Prupe.2G215800_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0007057
Physical Location & Seq
Reverse (-)
24650445 .. 24653132
2688 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G215800.1

Sequence Viewer

Length: 1047 bp
ATGGATTCCTTTTTCAAAGTTGCAAATGAAGATTGTGTGCCTTCTGACCTAGACATTCTCAGATGCCCGTTTTTGAGAAACATCAATGAGCCCACCAATTTTTCCTTTGCCTCATCCTTGGCCTTCCCAGTGCCTGGACGCGGCGGCAAAGGTCCAATTTTTGAAGATGGTCCCAATTTTGACATGGCATTTAGGCTTTTCCATGGGAGTGATGGGGTAGTCCCCCTTTCTGGAAGATCATTTGTGCATTCTGACATGGTTGAGCCTCAACCAGCCCCATCCATGTTTAATCCATTAGCTGCAAAGGCAGCCACTATCAGTCTCTCATCCTTTGGAGGGCCATTCAGCTTTGATGCATTCTCTGAGAAGTGGAAGAATCAGAAACGAAAATCCAATTCCTCCAAAAAAGATTATTCTTCAAAGGGAGGAAATTCTAATCACGAGGCTTTGAGTAATGAGTGGCTGCAATCTGGAAGCTGTCCGATCGCGAAGTCATACCGTGCTGTTAGTGGTGTAATTCCGCTTGTTGCAAAGGCTTTTCAGCCCCCTCCAGGGATGAAAATTAAGTGCCCACCAGCTATAGTTGCAGCCCGAGCAGCTCTGGCACGAACTGCATTTGCAAAGAACCTCCGCCCACAACCCCTTCCTGAAAAAGTACTTGTGATTGGAGCATTGGGCATGGCAGCCAATGTTCCTTTAGGGGTATGGAGGGAGCACACCAAGAAATTTTCACCATCTTGGTTTGCTGCTGTGCATGCAGCTGTTCCATTCATAGCCATACTTCGGAAGTCTGTGCTGATGCCTAAATCAGCCATGGCTTTTACCATTGCAGCATCAGTGCTAGGACAGGTCATTGGCTCGAGAGCAGAGCGATACCGGCTGAAGGCAGTGGCTGCTAAAAAATTGTCTGTGACTGAAACCTCTGTTGGTGGGACAAGCGAGTTACAGGTGCTTAAAGCGAAAACTGGTCACTGCAATGACATTGAGGAGTGGAATTCAGTTGCTCTTCAGGTTACGCCTTCTTCCTCAACCGATGTGTTCTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

349

Amino Acids

37.33

Weight (kDa)

9.61

Isoelectric Point (pI)

