Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000450.1

Orthogroup ID

OG0007878

Physical Location & Seq

Genomic Coordinates Reverse (-)

31470 .. 37808

Gene Structure 6339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000450.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2505 bp

atggctaggattgccctggctgctcgattccaacaagtaattactcccaatgctctccgatcttatctttcagagttcatctcaaccttcttcttcgtcttcgctgttgtcggttcgatgatgtcctccagaaagctgatgccagatgctgcatcagacccagctagtctggtgttggttgccataaccaatgcctttgcactggcctcggccgtttacatctcggcctccacctccggcggccatgtaaatccggccgtcacctttgccatggccgttggaggtcacattagtatccccattgccctcatctactggatttgccaaatggtggctgctgtcatggcttgccttctcttaaaagtcactgttgttggacagcatgttccaacatatgcaattacagaagagatgacaggatttggagcctcagttttggagggtgtgctaacatttgcactggtttacactgtttatgctgctggtgatccaagacatggtgcattgggtgctatggggcccttagccatcgggctcatggcaggggccaatgtattggcaaccgggccgttctccggcggatccatgaacccggcttgtgcattcgggtctgcagtcattgctggtagcttcaagaaccaagcggtttactgggtcggaccgttgatcggtgctgcagttgctggtcttttgtatgacaatgtggtcttccctattcaagattcgagtactgggaatgcagatggaattttgctcttcccttctatcccggtcctggttgaaatccacatcatcaccaatcctccaaacccattaacggccatggcgcctaaaaccctctcctccttcctctctcccttcacctttacactccccaaccccaagctcctcaacctcaacctccaccccagccccactctcatcctctgccgattctctcagccccaccagaaaccacccctctcggagccccagttaccccaacccgaaggcaccggagccgctgctcccacccccggcgaccgtttcctcgaaagccgccgctccttcgacgcggctaagatcttgctcaaggaaaagaagaagaagcggctcaaagagaagcccttgaagctttccaccgtcgtcgcttgctgttacggttgcggagctccgttacagacttccgagcccgacgccccgggttattctgacccggagacctatgcattgaagaagaagcaccaccagcttagaactgttatatgtggaaggtgcaagcttttgtcccatggccacatgataactgctgtgggtgggaatggtggttattctggcgggaagcagttcatcatggcggaacagcttcgggagaagctctcgcatttgcgctacgagagagcgttgatagttaaattggttgatattgtggacttcaatggtagctttttggctcgtgtgcgcgatttggctggtgcgaatcccataatattagtcattactaaggttgatttacttcccaaggggactgattttaattgtattggtgattgggttgtggaggccaccataaagaagaagcttaatgttatgagcgttcatctgacgagttcaaagtctttggttggagtagctggagttgcatcagagattcaaaaggagaagaaggggcgggacgtgtatgttatggggtcggcaaatgttgggaaatcggctttcatcagtgctttactgaaactgatggcggaaaaggatccagttgctgcatcagcgcagaagtacaaaccaatacaatctgctgttcctggaactaccttgggtccaattcaaataaatgctttcctaggaggagggaaattatatgatacacctggagttcacctccaccataggcaagcagcagtggttcattcagaagacctacctgcccttgctcctcaaagtcggcttaggggtcaatctttgcctaattctcaggtttcctctggaaatataacaacatggaaaagcaattctaatgatttgaatggctattcaatattctggggaggtcttgtcagagtagatgtcttgaaggttctccctgaaacacgtttaacattttatgggccgaagagtcttcagattcatatggtacccactgatgaggcggatgaattttaccagaaacaagttggagttttattgacacctccaactgggaaagaaagggcagatgaatggagaggactcgactctcagcgtcaattgcagataaaagttgaagatgtgcaaaggcctgcatgtgatgtggctatatcaggcttaggatggattagcatcgaacctatttgcagattattgagaagttctgattcaaattcagaaaaaactgcaggggaactgcatttagctgtgcatgtccccaagccagtcgaaatatttgttaggtctccaatcccagtgggcaagtctggagcagagtggtatcagtatcgggagttgaccgaaaaggaagaggaagaaagaccaaaatggcattattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0001505 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006109 GO:0006807 GO:0006809 GO:0006950 GO:0006970 GO:0006979 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009657 GO:0009668 GO:0009889 GO:0009987 GO:0010027 GO:0010035 GO:0010193 GO:0010322 GO:0010565 GO:0010675 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0017144 GO:0019216 GO:0019220 GO:0019222 GO:0019747 GO:0022613 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0034641 GO:0042133 GO:0042136 GO:0042221 GO:0042254 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046209 GO:0046677 GO:0046890 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051246 GO:0060255 GO:0061024 GO:0062012 GO:0065007 GO:0065008 GO:0071071 GO:0071840 GO:0072593 GO:0080090 GO:0099402 GO:1901700 GO:1903409 GO:1903725 GO:2001057

