pycom07g17110

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0007057
Physical Location & Seq
Reverse (-)
19663519 .. 19664890
1372 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g17110.2

Sequence Viewer

Length: 1134 bp
ATGGATTCCTTTTTCAATTTCAAAGCTCCAAGTGACGATTGTGTGCCGTCTGAGCTAGACATTCTCAAATGCCCATTTTTGAGAAACATCAATGAGCCCACCAACTTTTCCTTCGCCTCATCCTTGGCGTTCCCAGTGCCTGGACGTGGAGCCAAAGGTCCAATTTTTGAAGATGGTCCCAATTTTGACATGGCATTTCGGCTTTTCCATGGGAGTGACGGAGTTGTCCCGCTTTCTGGAAAATCATATGTGCATTCTGACATAGTTGAGCCTCGACCAGCCCCACCCATGTTCAATCCATTAGCTGCAAAGGCAGCTACGATCGATCTCTCATCCTTTGGTGCTGGAGGGCCATTCAGTTTCGATGCATTCCATAAGAAATGGAAGAACCAGCAAAAGAAATCTAATTCCTCGAAAAAAGATTCTACTTCAAAGGGAGGAAATTCTAATCACGAGGCAGTGAGCAATGAGTGGCTGCAATCCGGAAACTGTCCAATCGCAAAGTCATACCGTGCTGTTAGTGGTGTCATTCCACTAGTCGCAAAGGCTTTTCAGCCCCCTCCAGGCATGAAAATCAAGTGCCCGCCAGCAATAGTTGCAGCCCGAGCAGCCCTGTCGCGAACTGCATTTGCAAAGAACCTCCGCCCGCAACCCCTTCCTGCAAAAGTACTTGTGATTGGAGCGATGGGCATGGCAGCCAATGTTCCTTTAGGGATATGGAGAGAGCACACCAAGAAATTCTCACTATCTTGGTTCGCGGCTGTGCATGCAGCTGTCCCATTCATAGCCTTACTTCGGAAGTCTGTGCTGATGCCTAAATCAGCCATGGCGTTCACCATTGCCGCATCAGTACTTGGACAGGTGATTGGCTCCAGAGCAGAACGGTACCGTCTGAAGGCGGTGGCTTCTAAAAGTTCACCTCTGACTGAAACCTCCGCTGGTGTTGTGACAGCGCAGACAAGCGAGCTACAGGTGCTCCAAGCGAAGACTGAAACCTCTGCTGGTGGTGCGACAACGCAGACAAGCGAGCTACAGGTGCTCCAAGCGAAAACCGGCCACTGCAATGCGATTGAGGAGTGGAATTCAGTCTCTCTTCAGGTGGCGCGTCCTTCGTCATCCACAGATGTGTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

378

Amino Acids

40.18

Weight (kDa)

9.69

Isoelectric Point (pI)