45.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 134
AccII CGCG 2 cut(s) 141, 488
AciI CCGC 4 cut(s) 141, 144, 521, 631
AcsI RAATTY 3 cut(s) 430, 725, 994
AcuI CTGAAG 2 cut(s) 902, 992
AfaI GTAC 1 cut(s) 657
AfiI CCNNNNNNNGG 8 cut(s) 134, 140, 230, 336, 551, 552, 783, 883
AgsI TTSAA 3 cut(s) 16, 164, 420
AjnI CCWGG 2 cut(s) 133, 550
AjuI GAANNNNNNNTTGG 2 cut(s) 909, 941
AluBI AGCT 6 cut(s) 299, 348, 477, 578, 599, 761
AluI AGCT 6 cut(s) 299, 348, 477, 578, 599, 761
Alw21I GWGCWC 1 cut(s) 717
Alw26I GTCTC 1 cut(s) 326
AlwNI CAGNNNCTG 2 cut(s) 134, 893
Ama87I CYCGRG 2 cut(s) 591, 859
AoxI GGCC 2 cut(s) 120, 338
ApoI RAATTY 3 cut(s) 430, 725, 994
AspS9I GGNCC 3 cut(s) 152, 170, 338
AsuHPI GGTGA 1 cut(s) 723
AvaI CYCGRG 2 cut(s) 591, 859
AvaII GGWCC 2 cut(s) 152, 170
BaeGI GKGCMC 1 cut(s) 572
BanII GRGCYC 1 cut(s) 93
BauI CACGAG 1 cut(s) 440
Bbv12I GWGCWC 1 cut(s) 717
BccI CCATC 4 cut(s) 161, 206, 286, 742
BciT130I CCWGG 2 cut(s) 135, 552
BcoDI GTCTC 1 cut(s) 326
BfaI CTAG 2 cut(s) 50, 842
BfmI CTRYAG 1 cut(s) 579
BmcAI AGTACT 1 cut(s) 657
Bme1390I CCNGG 2 cut(s) 135, 552
Bme18I GGWCC 2 cut(s) 152, 170
BmeT110I CYCGRG 2 cut(s) 591, 859
BmgT120I GGNCC 3 cut(s) 152, 170, 338
BmiI GGNNCC 1 cut(s) 172
BmrFI CCNGG 2 cut(s) 135, 552
BmrI ACTGGG 1 cut(s) 122
BmsI GCATC 4 cut(s) 53, 343, 789, 842
BmuI ACTGGG 1 cut(s) 122
BpmI CTGGAG 1 cut(s) 534
BsaJI CCNNGG 4 cut(s) 117, 202, 551, 813
Bsc4I CCNNNNNNNGG 8 cut(s) 134, 140, 230, 336, 551, 552, 783, 883
Bse118I RCCGGY 1 cut(s) 876
Bse1I ACTGG 2 cut(s) 128, 970
Bse3DI GCAATG 2 cut(s) 825, 982
BseBI CCWGG 2 cut(s) 135, 552
BseDI CCNNGG 4 cut(s) 117, 202, 551, 813
BseGI GGATG 4 cut(s) 113, 278, 326, 561
BseLI CCNNNNNNNGG 8 cut(s) 134, 140, 230, 336, 551, 552, 783, 883
BseMI GCAATG 2 cut(s) 825, 982
BseMII CTCAG 2 cut(s) 73, 354
BseNI ACTGG 2 cut(s) 128, 970
BseRI GAGGAG 1 cut(s) 1001
BseSI GKGCMC 1 cut(s) 572
Bsh1236I CGCG 2 cut(s) 141, 488
Bsh1285I CGRYCG 1 cut(s) 486
BshFI GGCC 2 cut(s) 122, 340
BsiEI CGRYCG 1 cut(s) 486
BsiHKAI GWGCWC 1 cut(s) 717
BsiHKCI CYCGRG 2 cut(s) 591, 859
BsiSI CCGG 1 cut(s) 877
BslFI GGGAC 3 cut(s) 156, 206, 946
BslI CCNNNNNNNGG 8 cut(s) 134, 140, 230, 336, 551, 552, 783, 883
BsmAI GTCTC 1 cut(s) 326
BsmFI GGGAC 3 cut(s) 156, 206, 946
BsmI GAATGC 2 cut(s) 247, 356
BsnI GGCC 2 cut(s) 122, 340
BsoBI CYCGRG 2 cut(s) 591, 859
Bsp1286I GDGCHC 3 cut(s) 93, 572, 717
Bsp143I GATC 2 cut(s) 236, 483
Bsp19I CCATGG 2 cut(s) 202, 813
Bsp68I TCGCGA 1 cut(s) 488
BspACI CCGC 4 cut(s) 141, 144, 521, 631
BspANI GGCC 2 cut(s) 122, 340
BspCNI CTCAG 2 cut(s) 72, 355
BspFNI CGCG 2 cut(s) 141, 488
BspLI GGNNCC 1 cut(s) 172