KEGG Pathways

Metabolic & Signaling

ko00220 ko00330 ko01100 ko01110 ko01130 ko04626 map00220 map00330 map01100 map01110 map01130 map04626

Pfam Domains

Protein Families

MMR_HSR1

Protein Analysis

834

Amino Acids

89.75

Weight (kDa)

9.03

Isoelectric Point (pI)

39.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007878)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47450 AT3G47450
fragaria_vesca	FvH4_7g25681 FvH4_7g27380 FvH4_7g27380 FvH4_7g28391
malus_domestica	MD07G1252900.v1.1
prunus_persica	Prupe.2G276500_v2.0.a1
pyrus_communis	pycom07g22550
rosa_chinensis	RchiOBHm_Chr1g0374211
rosa_laevigata	RLG00000026755
rosa_multiflora	Rmu_co8240197.1_g000001 Rmu_ssc0000007.1_g000041 Rmu_ssc0000450.1_g000005
rosa_roxburghii	Rroxscaffold_3G00227680 Rroxscaffold_4G00283640 Rroxscaffold_7G00194520
rosa_rugosa	Rorug01G0381400 Rorug01G0381500
rosa_samantha	Rh1AG392400 Rh1BG356400 Rh1CG369400 Rh1DG386900
rosa_wichuraiana	Rw1G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	704
Acc36I	ACCTGC	1 cut(s)	1912
Acc65I	GGTACC	1 cut(s)	2113
AccB1I	GGYRCC	3 cut(s)	826, 992, 2113
AccB7I	CCANNNNNTGG	2 cut(s)	331, 497
AccBSI	CCGCTC	1 cut(s)	1044
AccII	CGCG	2 cut(s)	1055, 1443
AclWI	GGATC	5 cut(s)	482, 576, 589, 1727, 1740
AcoI	YGGCCR	6 cut(s)	210, 241, 255, 273, 819, 1273
AcsI	RAATTY	3 cut(s)	747, 2135, 2338
AcuI	CTGAAG	1 cut(s)	2084
AcyI	GRCGYC	2 cut(s)	827, 1176
AfaI	GTAC	3 cut(s)	730, 1760, 2115
AfiI	CCNNNNNNNGG	8 cut(s)	331, 497, 575, 668, 775, 817, 1016, 2177
AflIII	ACRYGT	2 cut(s)	1656, 2069
AjiI	CACGTC	1 cut(s)	1657
AjnI	CCWGG	4 cut(s)	15, 774, 1783, 1849
AloI	GAACNNNNNNTCC	2 cut(s)	369, 401
Alw21I	GWGCWC	1 cut(s)	1153
Alw26I	GTCTC	2 cut(s)	1193, 2415
AlwI	GGATC	5 cut(s)	482, 576, 589, 1727, 1740
AlwNI	CAGNNNCTG	3 cut(s)	149, 683, 1742
Ama87I	CYCGRG	1 cut(s)	1180
ApaI	GGGCCC	1 cut(s)	522
ApeKI	GCWGC	8 cut(s)	20, 149, 335, 479, 674, 1004, 1742, 1877
ApoI	RAATTY	3 cut(s)	747, 2135, 2338
Asp700I	GAANNNNTTC	2 cut(s)	1325, 1344
Asp718I	GGTACC	1 cut(s)	2113
