 cut(s)	126, 283, 358, 855, 908
MaeI	CTAG	1 cut(s)	927
MaeII	ACGT	1 cut(s)	145
MaeIII	GTNAC	2 cut(s)	518, 1110
MalI	GATC	4 cut(s)	247, 427, 998, 1065
MboI	GATC	4 cut(s)	245, 425, 996, 1063
MboII	GAAGA	7 cut(s)	50, 185, 400, 420, 423, 1015, 1113
MflI	RGATCY	1 cut(s)	425
MhlI	GDGCHC	2 cut(s)	638, 739
MluCI	AATT	7 cut(s)	97, 165, 184, 409, 469, 791, 1090
Mly113I	GGCGCC	1 cut(s)	38
Mph1103I	ATGCAT	2 cut(s)	293, 373
MseI	TTAA	4 cut(s)	84, 201, 297, 630
MslI	CAYNNNNRTG	1 cut(s)	216
MspA1I	CMGCKG	1 cut(s)	827
MspI	CCGG	3 cut(s)	47, 140, 641
MspR9I	CCNGG	3 cut(s)	348, 618, 1043
Mva1269I	GAATGC	2 cut(s)	256, 371
MvaI	CCWGG	3 cut(s)	348, 618, 1043
MwoI	GCNNNNNNNGC	9 cut(s)	314, 317, 650, 659, 662, 668, 677, 821, 959
NarI	GGCGCC	1 cut(s)	38
NcoI	CCATGG	2 cut(s)	123, 211
NdeII	GATC	4 cut(s)	245, 425, 996, 1063
NlaIII	CATG	8 cut(s)	118, 127, 196, 215, 291, 295, 625, 824
NlaIV	GGNNCC	2 cut(s)	39, 181
NmuCI	GTSAC	1 cut(s)	1110
NsiI	ATGCAT	2 cut(s)	293, 373
NspI	RCATGY	2 cut(s)	295, 824
NspV	TTCGAA	1 cut(s)	850
PaeI	GCATGC	1 cut(s)	824
PaqCI	CACCTGC	1 cut(s)	1096
PcsI	WCGNNNNNNNCGW	1 cut(s)	881
PctI	GAATGC	2 cut(s)	256, 371
PluTI	GGCGCC	1 cut(s)	41
Ppu21I	YACGTR	1 cut(s)	146
PpuMI	RGGWCCY	1 cut(s)	353
PshBI	ATTAAT	1 cut(s)	84
Psp5II	RGGWCCY	1 cut(s)	353
Psp6I	CCWGG	3 cut(s)	346, 616, 1041
PspGI	CCWGG	3 cut(s)	346, 616, 1041
PspN4I	GGNNCC	2 cut(s)	39, 181
PspPI	GGNCC	4 cut(s)	161, 179, 344, 353
PspPPI	RGGWCCY	1 cut(s)	353
PstI	CTGCAG	1 cut(s)	1107
PsuI	RGATCY	1 cut(s)	425
PvuII	CAGCTG	1 cut(s)	827
RsaI	GTAC	2 cut(s)	144, 846
RsaNI	GTAC	2 cut(s)	143, 845
RseI	CAYNNNNRTG	1 cut(s)	216
SaqAI	TTAA	4 cut(s)	84, 201, 297, 630
Sau3AI	GATC	4 cut(s)	245, 425, 996, 1063
Sau96I	GGNCC	4 cut(s)	161, 179, 344, 353
ScrFI	CCNGG	3 cut(s)	348, 618, 1043
SduI	GDGCHC	2 cut(s)	638, 739
SfaNI	GCATC	5 cut(s)	126, 283, 358, 855, 908
SfcI	CTRYAG	1 cut(s)	1103
SfoI	GGCGCC	1 cut(s)	39
SfuI	TTCGAA	1 cut(s)	850
SinI	GGWCC	4 cut(s)	161, 179, 344, 353
SmiMI	CAYNNNNRTG	1 cut(s)	216
SphI	GCATGC	1 cut(s)	824
Sse9I	AATT	7 cut(s)	97, 165, 184, 409, 469, 791, 1090
SsiI	CCGC	4 cut(s)	697, 714, 812, 959
SspDI	GGCGCC	1 cut(s)	37
SspMI	CTAG	1 cut(s)	927
StyD4I	CCNGG	3 cut(s)	346, 616, 1041
StyI	CCWWGG	3 cut(s)	123, 211, 969
TaaI	ACNGT	2 cut(s)	545, 944
TaiI	ACGT	1 cut(s)	148
TaqI	TCGA	2 cut(s)	416, 850
TasI	AATT	7 cut(s)	97, 165, 184, 409, 469, 791, 1090
TatI	WGTACW	1 cut(s)	844
TauI	GCSGC	2 cut(s)	815, 962
Tru1I	TTAA	4 cut(s)	84, 201, 297, 630
Tru9I	TTAA	4 cut(s)	84, 201, 297, 630
TscAI	CASTG	2 cut(s)	744, 1078
TseFI	GTSAC	1 cut(s)	1110
Tsp45I	GTSAC	1 cut(s)	1110
TspDTI	ATGAA	4 cut(s)	638, 826, 1043, 1113
TspGWI	ACGGA	1 cut(s)	554
TspRI	CASTG	2 cut(s)	744, 1078
VpaK11BI	GGWCC	4 cut(s)	161, 179, 344, 353
VspI	ATTAAT	1 cut(s)	84
XapI	RAATTY	2 cut(s)	791, 1090
XbaI	TCTAGA	1 cut(s)	926
XceI	RCATGY	2 cut(s)	295, 824
XcmI	CCANNNNNNNNNTGG	3 cut(s)	121, 190, 218
XmiI	GTMKAC	1 cut(s)	51
XspI	CTAG	1 cut(s)	927
Zsp2I	ATGCAT	2 cut(s)	293, 373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.