Rroxscaffold_3G00227680

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0007878
Physical Location & Seq
Forward (+)
11887828 .. 11893446
5619 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00227680.1

Sequence Viewer

Length: 630 bp
ATGTCGGCTAATGATCGGATGGTGAGGGAGGTGTGGAGGAAGAGGAAGAGGGTCTTGGTAGTGAGGTTGATGAGGGTTTGGAGTGGGGCGGTGGCGGCGGTGCTCTGCATTGTGGTGGTCGGTCCTCCAAACCCATTAACGGCCGTGGCTTCCAAAACGCCGCCGCCGAAGGAGCCGTCGTTCTATGAGCCGCTAAGGATACTTGAGTCCAAATCCATTACGGAGATCAAGCCGGAGTACAAGCGCTCTTCCTTCCTCTCTACCTTCACCTTCACACTTCCCAAAACCAACCTCCTCAACATCCACAATAACCCCACTCTCATGCTCTACGTTTCTCTCAAGCCCAACGAAACTACCCCTCTCGAGCCCCACTTACCCGTACTCGAAGGGACCAGAGCCGCTGTTCGGAGTCGAAACCAAATTCAATTTCAAGTATTCGGAGAGATAGAGCTTGATGAATTGACCAACTTTCATACGAGACTTGAAATCGAAGGTCGCCGGAAAAGATGGAAACTCGTCGGAAAAGTCAAAACCTTCTTTCATACGATTCTCTCTCTAGGAAGCTTCTTTGAAGAAACCGAGACCACGGACACGAAGAGAACATCAAGTCGAAGTCATCCATATTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

209

Amino Acids

24.13

Weight (kDa)

10.08

Isoelectric Point (pI)