AspA2I	CCTAGG	1 cut(s)	1822
AspLEI	GCGC	4 cut(s)	829, 1371, 1443, 1753
AspS9I	GGNCC	8 cut(s)	518, 519, 546, 566, 659, 772, 1799, 2087
AsuC2I	CCSGG	7 cut(s)	565, 593, 770, 1017, 1181, 1182, 1196
AsuHPI	GGTGA	6 cut(s)	253, 497, 787, 853, 1538, 1850
AvaI	CYCGRG	1 cut(s)	1180
AvaII	GGWCC	3 cut(s)	659, 772, 1799
AvrII	CCTAGG	1 cut(s)	1822
BaeGI	GKGCMC	1 cut(s)	522
BaeI	ACNNNNGTAYC	2 cut(s)	277, 310
BalI	TGGCCA	1 cut(s)	1275
BamHI	GGATCC	2 cut(s)	581, 1732
BanI	GGYRCC	3 cut(s)	826, 992, 2113
BanII	GRGCYC	5 cut(s)	522, 537, 972, 1153, 1173
BauI	CACGAG	1 cut(s)	1434
BbsI	GAAGAC	4 cut(s)	91, 700, 1902, 2090
Bbv12I	GWGCWC	1 cut(s)	1153
BbvI	GCAGC	8 cut(s)	7, 136, 322, 466, 661, 991, 1729, 1889
BccI	CCATC	4 cut(s)	536, 737, 1714, 2283
BceAI	ACGGC	5 cut(s)	197, 242, 260, 553, 834
BcgI	CGANNNNNNTGC	2 cut(s)	189, 223
BciT130I	CCWGG	4 cut(s)	17, 776, 1785, 1851
BciVI	GTATCC	1 cut(s)	305
BcnI	CCSGG	7 cut(s)	565, 593, 770, 1017, 1181, 1182, 1196
BcoDI	GTCTC	2 cut(s)	1193, 2415
BfaI	CTAG	3 cut(s)	6, 165, 1823
BfmI	CTRYAG	3 cut(s)	612, 675, 2352
BfoI	RGCGCY	1 cut(s)	830
BfuAI	ACCTGC	1 cut(s)	1912
BfuI	GTATCC	1 cut(s)	305
BglII	AGATCT	1 cut(s)	1062
BlnI	CCTAGG	1 cut(s)	1822
BmcAI	AGTACT	1 cut(s)	730
Bme18I	GGWCC	3 cut(s)	659, 772, 1799
BmeT110I	CYCGRG	1 cut(s)	1180
BmgBI	CACGTC	1 cut(s)	1657
BmgT120I	GGNCC	8 cut(s)	518, 519, 546, 566, 659, 772, 1799, 2087
BmrI	ACTGGG	5 cut(s)	661, 741, 967, 2187, 2414
BmsI	GCATC	6 cut(s)	129, 136, 161, 1631, 1754, 2307
BmuI	ACTGGG	5 cut(s)	661, 741, 967, 2187, 2414
BpiI	GAAGAC	4 cut(s)	91, 700, 1902, 2090
BplI	GAGNNNNNCTC	6 cut(s)	65, 97, 1343, 1375, 1845, 1877
BpmI	CTGGAG	4 cut(s)	112, 1635, 1872, 2454
Bpu10I	CCTNAGC	3 cut(s)	523, 1928, 2284
BpuEI	CTTGAG	1 cut(s)	1055
BpuMI	CCSGG	7 cut(s)	565, 593, 770, 1017, 1181, 1182, 1196
BsaBI	GATNNNNATC	1 cut(s)	2297
BsaHI	GRCGYC	2 cut(s)	827, 1176
BsaI	GGTCTC	2 cut(s)	1193, 2415
BsaWI	WCCGGW	1 cut(s)	995
BsaXI	ACNNNNNCTCC	8 cut(s)	417, 447, 787, 817, 959, 989, 2019, 2049
Bsc4I	CCNNNNNNNGG	8 cut(s)	331, 497, 575, 668, 775, 817, 1016, 2177
