Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0007057

Physical Location & Seq

Genomic Coordinates Forward (+)

38656951 .. 38657610

Gene Structure 660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1255700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGTTTAATCCATTAGCTACAAAGGCAGCTACAATTTGTCTCTCAGTCTTTGGTCCTGGAGGGCCATTCAGTTTCGATGCATGGAAGAAACAGCAAAGGAAATCTAATTCCTCGAAAAAAGATTCTACTTCAAAGGGAGGAAATTCTAATCACGAGGCATTGGGTAATGAGTGGCTGCAATCCGGAAGATGTCCGATAGCAAAGTCATACCGTGCTGTTAGCAGTGTCATTCCACTAGTCGCAAAGGTTTTGCAGCCCCCTCCAGGAATGAAACTCAAGTGCCCGCCAGCAATAGTTGCTGCTCGAGCAGCCCTGTCGCAAACTGCATTTGCAAAGAACCTCCGCCCACAACCCCTTCCGGCAAAAGTACTTGTGATCGGATCAATGGGCATGGCAGCCAATGTTCCTTTAGGGATATGTAGAGAGCACACCAAAAAATTCTCACTATCTTGGTTCGCTGCTGTGCATGCAGCTGTGCCATTCATAGCCATACTTCGGAAATCTGTGCTCATGCCTAAATCAGCCATGGCATTTACCATTGCCACATCAGTACTAGGACAAGTCATTGGCTCCAGAGCAGAGCGGTACCGCCTCAAAGCTGCGGCTTCCAAAACATTGCCTCTGACGATTGAAACCTCCGTTGGTGGTGTGATAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

220

Amino Acids

23.2

Weight (kDa)

10.49

Isoelectric Point (pI)