55.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 7 cut(s) 89, 95, 98, 161, 164, 191, 399
AcoI YGGCCR 1 cut(s) 141
AcsI RAATTY 1 cut(s) 420
AfaI GTAC 2 cut(s) 239, 381
AfeI AGCGCT 1 cut(s) 245
AfiI CCNNNNNNNGG 2 cut(s) 139, 405
AgsI TTSAA 4 cut(s) 425, 431, 485, 572
AjuI GAANNNNNNNTTGG 4 cut(s) 38, 70, 411, 443
AloI GAACNNNNNNTCC 2 cut(s) 164, 196
AluBI AGCT 2 cut(s) 451, 564
AluI AGCT 2 cut(s) 451, 564
Alw21I GWGCWC 1 cut(s) 105
Alw26I GTCTC 2 cut(s) 472, 575
Ama87I CYCGRG 1 cut(s) 362
Aor51HI AGCGCT 1 cut(s) 245
AoxI GGCC 1 cut(s) 141
ApoI RAATTY 1 cut(s) 420
ArsI GACNNNNNNTTYG 2 cut(s) 161, 193
AspLEI GCGC 1 cut(s) 246
AspS9I GGNCC 2 cut(s) 122, 390
AsuHPI GGTGA 2 cut(s) 34, 259
AvaI CYCGRG 1 cut(s) 362
AvaII GGWCC 2 cut(s) 122, 390
BaeI ACNNNNGTAYC 2 cut(s) 191, 224
BanII GRGCYC 1 cut(s) 369
Bbv12I GWGCWC 1 cut(s) 105
BccI CCATC 2 cut(s) 13, 501
BceAI ACGGC 3 cut(s) 128, 156, 160
BciVI GTATCC 1 cut(s) 192
BcoDI GTCTC 2 cut(s) 472, 575
BfaI CTAG 1 cut(s) 557
BfoI RGCGCY 1 cut(s) 247
BfuI GTATCC 1 cut(s) 192
BisI GCNGC 5 cut(s) 96, 161, 164, 191, 399
BlsI GCNGC 5 cut(s) 97, 162, 165, 192, 400
Bme18I GGWCC 2 cut(s) 122, 390
BmeT110I CYCGRG 1 cut(s) 362
BmgT120I GGNCC 2 cut(s) 122, 390
BmiI GGNNCC 2 cut(s) 174, 391
Bpu10I CCTNAGC 1 cut(s) 194
BpuEI CTTGAG 2 cut(s) 224, 323
BsaI GGTCTC 1 cut(s) 575
BsaJI CCNNGG 2 cut(s) 144, 585
BsaXI ACNNNNNCTCC 2 cut(s) 164, 194
Bsc4I CCNNNNNNNGG 2 cut(s) 139, 405
BseDI CCNNGG 2 cut(s) 144, 585
BseGI GGATG 3 cut(s) 24, 300, 616
BseLI CCNNNNNNNGG 2 cut(s) 139, 405
BseRI GAGGAG 1 cut(s) 284
BseX3I CGGCCG 1 cut(s) 141
Bsh1285I CGRYCG 1 cut(s) 144
BshFI GGCC 1 cut(s) 143
BsiEI CGRYCG 1 cut(s) 144
BsiHKAI GWGCWC 1 cut(s) 105
BsiHKCI CYCGRG 1 cut(s) 362
BsiSI CCGG 2 cut(s) 233, 499
BslFI GGGAC 1 cut(s) 403
BslI CCNNNNNNNGG 2 cut(s) 139, 405
BsmAI GTCTC 2 cut(s) 472, 575
BsmFI GGGAC 1 cut(s) 403
BsnI GGCC 1 cut(s) 143
Bso31I GGTCTC 1 cut(s) 575
BsoBI CYCGRG 1 cut(s) 362
Bsp1286I GDGCHC 2 cut(s) 105, 369
Bsp143I GATC 2 cut(s) 13, 225
BspACI CCGC 7 cut(s) 89, 95, 98, 161, 164, 191, 399
BspANI GGCC 1 cut(s) 143
BspLI GGNNCC 2 cut(s) 174, 391
BspQI GCTCTTC 1 cut(s) 253
BspTNI GGTCTC 1 cut(s) 575
BssECI CCNNGG 2 cut(s) 144, 585
BssMI GATC 2 cut(s) 13, 225
Bst6I CTCTTC 4 cut(s) 35, 41, 253, 590
BstDEI CTNAG 1 cut(s) 194
BstDSI CCRYGG 2 cut(s) 144, 585
BstF5I GGATG 3 cut(s) 24, 300, 616
BstH2I RGCGCY 1 cut(s) 247
BstHHI GCGC 1 cut(s) 246
BstKTI GATC 2 cut(s) 16, 228
BstMAI GTCTC 2 cut(s) 472, 575
BstMBI GATC 2 cut(s) 13, 225
BstMCI CGRYCG 1 cut(s) 144
BstMWI GCNNNNNNNGC 2 cut(s) 95, 172
BstZI CGGCCG 1 cut(s) 141
BsuI GTATCC 1 cut(s) 192
BsuRI GGCC 1 cut(s) 143
BtgI CCRYGG 2 cut(s) 144, 585
BtsCI GGATG 3 cut(s) 24, 300, 616
CfoI GCGC 1 cut(s) 246
Cfr13I GGNCC 2 cut(s) 122, 390
Csp6I GTAC 2 cut(s) 238, 380
CviAII CATG 1 cut(s) 322
CviQI GTAC 2 cut(s) 238, 380
DdeI CTNAG 1 cut(s) 194
DpnI GATC 2 cut(s) 15, 227
DpnII GATC 2 cut(s) 13, 225
EaeI YGGCCR 1 cut(s) 141
EagI CGGCCG 1 cut(s) 141
Eam1104I CTCTTC 4 cut(s) 35, 41, 253, 590
EarI CTCTTC 4 cut(s) 35, 41, 253, 590
EclXI CGGCCG 1 cut(s) 141
Eco24I GRGCYC 1 cut(s) 369
Eco31I GGTCTC 1 cut(s) 575
Eco47I GGWCC 2 cut(s) 122, 390