Bse3DI	GCAATG	2 cut(s)	300, 618
Bse8I	GATNNNNATC	1 cut(s)	2297
BseBI	CCWGG	4 cut(s)	17, 776, 1785, 1851
BseGI	GGATG	3 cut(s)	921, 2137, 2294
BseJI	GATNNNNATC	1 cut(s)	2297
BseLI	CCNNNNNNNGG	8 cut(s)	331, 497, 575, 668, 775, 817, 1016, 2177
BseMI	GCAATG	2 cut(s)	300, 618
BseMII	CTCAG	4 cut(s)	444, 953, 1967, 2231
BseRI	GAGGAG	4 cut(s)	832, 878, 1842, 1905
BseSI	GKGCMC	1 cut(s)	522
BseX3I	CGGCCG	2 cut(s)	210, 255
BseXI	GCAGC	8 cut(s)	7, 136, 322, 466, 661, 991, 1729, 1889
BseYI	CCCAGC	2 cut(s)	160, 908
Bsh1236I	CGCG	2 cut(s)	1055, 1443
Bsh1285I	CGRYCG	3 cut(s)	213, 258, 1024
BshNI	GGYRCC	3 cut(s)	826, 992, 2113
BsiEI	CGRYCG	3 cut(s)	213, 258, 1024
BsiHKAI	GWGCWC	1 cut(s)	1153
BsiHKCI	CYCGRG	1 cut(s)	1180
BslFI	GGGAC	4 cut(s)	1252, 1519, 1667, 2366
BslI	CCNNNNNNNGG	8 cut(s)	331, 497, 575, 668, 775, 817, 1016, 2177
BsmAI	GTCTC	2 cut(s)	1193, 2415
BsmFI	GGGAC	4 cut(s)	1252, 1519, 1667, 2366
BsmI	GAATGC	2 cut(s)	602, 742
Bso31I	GGTCTC	2 cut(s)	1193, 2415
BsoBI	CYCGRG	1 cut(s)	1180
Bsp120I	GGGCCC	1 cut(s)	518
Bsp1286I	GDGCHC	5 cut(s)	522, 537, 972, 1153, 1173
Bsp143I	GATC	6 cut(s)	59, 487, 581, 666, 1062, 1732
Bsp19I	CCATGG	3 cut(s)	270, 822, 1270
BspCNI	CTCAG	4 cut(s)	443, 952, 1966, 2230
BspFNI	CGCG	2 cut(s)	1055, 1443
BspMAI	CTGCAG	3 cut(s)	616, 679, 2356
BspMI	ACCTGC	1 cut(s)	1912
BspPI	GGATC	5 cut(s)	482, 576, 589, 1727, 1740
BspQI	GCTCTTC	1 cut(s)	761
BspT107I	GGYRCC	3 cut(s)	826, 992, 2113
BspTNI	GGTCTC	2 cut(s)	1193, 2415
BsrBI	CCGCTC	1 cut(s)	1044
BsrDI	GCAATG	2 cut(s)	300, 618
BssMI	GATC	6 cut(s)	59, 487, 581, 666, 1062, 1732
BssNI	GRCGYC	2 cut(s)	827, 1176
BssSI	CACGAG	1 cut(s)	1434
BssT1I	CCWWGG	6 cut(s)	270, 822, 1270, 1500, 1794, 1822
Bst2BI	CACGAG	1 cut(s)	1434
Bst2UI	CCWGG	4 cut(s)	17, 776, 1785, 1851
Bst4CI	ACNGT	7 cut(s)	370, 472, 663, 1025, 1123, 1142, 1240
Bst6I	CTCTTC	4 cut(s)	402, 761, 2087, 2469
BstACI	GRCGYC	2 cut(s)	827, 1176
BstAPI	GCANNNNNTGC	2 cut(s)	509, 620
BstC8I	GCNNGC	5 cut(s)	349, 1132, 1259, 1875, 2259