BspQI GCTCTTC 1 cut(s) 1011
BsrDI GCAATG 2 cut(s) 825, 982
BsrFI RCCGGY 1 cut(s) 876
BsrI ACTGG 2 cut(s) 128, 970
BssAI RCCGGY 1 cut(s) 876
BssECI CCNNGG 4 cut(s) 117, 202, 551, 813
BssMI GATC 2 cut(s) 236, 483
BssSI CACGAG 1 cut(s) 440
BssT1I CCWWGG 3 cut(s) 117, 202, 813
Bst2BI CACGAG 1 cut(s) 440
Bst2UI CCWGG 2 cut(s) 135, 552
Bst4CI ACNGT 1 cut(s) 500
Bst6I CTCTTC 1 cut(s) 1011
BstAPI GCANNNNNTGC 2 cut(s) 611, 893
BstC8I GCNNGC 1 cut(s) 756
BstDEI CTNAG 2 cut(s) 59, 363
BstDSI CCRYGG 2 cut(s) 202, 813
BstF5I GGATG 4 cut(s) 113, 278, 326, 561
BstFNI CGCG 2 cut(s) 141, 488
BstKTI GATC 2 cut(s) 239, 486
BstMAI GTCTC 1 cut(s) 326
BstMBI GATC 2 cut(s) 236, 483
BstMCI CGRYCG 1 cut(s) 486
BstNI CCWGG 2 cut(s) 135, 552
BstNSI RCATGY 1 cut(s) 758
BstSCI CCNGG 2 cut(s) 133, 550
BstSFI CTRYAG 1 cut(s) 579
BstSLI GKGCMC 1 cut(s) 572
BstUI CGCG 2 cut(s) 141, 488
BsuRI GGCC 2 cut(s) 122, 340
BtgI CCRYGG 2 cut(s) 202, 813
BtsCI GGATG 4 cut(s) 113, 278, 326, 561
BtsI GCAGTG 2 cut(s) 894, 970
BtsIMutI CAGTG 4 cut(s) 135, 843, 894, 970
BtuMI TCGCGA 1 cut(s) 488
Cac8I GCNNGC 1 cut(s) 756
CaiI CAGNNNCTG 2 cut(s) 134, 893
Cfr10I RCCGGY 1 cut(s) 876
Cfr13I GGNCC 3 cut(s) 152, 170, 338
CseI GACGC 1 cut(s) 147
Csp6I GTAC 1 cut(s) 656
CviAII CATG 7 cut(s) 184, 203, 256, 283, 679, 755, 814
CviQI GTAC 1 cut(s) 656
DdeI CTNAG 2 cut(s) 59, 363
DpnI GATC 2 cut(s) 238, 485
DpnII GATC 2 cut(s) 236, 483
Eam1104I CTCTTC 1 cut(s) 1011
EarI CTCTTC 1 cut(s) 1011
EciI GGCGGA 1 cut(s) 620
Eco130I CCWWGG 3 cut(s) 117, 202, 813
Eco24I GRGCYC 1 cut(s) 93
Eco47I GGWCC 2 cut(s) 152, 170
Eco57I CTGAAG 2 cut(s) 902, 992
Eco88I CYCGRG 2 cut(s) 591, 859
EcoRI GAATTC 1 cut(s) 994
EcoRII CCWGG 2 cut(s) 133, 550
EcoT14I CCWWGG 3 cut(s) 117, 202, 813
EcoT22I ATGCAT 1 cut(s) 358
EcoT38I GRGCYC 1 cut(s) 93
ErhI CCWWGG 3 cut(s) 117, 202, 813
FaeI CATG 7 cut(s) 187, 206, 259, 286, 682, 758, 817
FaqI GGGAC 3 cut(s) 156, 206, 946
FatI CATG 7 cut(s) 183, 202, 255, 282, 678, 754, 813
FokI GGATG 4 cut(s) 100, 265, 313, 568
FriOI GRGCYC 1 cut(s) 93
FspBI CTAG 2 cut(s) 50, 842
GsuI CTGGAG 1 cut(s) 534
HaeIII GGCC 2 cut(s) 122, 340
HapII CCGG 1 cut(s) 877
HgaI GACGC 1 cut(s) 147
Hin1II CATG 7 cut(s) 187, 206, 259, 286, 682, 758, 817
HinfI GANTC 2 cut(s) 5, 376
HpaII CCGG 1 cut(s) 877
HphI GGTGA 1 cut(s) 723
Hpy188I TCNGA 7 cut(s) 46, 62, 253, 364, 381, 483, 786
Hpy188III TCNNGA 6 cut(s) 231, 440, 471, 487, 647, 861
HpyAV CCTTC 5 cut(s) 51, 133, 653, 877, 1029
HpyCH4III ACNGT 1 cut(s) 500
HpyF3I CTNAG 2 cut(s) 59, 363
Hsp92II CATG 7 cut(s) 187, 206, 259, 286, 682, 758, 817
Kzo9I GATC 2 cut(s) 236, 483