Eco47III AGCGCT 1 cut(s) 245
Eco52I CGGCCG 1 cut(s) 141
Eco88I CYCGRG 1 cut(s) 362
EcoT38I GRGCYC 1 cut(s) 369
FaeI CATG 1 cut(s) 325
FaiI YATR 5 cut(s) 186, 323, 474, 543, 622
FalI AAGNNNNNCTT 2 cut(s) 38, 70
FaqI GGGAC 1 cut(s) 403
FatI CATG 1 cut(s) 321
Fnu4HI GCNGC 5 cut(s) 96, 161, 164, 191, 399
FokI GGATG 3 cut(s) 31, 287, 603
FriOI GRGCYC 1 cut(s) 369
Fsp4HI GCNGC 5 cut(s) 96, 161, 164, 191, 399
FspBI CTAG 1 cut(s) 557
GlaI GCGC 1 cut(s) 245
GluI GCNGC 5 cut(s) 96, 161, 164, 191, 399
HaeII RGCGCY 1 cut(s) 247
HaeIII GGCC 1 cut(s) 143
HapII CCGG 2 cut(s) 233, 499
HhaI GCGC 1 cut(s) 246
Hin1II CATG 1 cut(s) 325
Hin6I GCGC 1 cut(s) 244
HinP1I GCGC 1 cut(s) 244
HindIII AAGCTT 1 cut(s) 562
HinfI GANTC 3 cut(s) 206, 409, 547
HpaII CCGG 2 cut(s) 233, 499
HphI GGTGA 2 cut(s) 34, 259
Hpy188I TCNGA 4 cut(s) 18, 408, 440, 521
Hpy188III TCNNGA 1 cut(s) 362
Hpy99I CGWCG 2 cut(s) 181, 521
HpyAV CCTTC 7 cut(s) 163, 262, 274, 280, 380, 485, 544
HpyCH4IV ACGT 1 cut(s) 330
HpyCH4V TGCA 1 cut(s) 108
HpyF10VI GCNNNNNNNGC 2 cut(s) 95, 172
HpyF3I CTNAG 1 cut(s) 194
HpySE526I ACGT 1 cut(s) 330
Hsp92II CATG 1 cut(s) 325
HspAI GCGC 1 cut(s) 244
Kzo9I GATC 2 cut(s) 13, 225
LguI GCTCTTC 1 cut(s) 253
LmnI GCTCC 1 cut(s) 172
LpnPI CCDG 3 cut(s) 246, 406, 512
MaeI CTAG 1 cut(s) 557
MaeII ACGT 1 cut(s) 330
MalI GATC 2 cut(s) 15, 227
MboI GATC 2 cut(s) 13, 225
MboII GAAGA 5 cut(s) 52, 58, 240, 584, 607
MhlI GDGCHC 2 cut(s) 105, 369
MluCI AATT 3 cut(s) 420, 425, 458
MlyI GAGTC 2 cut(s) 215, 418
MmeI TCCRAC 1 cut(s) 499
MseI TTAA 1 cut(s) 137
MslI CAYNNNNRTG 3 cut(s) 113, 320, 625
MspA1I CMGCKG 1 cut(s) 401
MspI CCGG 2 cut(s) 233, 499
MwoI GCNNNNNNNGC 2 cut(s) 95, 172
NdeII GATC 2 cut(s) 13, 225
NlaIII CATG 1 cut(s) 325
NlaIV GGNNCC 2 cut(s) 174, 391
PaeR7I CTCGAG 1 cut(s) 362
PciSI GCTCTTC 1 cut(s) 253
PcsI WCGNNNNNNNCGW 1 cut(s) 164
PfeI GAWTC 1 cut(s) 547
PkrI GCNGC 5 cut(s) 97, 162, 165, 192, 400
PleI GAGTC 2 cut(s) 214, 417
PpsI GAGTC 2 cut(s) 214, 417
PspN4I GGNNCC 2 cut(s) 174, 391
PspPI GGNCC 2 cut(s) 122, 390
RsaI GTAC 2 cut(s) 239, 381
RsaNI GTAC 2 cut(s) 238, 380
RseI CAYNNNNRTG 3 cut(s) 113, 320, 625
SapI GCTCTTC 1 cut(s) 253
SaqAI TTAA 1 cut(s) 137
SatI GCNGC 5 cut(s) 96, 161, 164, 191, 399
Sau3AI GATC 2 cut(s) 13, 225
Sau96I GGNCC 2 cut(s) 122, 390
SchI GAGTC 2 cut(s) 215, 418
SduI GDGCHC 2 cut(s) 105, 369
Sfr274I CTCGAG 1 cut(s) 362
SinI GGWCC 2 cut(s) 122, 390
SlaI CTCGAG 1 cut(s) 362
SmiMI CAYNNNNRTG 3 cut(s) 113, 320, 625
SmlI CTYRAG 3 cut(s) 203, 338, 362
SmoI CTYRAG 3 cut(s) 203, 338, 362
Sse9I AATT 3 cut(s) 420, 425, 458
SsiI CCGC 7 cut(s) 89, 95, 98, 161, 164, 191, 399
SspMI CTAG 1 cut(s) 557
TaiI ACGT 1 cut(s) 333
TaqI TCGA 5 cut(s) 363, 384, 412, 489, 610
TaqII GACCGA 1 cut(s) 110
TasI AATT 3 cut(s) 420, 425, 458
TatI WGTACW 1 cut(s) 237
TauI GCSGC 5 cut(s) 98, 163, 166, 193, 401
TfiI GAWTC 1 cut(s) 547
Tru1I TTAA 1 cut(s) 137
Tru9I TTAA 1 cut(s) 137
TspDTI ATGAA 3 cut(s) 461, 471, 530
TspGWI ACGGA 2 cut(s) 236, 602
VpaK11BI GGWCC 2 cut(s) 122, 390
XapI RAATTY 1 cut(s) 420
XhoI CTCGAG 1 cut(s) 362
XspI CTAG 1 cut(s) 557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.