BstDSI	CCRYGG	3 cut(s)	270, 822, 1270
BstF5I	GGATG	3 cut(s)	921, 2137, 2294
BstFNI	CGCG	2 cut(s)	1055, 1443
BstH2I	RGCGCY	1 cut(s)	830
BstHHI	GCGC	4 cut(s)	829, 1371, 1443, 1753
BstKTI	GATC	6 cut(s)	62, 490, 584, 669, 1065, 1735
BstMAI	GTCTC	2 cut(s)	1193, 2415
BstMBI	GATC	6 cut(s)	59, 487, 581, 666, 1062, 1732
BstMCI	CGRYCG	3 cut(s)	213, 258, 1024
BstNI	CCWGG	4 cut(s)	17, 776, 1785, 1851
BstNSI	RCATGY	3 cut(s)	386, 2265, 2381
BstSFI	CTRYAG	3 cut(s)	612, 675, 2352
BstSLI	GKGCMC	1 cut(s)	522
BstUI	CGCG	2 cut(s)	1055, 1443
BstV1I	GCAGC	8 cut(s)	7, 136, 322, 466, 661, 991, 1729, 1889
BstV2I	GAAGAC	4 cut(s)	91, 700, 1902, 2090
BstX2I	RGATCY	3 cut(s)	581, 1062, 1732
BstXI	CCANNNNNNTGG	1 cut(s)	556
BstYI	RGATCY	3 cut(s)	581, 1062, 1732
BstZI	CGGCCG	2 cut(s)	210, 255
BsuI	GTATCC	1 cut(s)	305
BtgI	CCRYGG	3 cut(s)	270, 822, 1270
BtrI	CACGTC	1 cut(s)	1657
BtsCI	GGATG	3 cut(s)	921, 2137, 2294
BtsI	GCAGTG	1 cut(s)	1887
BtsIMutI	CAGTG	8 cut(s)	200, 366, 458, 468, 1708, 1887, 2118, 2427
BveI	ACCTGC	1 cut(s)	1912
Cac8I	GCNNGC	5 cut(s)	349, 1132, 1259, 1875, 2259
CaiI	CAGNNNCTG	3 cut(s)	149, 683, 1742
CfoI	GCGC	4 cut(s)	829, 1371, 1443, 1753
Cfr13I	GGNCC	8 cut(s)	518, 519, 546, 566, 659, 772, 1799, 2087
Cfr9I	CCCGGG	1 cut(s)	1180
CpoI	CGGWCCG	1 cut(s)	659
CseI	GACGC	3 cut(s)	1061, 1184, 2210
Csp6I	GTAC	3 cut(s)	729, 1759, 2114
CspCI	CAANNNNNGTGG	2 cut(s)	2403, 2438
CspI	CGGWCCG	1 cut(s)	659
CviQI	GTAC	3 cut(s)	729, 1759, 2114
DinI	GGCGCC	1 cut(s)	828
DpnI	GATC	6 cut(s)	61, 489, 583, 668, 1064, 1734
DpnII	GATC	6 cut(s)	59, 487, 581, 666, 1062, 1732
DrdI	GACNNNNNNGTC	1 cut(s)	704
DseDI	GACNNNNNNGTC	1 cut(s)	704
EaeI	YGGCCR	6 cut(s)	210, 241, 255, 273, 819, 1273
EagI	CGGCCG	2 cut(s)	210, 255
Eam1104I	CTCTTC	4 cut(s)	402, 761, 2087, 2469
EarI	CTCTTC	4 cut(s)	402, 761, 2087, 2469
EciI	GGCGGA	4 cut(s)	594, 1352, 1739, 2144
Ecl136II	GAGCTC	1 cut(s)	1151
EclXI	CGGCCG	2 cut(s)	210, 255
Eco130I	CCWWGG	6 cut(s)	270, 822, 1270, 1500, 1794, 1822
Eco147I	AGGCCT	1 cut(s)	2257