41.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25030 AT4G25030
fragaria_vesca	FvH4_7g19880 FvH4_7g19880
malus_domestica	MD01G1110900.v1.1 MD05G1255700.v1.1 MD07G1177000.v1.1
prunus_persica	Prupe.2G215800_v2.0.a1
pyrus_communis	pycom01g13820 pycom07g17110
rosa_chinensis	RchiOBHm_Chr1g0363861
rosa_laevigata	RLG00000027540
rosa_multiflora	Rmu_co8207472.1_g000001 Rmu_sc0002483.1_g000002 Rmu_sc0041994.1_g000001
rosa_roxburghii	Rroxscaffold_4G00292910
rosa_rugosa	Rorug01G0310000 Rorug01G0310100 Rorug01G0310200 Rorug01G0310300
rosa_samantha	Rh1AG318400 Rh1BG281600 Rh1CG298000 Rh1DG312900
rosa_wichuraiana	Rw1G028260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	585
AccB1I	GGYRCC	1 cut(s)	585
AccBSI	CCGCTC	1 cut(s)	583
AccIII	TCCGGA	1 cut(s)	182
AciI	CCGC	5 cut(s)	284, 343, 583, 589, 602
AclWI	GGATC	1 cut(s)	388
AcsI	RAATTY	2 cut(s)	142, 437
AfaI	GTAC	3 cut(s)	369, 552, 587
AfiI	CCNNNNNNNGG	2 cut(s)	263, 495
AgsI	TTSAA	2 cut(s)	132, 632
AhlI	ACTAGT	1 cut(s)	235
AjnI	CCWGG	2 cut(s)	55, 262
AjuI	GAANNNNNNNTTGG	2 cut(s)	624, 656
AluBI	AGCT	4 cut(s)	17, 29, 473, 599
AluI	AGCT	4 cut(s)	17, 29, 473, 599
Alw21I	GWGCWC	2 cut(s)	429, 510
Alw26I	GTCTC	1 cut(s)	44
AlwI	GGATC	1 cut(s)	388
Ama87I	CYCGRG	1 cut(s)	303
Aor13HI	TCCGGA	1 cut(s)	182
AoxI	GGCC	1 cut(s)	62
ApeKI	GCWGC	9 cut(s)	26, 175, 253, 299, 308, 395, 458, 470, 599
ApoI	RAATTY	2 cut(s)	142, 437
Asp718I	GGTACC	1 cut(s)	585
AspS9I	GGNCC	2 cut(s)	53, 62
AvaI	CYCGRG	1 cut(s)	303
AvaII	GGWCC	1 cut(s)	53
BaeGI	GKGCMC	1 cut(s)	284
BanI	GGYRCC	1 cut(s)	585
BauI	CACGAG	1 cut(s)	152
Bbv12I	GWGCWC	2 cut(s)	429, 510
BbvI	GCAGC	9 cut(s)	38, 162, 265, 286, 320, 407, 445, 482, 586
BcgI	CGANNNNNNTGC	2 cut(s)	297, 331
BciT130I	CCWGG	2 cut(s)	57, 264
BcoDI	GTCTC	1 cut(s)	44
BcuI	ACTAGT	1 cut(s)	235
BfaI	CTAG	2 cut(s)	236, 554
BmcAI	AGTACT	2 cut(s)	369, 552
Bme1390I	CCNGG	2 cut(s)	57, 264
Bme18I	GGWCC	1 cut(s)	53
BmeT110I	CYCGRG	1 cut(s)	303
BmgT120I	GGNCC	2 cut(s)	53, 62
BmiI	GGNNCC	2 cut(s)	571, 587
BmrFI	CCNGG	2 cut(s)	57, 264
BmsI	GCATC	1 cut(s)	67
BpmI	CTGGAG	3 cut(s)	78, 246, 556
BpuEI	CTTGAG	1 cut(s)	260
BsaJI	CCNNGG	1 cut(s)	525
BsaWI	WCCGGW	1 cut(s)	182
Bsc4I	CCNNNNNNNGG	2 cut(s)	263, 495
Bse3DI	GCAATG	2 cut(s)	537, 614
BseAI	TCCGGA	1 cut(s)	182
BseBI	CCWGG	2 cut(s)	57, 264
BseDI	CCNNGG	1 cut(s)	525
BseLI	CCNNNNNNNGG	2 cut(s)	263, 495
BseMI	GCAATG	2 cut(s)	537, 614
BseMII	CTCAG	1 cut(s)	57
BseSI	GKGCMC	1 cut(s)	284
BseXI	GCAGC	9 cut(s)	38, 162, 265, 286, 320, 407, 445, 482, 586
BshFI	GGCC	1 cut(s)	64
