Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0007878

Physical Location & Seq

Genomic Coordinates Forward (+)

21041017 .. 21042143

Gene Structure 1127 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g28391.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGTACCAACTGATGAGGTGGATGAATTTTACCAGAAACACATTGGAGTCTTACTGACACCTCCAACTGGGAAAGAAAGAGAAGATGAATGGAGAGGTCTCGACTCTCAGCGTCAATTGCAAATAAAAGTTCAAGACGTGCAAAGGCCAGCATGTGATGTCGCTATATCAGGCTTAGGGTGGATTAGTATTGAACCTATTTGCAGATTATTAAAAAGTTCTGATTCAAATTCAGAAAAAACTGCAGGGGAACTGCATTTAGCTGTGCATTTCCCCAAGCCAGTCGAAATATTTGTTAGGTCTCCAATCCCAGTGGGTAAGTCTGGAGCAGTGTGGTATCAGTACCGGGAGTTGACCGAAAAGGAAGAGGAAAAAAGACCAAAATGGCATTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0001505 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006109 GO:0006807 GO:0006809 GO:0006950 GO:0006970 GO:0006979 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009657 GO:0009668 GO:0009889 GO:0009987 GO:0010027 GO:0010035 GO:0010193 GO:0010322 GO:0010565 GO:0010675 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0017144 GO:0019216 GO:0019220 GO:0019222 GO:0019747 GO:0022613 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0034641 GO:0042133 GO:0042136 GO:0042221 GO:0042254 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046209 GO:0046677 GO:0046890 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051246 GO:0060255 GO:0061024 GO:0062012 GO:0065007 GO:0065008 GO:0071071 GO:0071840 GO:0072593 GO:0080090 GO:0099402 GO:1901700 GO:1903409 GO:1903725 GO:2001057

KEGG Pathways

Metabolic & Signaling

ko00220 ko00330 ko01100 ko01110 ko01130 ko04626 map00220 map00330 map01100 map01110 map01130 map04626

Pfam Domains

Protein Families

MMR_HSR1

Protein Analysis

132

Amino Acids

15.1

Weight (kDa)

5.82

Isoelectric Point (pI)