Eco24I	GRGCYC	5 cut(s)	522, 537, 972, 1153, 1173
Eco31I	GGTCTC	2 cut(s)	1193, 2415
Eco47I	GGWCC	3 cut(s)	659, 772, 1799
Eco52I	CGGCCG	2 cut(s)	210, 255
Eco53kI	GAGCTC	1 cut(s)	1151
Eco57I	CTGAAG	1 cut(s)	2084
Eco88I	CYCGRG	1 cut(s)	1180
EcoICRI	GAGCTC	1 cut(s)	1151
EcoO109I	RGGNCCY	2 cut(s)	518, 519
EcoRII	CCWGG	4 cut(s)	15, 774, 1783, 1849
EcoT14I	CCWWGG	6 cut(s)	270, 822, 1270, 1500, 1794, 1822
EcoT22I	ATGCAT	1 cut(s)	1210
EcoT38I	GRGCYC	5 cut(s)	522, 537, 972, 1153, 1173
EgeI	GGCGCC	1 cut(s)	828
EheI	GGCGCC	1 cut(s)	828
ErhI	CCWWGG	6 cut(s)	270, 822, 1270, 1500, 1794, 1822
FaqI	GGGAC	4 cut(s)	1252, 1519, 1667, 2366
FauI	CCCGC	2 cut(s)	1310, 1644
FauNDI	CATATG	2 cut(s)	394, 2109
FokI	GGATG	3 cut(s)	908, 2144, 2301
FriOI	GRGCYC	5 cut(s)	522, 537, 972, 1153, 1173
FspBI	CTAG	3 cut(s)	6, 165, 1823
GlaI	GCGC	4 cut(s)	828, 1370, 1442, 1752
GsaI	CCCAGC	2 cut(s)	164, 912
GsuI	CTGGAG	4 cut(s)	112, 1635, 1872, 2454
HaeII	RGCGCY	1 cut(s)	830
HgaI	GACGC	3 cut(s)	1061, 1184, 2210
HhaI	GCGC	4 cut(s)	829, 1371, 1443, 1753
Hin1I	GRCGYC	2 cut(s)	827, 1176
Hin6I	GCGC	4 cut(s)	827, 1369, 1441, 1751
HinP1I	GCGC	4 cut(s)	827, 1369, 1441, 1751
HincII	GTYRAC	1 cut(s)	2463
HindII	GTYRAC	1 cut(s)	2463
HindIII	AAGCTT	3 cut(s)	1112, 1259, 1559
HphI	GGTGA	6 cut(s)	253, 497, 787, 853, 1538, 1850
Hpy166II	GTNNAC	6 cut(s)	217, 466, 649, 1411, 1858, 2463
Hpy188III	TCNNGA	8 cut(s)	129, 634, 719, 1349, 1965, 2050, 2433, 2456
Hpy8I	GTNNAC	6 cut(s)	217, 466, 649, 1411, 1858, 2463
Hpy99I	CGWCG	4 cut(s)	1055, 1127, 1130, 1178
HpyCH4III	ACNGT	7 cut(s)	370, 472, 663, 1025, 1123, 1142, 1240
HpyCH4IV	ACGT	2 cut(s)	1656, 2071
HpySE526I	ACGT	2 cut(s)	1656, 2071
Hsp92I	GRCGYC	2 cut(s)	827, 1176
HspAI	GCGC	4 cut(s)	827, 1369, 1441, 1751
KasI	GGCGCC	1 cut(s)	826
KpnI	GGTACC	1 cut(s)	2117
Kzo9I	GATC	6 cut(s)	59, 487, 581, 666, 1062, 1732
LguI	GCTCTTC	1 cut(s)	761
Lsp1109I	GCAGC	8 cut(s)	7, 136, 322, 466, 661, 991, 1729, 1889
LweI	GCATC	6 cut(s)	129, 136, 161, 1631, 1754, 2307
MaeI	CTAG	3 cut(s)	6, 165, 1823
MaeII	ACGT	2 cut(s)	1656, 2071