43.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 224
Acc65I GGTACC 1 cut(s) 885
AccB1I GGYRCC 1 cut(s) 885
AccB7I CCANNNNNTGG 1 cut(s) 140
AccII CGCG 3 cut(s) 619, 758, 1105
AccIII TCCGGA 1 cut(s) 482
AciI CCGC 8 cut(s) 230, 584, 643, 647, 758, 843, 899, 936
AcoI YGGCCR 1 cut(s) 1054
AcsI RAATTY 3 cut(s) 442, 737, 1081
AcuI CTGAAG 2 cut(s) 914, 1079
AfaI GTAC 3 cut(s) 669, 852, 887
AfiI CCNNNNNNNGG 6 cut(s) 140, 146, 236, 563, 795, 895
AgsI TTSAA 5 cut(s) 16, 22, 170, 295, 432
AhlI ACTAGT 1 cut(s) 535
AjiI CACGTC 1 cut(s) 146
AjnI CCWGG 2 cut(s) 139, 562
AjuI GAANNNNNNNTTGG 2 cut(s) 95, 127
AleI CACNNNNGTG 1 cut(s) 1124
AluBI AGCT 7 cut(s) 26, 55, 305, 317, 773, 967, 1030
AluI AGCT 7 cut(s) 26, 55, 305, 317, 773, 967, 1030
Alw21I GWGCWC 3 cut(s) 729, 978, 1041
Alw26I GTCTC 1 cut(s) 1093
AlwNI CAGNNNCTG 1 cut(s) 140
Ama87I CYCGRG 1 cut(s) 603
Aor13HI TCCGGA 1 cut(s) 482
AoxI GGCC 2 cut(s) 350, 1054
ApeKI GCWGC 7 cut(s) 305, 314, 475, 599, 608, 695, 770
ApoI RAATTY 3 cut(s) 442, 737, 1081
Asp718I GGTACC 1 cut(s) 885
AspLEI GCGC 2 cut(s) 955, 1105
AspS9I GGNCC 3 cut(s) 158, 176, 350
AsuHPI GGTGA 3 cut(s) 826, 874, 909
AvaI CYCGRG 1 cut(s) 603
AvaII GGWCC 2 cut(s) 158, 176
BaeGI GKGCMC 1 cut(s) 584
BanI GGYRCC 1 cut(s) 885
BanII GRGCYC 1 cut(s) 99
BauI CACGAG 1 cut(s) 452
BbsI GAAGAC 1 cut(s) 992
Bbv12I GWGCWC 3 cut(s) 729, 978, 1041
BbvI GCAGC 7 cut(s) 292, 326, 462, 611, 620, 707, 782
BccI CCATC 2 cut(s) 167, 679
BceAI ACGGC 1 cut(s) 31
BcgI CGANNNNNNTGC 2 cut(s) 597, 631
BciT130I CCWGG 2 cut(s) 141, 564
BcoDI GTCTC 1 cut(s) 1093
BcuI ACTAGT 1 cut(s) 535
BfaI CTAG 2 cut(s) 56, 536
BfmI CTRYAG 2 cut(s) 968, 1031
BisI GCNGC 9 cut(s) 306, 315, 476, 600, 609, 696, 759, 771, 843
BlsI GCNGC 9 cut(s) 307, 316, 477, 601, 610, 697, 760, 772, 844
BmcAI AGTACT 2 cut(s) 669, 852
Bme1390I CCNGG 2 cut(s) 141, 564
Bme18I GGWCC 2 cut(s) 158, 176
BmeT110I CYCGRG 1 cut(s) 603
BmgBI CACGTC 1 cut(s) 146
BmgT120I GGNCC 3 cut(s) 158, 176, 350
BmiI GGNNCC 4 cut(s) 151, 178, 871, 887
BmrFI CCNGG 2 cut(s) 141, 564
BmrI ACTGGG 1 cut(s) 128
BmsI GCATC 3 cut(s) 355, 801, 854
BmuI ACTGGG 1 cut(s) 128
BpiI GAAGAC 1 cut(s) 992
BpmI CTGGAG 3 cut(s) 366, 546, 856
Bsa29I ATCGAT 1 cut(s) 324
BsaJI CCNNGG 3 cut(s) 123, 208, 825
BsaWI WCCGGW 1 cut(s) 482
BsaXI ACNNNNNCTCC 4 cut(s) 960, 990, 1023, 1053
Bsc4I CCNNNNNNNGG 6 cut(s) 140, 146, 236, 563, 795, 895
Bse118I RCCGGY 1 cut(s) 1052
Bse1I ACTGG 1 cut(s) 134
Bse3DI GCAATG 3 cut(s) 472, 837, 1069
BseAI TCCGGA 1 cut(s) 482
BseBI CCWGG 2 cut(s) 141, 564
BseCI ATCGAT 1 cut(s) 324
BseDI CCNNGG 3 cut(s) 123, 208, 825
BseGI GGATG 3 cut(s) 119, 332, 1115