LguI GCTCTTC 1 cut(s) 1011
LmnI GCTCC 2 cut(s) 668, 712
LweI GCATC 4 cut(s) 53, 343, 789, 842
MaeI CTAG 2 cut(s) 50, 842
MaeIII GTNAC 4 cut(s) 910, 942, 968, 1012
MalI GATC 2 cut(s) 238, 485
MboI GATC 2 cut(s) 236, 483
MboII GAAGA 7 cut(s) 41, 176, 246, 385, 408, 998, 1014
MhlI GDGCHC 3 cut(s) 93, 572, 717
Mph1103I ATGCAT 1 cut(s) 358
MseI TTAA 3 cut(s) 288, 564, 954
MslI CAYNNNNRTG 2 cut(s) 207, 975
MspA1I CMGCKG 1 cut(s) 761
MspI CCGG 1 cut(s) 877
MspR9I CCNGG 2 cut(s) 135, 552
Mva1269I GAATGC 2 cut(s) 247, 356
MvaI CCWGG 2 cut(s) 135, 552
MvnI CGCG 2 cut(s) 141, 488
NcoI CCATGG 2 cut(s) 202, 813
NdeII GATC 2 cut(s) 236, 483
NlaIII CATG 7 cut(s) 187, 206, 259, 286, 682, 758, 817
NlaIV GGNNCC 1 cut(s) 172
NmuCI GTSAC 2 cut(s) 910, 968
NruI TCGCGA 1 cut(s) 488
NsiI ATGCAT 1 cut(s) 358
NspI RCATGY 1 cut(s) 758
PaeI GCATGC 1 cut(s) 758
PaeR7I CTCGAG 1 cut(s) 859
PciSI GCTCTTC 1 cut(s) 1011
PctI GAATGC 2 cut(s) 247, 356
PfeI GAWTC 2 cut(s) 5, 376
PflMI CCANNNNNTGG 1 cut(s) 134
Ple19I CGATCG 1 cut(s) 486
Psp6I CCWGG 2 cut(s) 133, 550
PspGI CCWGG 2 cut(s) 133, 550
PspN4I GGNNCC 1 cut(s) 172
PspPI GGNCC 3 cut(s) 152, 170, 338
PstNI CAGNNNCTG 2 cut(s) 134, 893
PvuI CGATCG 1 cut(s) 486
PvuII CAGCTG 1 cut(s) 761
RruI TCGCGA 1 cut(s) 488
RsaI GTAC 1 cut(s) 657
RsaNI GTAC 1 cut(s) 656
RseI CAYNNNNRTG 2 cut(s) 207, 975
SapI GCTCTTC 1 cut(s) 1011
SaqAI TTAA 3 cut(s) 288, 564, 954
Sau3AI GATC 2 cut(s) 236, 483
Sau96I GGNCC 3 cut(s) 152, 170, 338
ScaI AGTACT 1 cut(s) 657
ScrFI CCNGG 2 cut(s) 135, 552
SduI GDGCHC 3 cut(s) 93, 572, 717
SfaNI GCATC 4 cut(s) 53, 343, 789, 842
SfcI CTRYAG 1 cut(s) 579
Sfr274I CTCGAG 1 cut(s) 859
SinI GGWCC 2 cut(s) 152, 170
SlaI CTCGAG 1 cut(s) 859
SmiMI CAYNNNNRTG 2 cut(s) 207, 975
SmlI CTYRAG 1 cut(s) 859
SmoI CTYRAG 1 cut(s) 859
SphI GCATGC 1 cut(s) 758
SsiI CCGC 4 cut(s) 141, 144, 521, 631
SspMI CTAG 2 cut(s) 50, 842
StyD4I CCNGG 2 cut(s) 133, 550
StyI CCWWGG 3 cut(s) 117, 202, 813
TaaI ACNGT 1 cut(s) 500
TaqI TCGA 1 cut(s) 860
TatI WGTACW 1 cut(s) 655
TauI GCSGC 2 cut(s) 144, 147
TfiI GAWTC 2 cut(s) 5, 376
Tru1I TTAA 3 cut(s) 288, 564, 954
Tru9I TTAA 3 cut(s) 288, 564, 954
TscAI CASTG 4 cut(s) 135, 843, 894, 977
TseFI GTSAC 2 cut(s) 910, 968
Tsp45I GTSAC 2 cut(s) 910, 968
TspDTI ATGAA 3 cut(s) 42, 572, 760
TspRI CASTG 4 cut(s) 135, 843, 894, 977
Van91I CCANNNNNTGG 1 cut(s) 134
VpaK11BI GGWCC 2 cut(s) 152, 170
XapI RAATTY 3 cut(s) 430, 725, 994
XceI RCATGY 1 cut(s) 758
XcmI CCANNNNNNNNNTGG 2 cut(s) 181, 209
XhoI CTCGAG 1 cut(s) 859
XspI CTAG 2 cut(s) 50, 842
ZrmI AGTACT 1 cut(s) 657
Zsp2I ATGCAT 1 cut(s) 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.