MaeIII	GTNAC	6 cut(s)	259, 284, 364, 975, 1136, 1155
MalI	GATC	6 cut(s)	61, 489, 583, 668, 1064, 1734
MbiI	CCGCTC	1 cut(s)	1044
MboI	GATC	6 cut(s)	59, 487, 581, 666, 1062, 1732
MfeI	CAATTG	1 cut(s)	2225
MflI	RGATCY	3 cut(s)	581, 1062, 1732
MhlI	GDGCHC	5 cut(s)	522, 537, 972, 1153, 1173
MlsI	TGGCCA	1 cut(s)	1275
MluNI	TGGCCA	1 cut(s)	1275
Mly113I	GGCGCC	1 cut(s)	827
MlyI	GAGTC	3 cut(s)	2104, 2202, 2207
MmeI	TCCRAC	8 cut(s)	55, 259, 355, 413, 637, 1585, 2134, 2198
Mox20I	TGGCCA	1 cut(s)	1275
Mph1103I	ATGCAT	1 cut(s)	1210
MroXI	GAANNNNTTC	2 cut(s)	1325, 1344
MscI	TGGCCA	1 cut(s)	1275
MseI	TTAA	6 cut(s)	359, 815, 1392, 1515, 1563, 2075
Msp20I	TGGCCA	1 cut(s)	1275
MspA1I	CMGCKG	1 cut(s)	1004
MunI	CAATTG	1 cut(s)	2225
Mva1269I	GAATGC	2 cut(s)	602, 742
MvaI	CCWGG	4 cut(s)	17, 776, 1785, 1851
MvnI	CGCG	2 cut(s)	1055, 1443
NarI	GGCGCC	1 cut(s)	827
NciI	CCSGG	7 cut(s)	565, 593, 770, 1017, 1181, 1182, 1196
NcoI	CCATGG	3 cut(s)	270, 822, 1270
NdeI	CATATG	2 cut(s)	394, 2109
NdeII	GATC	6 cut(s)	59, 487, 581, 666, 1062, 1732
NmeAIII	GCCGAG	2 cut(s)	188, 203
NmuCI	GTSAC	3 cut(s)	259, 284, 364
NsiI	ATGCAT	1 cut(s)	1210
NspI	RCATGY	3 cut(s)	386, 2265, 2381
PceI	AGGCCT	1 cut(s)	2257
PciSI	GCTCTTC	1 cut(s)	761
PctI	GAATGC	2 cut(s)	602, 742
PdmI	GAANNNNTTC	2 cut(s)	1325, 1344
PfeI	GAWTC	7 cut(s)	27, 722, 933, 1459, 1630, 2104, 2333
PflMI	CCANNNNNTGG	2 cut(s)	331, 497
PfoI	TCCNGGA	1 cut(s)	1783
PleI	GAGTC	3 cut(s)	2103, 2202, 2207
PluTI	GGCGCC	1 cut(s)	830
PpsI	GAGTC	3 cut(s)	2103, 2202, 2207
Psp124BI	GAGCTC	1 cut(s)	1153
Psp6I	CCWGG	4 cut(s)	15, 774, 1783, 1849
PspFI	CCCAGC	2 cut(s)	160, 908
PspGI	CCWGG	4 cut(s)	15, 774, 1783, 1849
PspOMI	GGGCCC	1 cut(s)	518
PspPI	GGNCC	8 cut(s)	518, 519, 546, 566, 659, 772, 1799, 2087
PstI	CTGCAG	3 cut(s)	616, 679, 2356
PstNI	CAGNNNCTG	3 cut(s)	149, 683, 1742
PsuI	RGATCY	3 cut(s)	581, 1062, 1732
RsaI	GTAC	3 cut(s)	730, 1760, 2115
RsaNI	GTAC	3 cut(s)	729, 1759, 2114
Rsr2I	CGGWCCG	1 cut(s)	659
RsrII	CGGWCCG	1 cut(s)	659
SacI	GAGCTC	1 cut(s)	1153