BshNI	GGYRCC	1 cut(s)	585
BsiHKAI	GWGCWC	2 cut(s)	429, 510
BsiHKCI	CYCGRG	1 cut(s)	303
BsiSI	CCGG	2 cut(s)	183, 359
BslI	CCNNNNNNNGG	2 cut(s)	263, 495
BsmAI	GTCTC	1 cut(s)	44
BsnI	GGCC	1 cut(s)	64
BsoBI	CYCGRG	1 cut(s)	303
Bsp1286I	GDGCHC	3 cut(s)	284, 429, 510
Bsp13I	TCCGGA	1 cut(s)	182
Bsp143I	GATC	2 cut(s)	375, 380
Bsp19I	CCATGG	1 cut(s)	525
BspACI	CCGC	5 cut(s)	284, 343, 583, 589, 602
BspANI	GGCC	1 cut(s)	64
BspCNI	CTCAG	1 cut(s)	56
BspEI	TCCGGA	1 cut(s)	182
BspLI	GGNNCC	2 cut(s)	571, 587
BspPI	GGATC	1 cut(s)	388
BspT107I	GGYRCC	1 cut(s)	585
BsrBI	CCGCTC	1 cut(s)	583
BsrDI	GCAATG	2 cut(s)	537, 614
BssECI	CCNNGG	1 cut(s)	525
BssMI	GATC	2 cut(s)	375, 380
BssSI	CACGAG	1 cut(s)	152
BssT1I	CCWWGG	1 cut(s)	525
Bst2BI	CACGAG	1 cut(s)	152
Bst2UI	CCWGG	2 cut(s)	57, 264
Bst4CI	ACNGT	1 cut(s)	212
BstAPI	GCANNNNNTGC	1 cut(s)	296
BstC8I	GCNNGC	3 cut(s)	284, 288, 468
BstDEI	CTNAG	1 cut(s)	43
BstDSI	CCRYGG	1 cut(s)	525
BstKTI	GATC	2 cut(s)	378, 383
BstMAI	GTCTC	1 cut(s)	44
BstMBI	GATC	2 cut(s)	375, 380
BstMWI	GCNNNNNNNGC	5 cut(s)	23, 296, 305, 308, 467
BstNI	CCWGG	2 cut(s)	57, 264
BstNSI	RCATGY	1 cut(s)	470
BstSCI	CCNGG	2 cut(s)	55, 262
BstSLI	GKGCMC	1 cut(s)	284
BstV1I	GCAGC	9 cut(s)	38, 162, 265, 286, 320, 407, 445, 482, 586
BsuRI	GGCC	1 cut(s)	64
BtgI	CCRYGG	1 cut(s)	525
BtsI	GCAGTG	1 cut(s)	229
BtsIMutI	CAGTG	1 cut(s)	229
Cac8I	GCNNGC	3 cut(s)	284, 288, 468
Cfr13I	GGNCC	2 cut(s)	53, 62
Csp6I	GTAC	3 cut(s)	368, 551, 586
CviAII	CATG	5 cut(s)	81, 391, 467, 511, 526
CviQI	GTAC	3 cut(s)	368, 551, 586
DdeI	CTNAG	1 cut(s)	43
DpnI	GATC	2 cut(s)	377, 382
DpnII	GATC	2 cut(s)	375, 380
EciI	GGCGGA	1 cut(s)	332
Eco130I	CCWWGG	1 cut(s)	525
Eco47I	GGWCC	1 cut(s)	53
Eco88I	CYCGRG	1 cut(s)	303
EcoRII	CCWGG	2 cut(s)	55, 262
EcoT14I	CCWWGG	1 cut(s)	525
EcoT22I	ATGCAT	1 cut(s)	82
ErhI	CCWWGG	1 cut(s)	525
FaeI	CATG	5 cut(s)	84, 394, 470, 514, 529
FaiI	YATR	9 cut(s)	82, 208, 392, 418, 468, 485, 491, 512, 527
FatI	CATG	5 cut(s)	80, 390, 466, 510, 525
FauI	CCCGC	1 cut(s)	291
FspBI	CTAG	2 cut(s)	236, 554
GsuI	CTGGAG	3 cut(s)	78, 246, 556
HaeIII	GGCC	1 cut(s)	64
HapII	CCGG	2 cut(s)	183, 359
Hin1II	CATG	5 cut(s)	84, 394, 470, 514, 529
HinfI	GANTC	1 cut(s)	122
HpaII	CCGG	2 cut(s)	183, 359
Hpy188I	TCNGA	4 cut(s)	195, 380, 498, 624
Hpy188III	TCNNGA	3 cut(s)	152, 183, 573
HpyAV	CCTTC	1 cut(s)	365
HpyCH4III	ACNGT	1 cut(s)	212
HpyCH4V	TGCA	7 cut(s)	80, 178, 253, 326, 332, 466, 470
HpyF10VI	GCNNNNNNNGC	5 cut(s)	23, 296, 305, 308, 467
HpyF3I	CTNAG	1 cut(s)	43
Hsp92II	CATG	5 cut(s)	84, 394, 470, 514, 529
