FvH4_7g25681

NO-associated protein 1, chloroplastic

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Forward (+)
19603297 .. 19603809
513 bp
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UTR
Exon/CDS
Intron
FvH4_7g25681.t1

Sequence Viewer

Length: 261 bp
ATGTGCAAAGGCCAGCATGTGATGTGGCTATATCAGGCTTTGGGTGGATTAGTATTGAACCTTATTTGCAGATTATTAAGAAGTTCTGATTCAAATTCAGAAAAAACTGCAGGGGAACTGCATTTAGCTGTGCATGTCCCCAAGCCAGTCGAAATATTTGTTAGGTCTCCAATCCCAGTGGGTAAGTCTGGAGCAGAGTGGTATCAGTACCGGGAGTTGACCGAGAAGGAAGAGGAAGAAAGACCAAAATGGCATTACTGA

Protein Analysis

87

Amino Acids

9.96

Weight (kDa)

6.9

Isoelectric Point (pI)

59.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 94
AfaI GTAC 1 cut(s) 209
AgsI TTSAA 2 cut(s) 58, 93
AluBI AGCT 1 cut(s) 128
AluI AGCT 1 cut(s) 128
Alw26I GTCTC 1 cut(s) 171
AoxI GGCC 1 cut(s) 10
ApoI RAATTY 1 cut(s) 94
AsuC2I CCSGG 1 cut(s) 212
BcnI CCSGG 1 cut(s) 212
BcoDI GTCTC 1 cut(s) 171
BfmI CTRYAG 1 cut(s) 108
Bme1390I CCNGG 1 cut(s) 212
BmrFI CCNGG 1 cut(s) 212
BmrI ACTGGG 1 cut(s) 170
BmuI ACTGGG 1 cut(s) 170
BpmI CTGGAG 1 cut(s) 210
BpuMI CCSGG 1 cut(s) 212
BsaI GGTCTC 1 cut(s) 171
Bse1I ACTGG 2 cut(s) 146, 176
BseNI ACTGG 2 cut(s) 146, 176
BshFI GGCC 1 cut(s) 12
BsiSI CCGG 1 cut(s) 211
BslFI GGGAC 1 cut(s) 122
BsmAI GTCTC 1 cut(s) 171
BsmFI GGGAC 1 cut(s) 122
BsnI GGCC 1 cut(s) 12
Bso31I GGTCTC 1 cut(s) 171
BspANI GGCC 1 cut(s) 12
BspMAI CTGCAG 1 cut(s) 112
BspTNI GGTCTC 1 cut(s) 171
BsrI ACTGG 2 cut(s) 146, 176
Bst6I CTCTTC 1 cut(s) 225
BstC8I GCNNGC 1 cut(s) 14
BstMAI GTCTC 1 cut(s) 171
BstNSI RCATGY 2 cut(s) 20, 137
BstSCI CCNGG 1 cut(s) 210
BstSFI CTRYAG 1 cut(s) 108
BsuRI GGCC 1 cut(s) 12
BtsIMutI CAGTG 1 cut(s) 183
Cac8I GCNNGC 1 cut(s) 14
Csp6I GTAC 1 cut(s) 208
CspCI CAANNNNNGTGG 2 cut(s) 159, 194
CviAII CATG 2 cut(s) 17, 134
CviJI RGCY 5 cut(s) 12, 28, 38, 128, 145
CviKI_1 RGCY 5 cut(s) 12, 28, 38, 128, 145
CviQI GTAC 1 cut(s) 208
Eam1104I CTCTTC 1 cut(s) 225
EarI CTCTTC 1 cut(s) 225
Eco31I GGTCTC 1 cut(s) 171
FaeI CATG 2 cut(s) 20, 137
FaiI YATR 3 cut(s) 18, 31, 135
FaqI GGGAC 1 cut(s) 122
FatI CATG 2 cut(s) 16, 133
GsuI CTGGAG 1 cut(s) 210
HaeIII GGCC 1 cut(s) 12
HapII CCGG 1 cut(s) 211
Hin1II CATG 2 cut(s) 20, 137
HincII GTYRAC 1 cut(s) 219
HindII GTYRAC 1 cut(s) 219
HinfI GANTC 1 cut(s) 89
HpaII CCGG 1 cut(s) 211
Hpy166II GTNNAC 1 cut(s) 219
Hpy188I TCNGA 2 cut(s) 88, 100
Hpy188III TCNNGA 1 cut(s) 189
Hpy8I GTNNAC 1 cut(s) 219
HpyAV CCTTC 1 cut(s) 220
HpyCH4V TGCA 5 cut(s) 6, 69, 110, 121, 133
Hsp92II CATG 2 cut(s) 20, 137
LmnI GCTCC 1 cut(s) 191
LpnPI CCDG 7 cut(s) 20, 26, 96, 159, 174, 189, 224
MboII GAAGA 2 cut(s) 242, 248
MluCI AATT 1 cut(s) 94
MnlI CCTC 1 cut(s) 226
MseI TTAA 1 cut(s) 77
MspI CCGG 1 cut(s) 211
MspR9I CCNGG 1 cut(s) 212
NciI CCSGG 1 cut(s) 212
NlaIII CATG 2 cut(s) 20, 137
NspI RCATGY 2 cut(s) 20, 137
PfeI GAWTC 1 cut(s) 89
PstI CTGCAG 1 cut(s) 112
RsaI GTAC 1 cut(s) 209
RsaNI GTAC 1 cut(s) 208
SaqAI TTAA 1 cut(s) 77
ScrFI CCNGG 1 cut(s) 212
SetI ASST 3 cut(s) 63, 130, 167
SfcI CTRYAG 1 cut(s) 108
Sse9I AATT 1 cut(s) 94
SspI AATATT 1 cut(s) 156
StyD4I CCNGG 1 cut(s) 210
TaqI TCGA 1 cut(s) 150
TaqII GACCGA 1 cut(s) 236
TasI AATT 1 cut(s) 94
TfiI GAWTC 1 cut(s) 89
Tru1I TTAA 1 cut(s) 77
Tru9I TTAA 1 cut(s) 77
TscAI CASTG 1 cut(s) 183
TspRI CASTG 1 cut(s) 183
XapI RAATTY 1 cut(s) 94
XceI RCATGY 2 cut(s) 20, 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.