SapI	GCTCTTC	1 cut(s)	761
SaqAI	TTAA	6 cut(s)	359, 815, 1392, 1515, 1563, 2075
Sau3AI	GATC	6 cut(s)	59, 487, 581, 666, 1062, 1732
Sau96I	GGNCC	8 cut(s)	518, 519, 546, 566, 659, 772, 1799, 2087
ScaI	AGTACT	1 cut(s)	730
SchI	GAGTC	3 cut(s)	2104, 2202, 2207
SduI	GDGCHC	5 cut(s)	522, 537, 972, 1153, 1173
SfaNI	GCATC	6 cut(s)	129, 136, 161, 1631, 1754, 2307
SfcI	CTRYAG	3 cut(s)	612, 675, 2352
SfoI	GGCGCC	1 cut(s)	828
SinI	GGWCC	3 cut(s)	659, 772, 1799
SmaI	CCCGGG	1 cut(s)	1182
SmlI	CTYRAG	1 cut(s)	1070
SmoI	CTYRAG	1 cut(s)	1070
SseBI	AGGCCT	1 cut(s)	2257
SspDI	GGCGCC	1 cut(s)	826
SspI	AATATT	3 cut(s)	1470, 2019, 2400
SspMI	CTAG	3 cut(s)	6, 165, 1823
SstI	GAGCTC	1 cut(s)	1153
StuI	AGGCCT	1 cut(s)	2257
StyI	CCWWGG	6 cut(s)	270, 822, 1270, 1500, 1794, 1822
TaaI	ACNGT	7 cut(s)	370, 472, 663, 1025, 1123, 1142, 1240
TaiI	ACGT	2 cut(s)	1659, 2074
TaqI	TCGA	8 cut(s)	25, 116, 725, 1032, 1050, 2211, 2301, 2394
TaqII	GACCGA	1 cut(s)	2480
TatI	WGTACW	2 cut(s)	728, 1758
TauI	GCSGC	6 cut(s)	243, 1004, 1041, 1044, 1058, 1093
TfiI	GAWTC	7 cut(s)	27, 722, 933, 1459, 1630, 2104, 2333
Tru1I	TTAA	6 cut(s)	359, 815, 1392, 1515, 1563, 2075
Tru9I	TTAA	6 cut(s)	359, 815, 1392, 1515, 1563, 2075
TscAI	CASTG	8 cut(s)	207, 373, 465, 475, 1708, 1887, 2125, 2427
TseFI	GTSAC	3 cut(s)	259, 284, 364
TseI	GCWGC	8 cut(s)	20, 149, 335, 479, 674, 1004, 1742, 1877
Tsp45I	GTSAC	3 cut(s)	259, 284, 364
TspDTI	ATGAA	9 cut(s)	67, 602, 1318, 1568, 1687, 1877, 2096, 2148, 2211
TspGWI	ACGGA	1 cut(s)	1143
TspMI	CCCGGG	1 cut(s)	1180
TspRI	CASTG	8 cut(s)	207, 373, 465, 475, 1708, 1887, 2125, 2427
Van91I	CCANNNNNTGG	2 cut(s)	331, 497
VpaK11BI	GGWCC	3 cut(s)	659, 772, 1799
XapI	RAATTY	3 cut(s)	747, 2135, 2338
XceI	RCATGY	3 cut(s)	386, 2265, 2381
XcmI	CCANNNNNNNNNTGG	2 cut(s)	535, 2150
XmaI	CCCGGG	1 cut(s)	1180
XmaJI	CCTAGG	1 cut(s)	1822
XmnI	GAANNNNTTC	2 cut(s)	1325, 1344
XspI	CTAG	3 cut(s)	6, 165, 1823
ZrmI	AGTACT	1 cut(s)	730
Zsp2I	ATGCAT	1 cut(s)	1210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.