BseLI CCNNNNNNNGG 6 cut(s) 140, 146, 236, 563, 795, 895
BseMI GCAATG 3 cut(s) 472, 837, 1069
BseMII CTCAG 1 cut(s) 42
BseNI ACTGG 1 cut(s) 134
BseRI GAGGAG 1 cut(s) 1088
BseSI GKGCMC 1 cut(s) 584
BseXI GCAGC 7 cut(s) 292, 326, 462, 611, 620, 707, 782
Bsh1236I CGCG 3 cut(s) 619, 758, 1105
Bsh1285I CGRYCG 1 cut(s) 324
BshFI GGCC 2 cut(s) 352, 1056
BshNI GGYRCC 1 cut(s) 885
BshVI ATCGAT 1 cut(s) 324
BsiEI CGRYCG 1 cut(s) 324
BsiHKAI GWGCWC 3 cut(s) 729, 978, 1041
BsiHKCI CYCGRG 1 cut(s) 603
BsiSI CCGG 2 cut(s) 483, 1053
BslFI GGGAC 3 cut(s) 162, 212, 761
BslI CCNNNNNNNGG 6 cut(s) 140, 146, 236, 563, 795, 895
BsmAI GTCTC 1 cut(s) 1093
BsmFI GGGAC 3 cut(s) 162, 212, 761
BsmI GAATGC 2 cut(s) 253, 368
BsnI GGCC 2 cut(s) 352, 1056
BsoBI CYCGRG 1 cut(s) 603
Bsp1286I GDGCHC 5 cut(s) 99, 584, 729, 978, 1041
Bsp13I TCCGGA 1 cut(s) 482
Bsp143I GATC 2 cut(s) 321, 325
Bsp19I CCATGG 2 cut(s) 208, 825
Bsp68I TCGCGA 1 cut(s) 619
BspACI CCGC 8 cut(s) 230, 584, 643, 647, 758, 843, 899, 936
BspANI GGCC 2 cut(s) 352, 1056
BspCNI CTCAG 1 cut(s) 43
BspDI ATCGAT 1 cut(s) 324
BspEI TCCGGA 1 cut(s) 482
BspFNI CGCG 3 cut(s) 619, 758, 1105
BspLI GGNNCC 4 cut(s) 151, 178, 871, 887
BspT107I GGYRCC 1 cut(s) 885
BsrDI GCAATG 3 cut(s) 472, 837, 1069
BsrFI RCCGGY 1 cut(s) 1052
BsrI ACTGG 1 cut(s) 134
BssAI RCCGGY 1 cut(s) 1052
BssECI CCNNGG 3 cut(s) 123, 208, 825
BssMI GATC 2 cut(s) 321, 325
BssSI CACGAG 1 cut(s) 452
BssT1I CCWWGG 3 cut(s) 123, 208, 825
Bst2BI CACGAG 1 cut(s) 452
Bst2UI CCWGG 2 cut(s) 141, 564
Bst4CI ACNGT 4 cut(s) 491, 512, 885, 890
Bst6I CTCTTC 1 cut(s) 1098
BstAPI GCANNNNNTGC 1 cut(s) 596
BstC8I GCNNGC 6 cut(s) 584, 588, 647, 768, 965, 1028
BstDEI CTNAG 1 cut(s) 51
BstDSI CCRYGG 2 cut(s) 208, 825
BstF5I GGATG 3 cut(s) 119, 332, 1115
BstFNI CGCG 3 cut(s) 619, 758, 1105
BstHHI GCGC 2 cut(s) 955, 1105
BstKTI GATC 2 cut(s) 324, 328
BstMAI GTCTC 1 cut(s) 1093
BstMBI GATC 2 cut(s) 321, 325
BstMCI CGRYCG 1 cut(s) 324
BstNI CCWGG 2 cut(s) 141, 564
BstNSI RCATGY 1 cut(s) 770
BstSCI CCNGG 2 cut(s) 139, 562
BstSFI CTRYAG 2 cut(s) 968, 1031
BstSLI GKGCMC 1 cut(s) 584
BstUI CGCG 3 cut(s) 619, 758, 1105
BstV1I GCAGC 7 cut(s) 292, 326, 462, 611, 620, 707, 782
BstV2I GAAGAC 1 cut(s) 992
Bsu15I ATCGAT 1 cut(s) 324
BsuRI GGCC 2 cut(s) 352, 1056
BsuTUI ATCGAT 1 cut(s) 324
BtgI CCRYGG 2 cut(s) 208, 825
BtgZI GCGATG 1 cut(s) 698
BtrI CACGTC 1 cut(s) 146
BtsCI GGATG 3 cut(s) 119, 332, 1115
BtsI GCAGTG 2 cut(s) 465, 1057
BtsIMutI CAGTG 3 cut(s) 141, 465, 1057
BtuMI TCGCGA 1 cut(s) 619
Cac8I GCNNGC 6 cut(s) 584, 588, 647, 768, 965, 1028
CaiI CAGNNNCTG 1 cut(s) 140
CfoI GCGC 2 cut(s) 955, 1105