Kpn2I	TCCGGA	1 cut(s)	182
KpnI	GGTACC	1 cut(s)	589
Kzo9I	GATC	2 cut(s)	375, 380
LmnI	GCTCC	1 cut(s)	575
LpnPI	CCDG	9 cut(s)	42, 69, 196, 249, 276, 300, 326, 372, 586
Lsp1109I	GCAGC	9 cut(s)	38, 162, 265, 286, 320, 407, 445, 482, 586
LweI	GCATC	1 cut(s)	67
MaeI	CTAG	2 cut(s)	236, 554
MalI	GATC	2 cut(s)	377, 382
MbiI	CCGCTC	1 cut(s)	583
MboI	GATC	2 cut(s)	375, 380
MboII	GAAGA	2 cut(s)	97, 198
MhlI	GDGCHC	3 cut(s)	284, 429, 510
MluCI	AATT	4 cut(s)	33, 106, 142, 437
MnlI	CCTC	9 cut(s)	53, 121, 131, 148, 270, 350, 602, 630, 646
Mph1103I	ATGCAT	1 cut(s)	82
MroI	TCCGGA	1 cut(s)	182
MseI	TTAA	1 cut(s)	6
MspA1I	CMGCKG	1 cut(s)	473
MspI	CCGG	2 cut(s)	183, 359
MspR9I	CCNGG	2 cut(s)	57, 264
MvaI	CCWGG	2 cut(s)	57, 264
MwoI	GCNNNNNNNGC	5 cut(s)	23, 296, 305, 308, 467
NcoI	CCATGG	1 cut(s)	525
NdeII	GATC	2 cut(s)	375, 380
NlaIII	CATG	5 cut(s)	84, 394, 470, 514, 529
NlaIV	GGNNCC	2 cut(s)	571, 587
NsiI	ATGCAT	1 cut(s)	82
NspI	RCATGY	1 cut(s)	470
PaeI	GCATGC	1 cut(s)	470
PaeR7I	CTCGAG	1 cut(s)	303
PfeI	GAWTC	1 cut(s)	122
PfoI	TCCNGGA	2 cut(s)	55, 262
Psp6I	CCWGG	2 cut(s)	55, 262
PspGI	CCWGG	2 cut(s)	55, 262
PspN4I	GGNNCC	2 cut(s)	571, 587
PspPI	GGNCC	2 cut(s)	53, 62
PspXI	VCTCGAGB	1 cut(s)	303
PvuII	CAGCTG	1 cut(s)	473
RsaI	GTAC	3 cut(s)	369, 552, 587
RsaNI	GTAC	3 cut(s)	368, 551, 586
SaqAI	TTAA	1 cut(s)	6
Sau3AI	GATC	2 cut(s)	375, 380
Sau96I	GGNCC	2 cut(s)	53, 62
ScaI	AGTACT	2 cut(s)	369, 552
ScrFI	CCNGG	2 cut(s)	57, 264
SduI	GDGCHC	3 cut(s)	284, 429, 510
SetI	ASST	7 cut(s)	19, 31, 249, 342, 475, 601, 638
SfaNI	GCATC	1 cut(s)	67
Sfr274I	CTCGAG	1 cut(s)	303
SinI	GGWCC	1 cut(s)	53
SlaI	CTCGAG	1 cut(s)	303
SmlI	CTYRAG	2 cut(s)	275, 303
SmoI	CTYRAG	2 cut(s)	275, 303
SpeI	ACTAGT	1 cut(s)	235
SphI	GCATGC	1 cut(s)	470
Sse9I	AATT	4 cut(s)	33, 106, 142, 437
SsiI	CCGC	5 cut(s)	284, 343, 583, 589, 602
SspMI	CTAG	2 cut(s)	236, 554
StyD4I	CCNGG	2 cut(s)	55, 262
StyI	CCWWGG	1 cut(s)	525
TaaI	ACNGT	1 cut(s)	212
TaqI	TCGA	3 cut(s)	75, 113, 304
TasI	AATT	4 cut(s)	33, 106, 142, 437
TatI	WGTACW	2 cut(s)	367, 550
TauI	GCSGC	1 cut(s)	605
TfiI	GAWTC	1 cut(s)	122
Tru1I	TTAA	1 cut(s)	6
Tru9I	TTAA	1 cut(s)	6
TscAI	CASTG	1 cut(s)	229
TseI	GCWGC	9 cut(s)	26, 175, 253, 299, 308, 395, 458, 470, 599
TspDTI	ATGAA	2 cut(s)	284, 472
TspGWI	ACGGA	1 cut(s)	628
TspRI	CASTG	1 cut(s)	229
VpaK11BI	GGWCC	1 cut(s)	53
XapI	RAATTY	2 cut(s)	142, 437
XceI	RCATGY	1 cut(s)	470
XhoI	CTCGAG	1 cut(s)	303
XspI	CTAG	2 cut(s)	236, 554
ZrmI	AGTACT	2 cut(s)	369, 552
Zsp2I	ATGCAT	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.