Cfr10I RCCGGY 1 cut(s) 1052
Cfr13I GGNCC 3 cut(s) 158, 176, 350
ClaI ATCGAT 1 cut(s) 324
CseI GACGC 1 cut(s) 1094
Csp6I GTAC 3 cut(s) 668, 851, 886
CviAII CATG 7 cut(s) 190, 209, 289, 568, 691, 767, 826
CviQI GTAC 3 cut(s) 668, 851, 886
DdeI CTNAG 1 cut(s) 51
DpnI GATC 2 cut(s) 323, 327
DpnII GATC 2 cut(s) 321, 325
DrdI GACNNNNNNGTC 1 cut(s) 224
DseDI GACNNNNNNGTC 1 cut(s) 224
EaeI YGGCCR 1 cut(s) 1054
Eam1104I CTCTTC 1 cut(s) 1098
EarI CTCTTC 1 cut(s) 1098
EciI GGCGGA 1 cut(s) 632
Eco130I CCWWGG 3 cut(s) 123, 208, 825
Eco24I GRGCYC 1 cut(s) 99
Eco47I GGWCC 2 cut(s) 158, 176
Eco57I CTGAAG 2 cut(s) 914, 1079
Eco88I CYCGRG 1 cut(s) 603
EcoRI GAATTC 1 cut(s) 1081
EcoRII CCWGG 2 cut(s) 139, 562
EcoT14I CCWWGG 3 cut(s) 123, 208, 825
EcoT22I ATGCAT 1 cut(s) 370
EcoT38I GRGCYC 1 cut(s) 99
ErhI CCWWGG 3 cut(s) 123, 208, 825
FaeI CATG 7 cut(s) 193, 212, 292, 571, 694, 770, 829
FaqI GGGAC 3 cut(s) 162, 212, 761
FatI CATG 7 cut(s) 189, 208, 288, 567, 690, 766, 825
FauI CCCGC 3 cut(s) 237, 591, 654
FauNDI CATATG 1 cut(s) 247
Fnu4HI GCNGC 9 cut(s) 306, 315, 476, 600, 609, 696, 759, 771, 843
FokI GGATG 3 cut(s) 106, 319, 1102
FriOI GRGCYC 1 cut(s) 99
Fsp4HI GCNGC 9 cut(s) 306, 315, 476, 600, 609, 696, 759, 771, 843
FspBI CTAG 2 cut(s) 56, 536
GlaI GCGC 2 cut(s) 954, 1104
GluI GCNGC 9 cut(s) 306, 315, 476, 600, 609, 696, 759, 771, 843
GsuI CTGGAG 3 cut(s) 366, 546, 856
HaeIII GGCC 2 cut(s) 352, 1056
HapII CCGG 2 cut(s) 483, 1053
HgaI GACGC 1 cut(s) 1094
HhaI GCGC 2 cut(s) 955, 1105
Hin1II CATG 7 cut(s) 193, 212, 292, 571, 694, 770, 829
Hin6I GCGC 2 cut(s) 953, 1103
HinP1I GCGC 2 cut(s) 953, 1103
HinfI GANTC 2 cut(s) 5, 422
HpaII CCGG 2 cut(s) 483, 1053
HphI GGTGA 3 cut(s) 826, 874, 909
Hpy166II GTNNAC 2 cut(s) 834, 917
Hpy188I TCNGA 5 cut(s) 52, 259, 798, 894, 924
Hpy188III TCNNGA 5 cut(s) 237, 452, 483, 618, 873
Hpy8I GTNNAC 2 cut(s) 834, 917
HpyAV CCTTC 4 cut(s) 121, 665, 889, 1119
HpyCH4III ACNGT 4 cut(s) 491, 512, 885, 890
HpyCH4IV ACGT 1 cut(s) 145
HpyF3I CTNAG 1 cut(s) 51
HpySE526I ACGT 1 cut(s) 145
Hsp92II CATG 7 cut(s) 193, 212, 292, 571, 694, 770, 829
HspAI GCGC 2 cut(s) 953, 1103
Kpn2I TCCGGA 1 cut(s) 482
KpnI GGTACC 1 cut(s) 889
Kzo9I GATC 2 cut(s) 321, 325
LmnI GCTCC 6 cut(s) 31, 149, 680, 875, 981, 1044
Lsp1109I GCAGC 7 cut(s) 292, 326, 462, 611, 620, 707, 782
LweI GCATC 3 cut(s) 355, 801, 854
MaeI CTAG 2 cut(s) 56, 536
MaeII ACGT 1 cut(s) 145
MaeIII GTNAC 3 cut(s) 32, 215, 946
MalI GATC 2 cut(s) 323, 327
MboI GATC 2 cut(s) 321, 325
MboII GAAGA 4 cut(s) 182, 397, 997, 1085
MhlI GDGCHC 5 cut(s) 99, 584, 729, 978, 1041
MluCI AATT 7 cut(s) 16, 162, 181, 406, 442, 737, 1081
Mph1103I ATGCAT 1 cut(s) 370
MroI TCCGGA 1 cut(s) 482
MslI CAYNNNNRTG 3 cut(s) 213, 1062, 1124
MspA1I CMGCKG 2 cut(s) 773, 938
MspI CCGG 2 cut(s) 483, 1053
MspR9I CCNGG 2 cut(s) 141, 564
Mva1269I GAATGC 2 cut(s) 253, 368
MvaI CCWGG 2 cut(s) 141, 564
MvnI CGCG 3 cut(s) 619, 758, 1105
NcoI CCATGG 2 cut(s) 208, 825
NdeI CATATG 1 cut(s) 247
NdeII GATC 2 cut(s) 321, 325
NlaIII CATG 7 cut(s) 193, 212, 292, 571, 694, 770, 829
NlaIV GGNNCC 4 cut(s) 151, 178, 871, 887
NmuCI GTSAC 3 cut(s) 32, 215, 946
NruI TCGCGA 1 cut(s) 619
NsiI ATGCAT 1 cut(s) 370
NspI RCATGY 1 cut(s) 770
OliI CACNNNNGTG 1 cut(s) 1124
PaeI GCATGC 1 cut(s) 770
PctI GAATGC 2 cut(s) 253, 368
PfeI GAWTC 2 cut(s) 5, 422
PflMI CCANNNNNTGG 1 cut(s) 140
PkrI GCNGC 9 cut(s) 307, 316, 477, 601, 610, 697, 760, 772, 844
Ple19I CGATCG 1 cut(s) 324
Psp6I CCWGG 2 cut(s) 139, 562
PspGI CCWGG 2 cut(s) 139, 562
PspN4I GGNNCC 4 cut(s) 151, 178, 871, 887
PspPI GGNCC 3 cut(s) 158, 176, 350
PstNI CAGNNNCTG 1 cut(s) 140
PvuI CGATCG 1 cut(s) 324
PvuII CAGCTG 1 cut(s) 773
RruI TCGCGA 1 cut(s) 619
RsaI GTAC 3 cut(s) 669, 852, 887
RsaNI GTAC 3 cut(s) 668, 851, 886
RseI CAYNNNNRTG 3 cut(s) 213, 1062, 1124
SatI GCNGC 9 cut(s) 306, 315, 476, 600, 609, 696, 759, 771, 843
Sau3AI GATC 2 cut(s) 321, 325
Sau96I GGNCC 3 cut(s) 158, 176, 350
ScaI AGTACT 2 cut(s) 669, 852
ScrFI CCNGG 2 cut(s) 141, 564
SduI GDGCHC 5 cut(s) 99, 584, 729, 978, 1041
SfaNI GCATC 3 cut(s) 355, 801, 854
SfcI CTRYAG 2 cut(s) 968, 1031
SinI GGWCC 2 cut(s) 158, 176
SmiMI CAYNNNNRTG 3 cut(s) 213, 1062, 1124
SpeI ACTAGT 1 cut(s) 535
SphI GCATGC 1 cut(s) 770
Sse9I AATT 7 cut(s) 16, 162, 181, 406, 442, 737, 1081
SsiI CCGC 8 cut(s) 230, 584, 643, 647, 758, 843, 899, 936
SspMI CTAG 2 cut(s) 56, 536
StyD4I CCNGG 2 cut(s) 139, 562
StyI CCWWGG 3 cut(s) 123, 208, 825
TaaI ACNGT 4 cut(s) 491, 512, 885, 890
TaiI ACGT 1 cut(s) 148
TaqI TCGA 4 cut(s) 274, 324, 363, 413
TasI AATT 7 cut(s) 16, 162, 181, 406, 442, 737, 1081
TatI WGTACW 2 cut(s) 667, 850
TauI GCSGC 2 cut(s) 761, 845
TfiI GAWTC 2 cut(s) 5, 422
TscAI CASTG 3 cut(s) 141, 465, 1064
TseFI GTSAC 3 cut(s) 32, 215, 946
TseI GCWGC 7 cut(s) 305, 314, 475, 599, 608, 695, 770
Tsp45I GTSAC 3 cut(s) 32, 215, 946
TspDTI ATGAA 2 cut(s) 584, 772
TspGWI ACGGA 1 cut(s) 234
TspRI CASTG 3 cut(s) 141, 465, 1064
Van91I CCANNNNNTGG 1 cut(s) 140
VpaK11BI GGWCC 2 cut(s) 158, 176
XapI RAATTY 3 cut(s) 442, 737, 1081
XceI RCATGY 1 cut(s) 770
XcmI CCANNNNNNNNNTGG 1 cut(s) 187
XspI CTAG 2 cut(s) 56, 536
ZrmI AGTACT 2 cut(s) 669, 852
Zsp2I ATGCAT 1 cut(s) 370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.