62.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YqeH-like_C	PF21516	5 - 65	2.6e-08	YqeH-like, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007878)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47450 AT3G47450
fragaria_vesca	FvH4_7g25681 FvH4_7g27380 FvH4_7g27380 FvH4_7g28391
malus_domestica	MD07G1252900.v1.1
prunus_persica	Prupe.2G276500_v2.0.a1
pyrus_communis	pycom07g22550
rosa_chinensis	RchiOBHm_Chr1g0374211
rosa_laevigata	RLG00000026755
rosa_multiflora	Rmu_co8240197.1_g000001 Rmu_ssc0000007.1_g000041 Rmu_ssc0000450.1_g000005
rosa_roxburghii	Rroxscaffold_3G00227680 Rroxscaffold_4G00283640 Rroxscaffold_7G00194520
rosa_rugosa	Rorug01G0381400 Rorug01G0381500
rosa_samantha	Rh1AG392400 Rh1BG356400 Rh1CG369400 Rh1DG386900
rosa_wichuraiana	Rw1G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	4
AccB1I	GGYRCC	1 cut(s)	4
AcsI	RAATTY	2 cut(s)	26, 229
AfaI	GTAC	2 cut(s)	6, 344
AfiI	CCNNNNNNNGG	1 cut(s)	68
AgsI	TTSAA	3 cut(s)	134, 194, 228
AjiI	CACGTC	1 cut(s)	139
AluBI	AGCT	1 cut(s)	263
AluI	AGCT	1 cut(s)	263
Alw26I	GTCTC	2 cut(s)	104, 306
AoxI	GGCC	1 cut(s)	146
ApoI	RAATTY	2 cut(s)	26, 229
Asp718I	GGTACC	1 cut(s)	4
AsuC2I	CCSGG	1 cut(s)	347
BanI	GGYRCC	1 cut(s)	4
BcnI	CCSGG	1 cut(s)	347
BcoDI	GTCTC	2 cut(s)	104, 306
BfmI	CTRYAG	1 cut(s)	243
Bme1390I	CCNGG	1 cut(s)	347
BmgBI	CACGTC	1 cut(s)	139
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	347
BmrI	ACTGGG	2 cut(s)	78, 305
BmuI	ACTGGG	2 cut(s)	78, 305
BpmI	CTGGAG	1 cut(s)	345
Bpu10I	CCTNAGC	1 cut(s)	175
BpuMI	CCSGG	1 cut(s)	347
BsaI	GGTCTC	2 cut(s)	104, 306
Bsc4I	CCNNNNNNNGG	1 cut(s)	68
Bse1I	ACTGG	3 cut(s)	73, 281, 311
BseGI	GGATG	1 cut(s)	28
BseLI	CCNNNNNNNGG	1 cut(s)	68
BseMII	CTCAG	1 cut(s)	122
BseNI	ACTGG	3 cut(s)	73, 281, 311
BshFI	GGCC	1 cut(s)	148
BshNI	GGYRCC	1 cut(s)	4
BsiSI	CCGG	1 cut(s)	346
BslI	CCNNNNNNNGG	1 cut(s)	68
BsmAI	GTCTC	2 cut(s)	104, 306
BsnI	GGCC	1 cut(s)	148
Bso31I	GGTCTC	2 cut(s)	104, 306
BspANI	GGCC	1 cut(s)	148
BspCNI	CTCAG	1 cut(s)	121
BspLI	GGNNCC	1 cut(s)	6
BspMAI	CTGCAG	1 cut(s)	247
BspT107I	GGYRCC	1 cut(s)	4
BspTNI	GGTCTC	2 cut(s)	104, 306
BsrI	ACTGG	3 cut(s)	73, 281, 311
Bst6I	CTCTTC	1 cut(s)	360
BstC8I	GCNNGC	1 cut(s)	150
BstDEI	CTNAG	2 cut(s)	108, 175
BstF5I	GGATG	1 cut(s)	28
BstMAI	GTCTC	2 cut(s)	104, 306
BstMWI	GCNNNNNNNGC	1 cut(s)	118
BstNSI	RCATGY	1 cut(s)	156
BstSCI	CCNGG	1 cut(s)	345
BstSFI	CTRYAG	1 cut(s)	243
BsuRI	GGCC	1 cut(s)	148
BtrI	CACGTC	1 cut(s)	139
BtsCI	GGATG	1 cut(s)	28
BtsI	GCAGTG	1 cut(s)	336
BtsIMutI	CAGTG	2 cut(s)	318, 336
Cac8I	GCNNGC	1 cut(s)	150
CseI	GACGC	1 cut(s)	101
Csp6I	GTAC	2 cut(s)	5, 343
CspCI	CAANNNNNGTGG	2 cut(s)	294, 329
CviAII	CATG	1 cut(s)	153
CviJI	RGCY	4 cut(s)	148, 174, 263, 280
CviKI_1	RGCY	4 cut(s)	148, 174, 263, 280
CviQI	GTAC	2 cut(s)	5, 343
DdeI	CTNAG	2 cut(s)	108, 175
Eam1104I	CTCTTC	1 cut(s)	360
EarI	CTCTTC	1 cut(s)	360
Eco31I	GGTCTC	2 cut(s)	104, 306
FaeI	CATG	1 cut(s)	156
FaiI	YATR	2 cut(s)	154, 167
FatI	CATG	1 cut(s)	152
FokI	GGATG	1 cut(s)	35
GsuI	CTGGAG	1 cut(s)	345
HaeIII	GGCC	1 cut(s)	148
HapII	CCGG	1 cut(s)	346
HgaI	GACGC	1 cut(s)	101
Hin1II	CATG	1 cut(s)	156
HincII	GTYRAC	1 cut(s)	354
HindII	GTYRAC	1 cut(s)	354
HinfI	GANTC	3 cut(s)	48, 104, 224
HpaII	CCGG	1 cut(s)	346
Hpy166II	GTNNAC	1 cut(s)	354
Hpy188I	TCNGA	2 cut(s)	223, 235
Hpy188III	TCNNGA	3 cut(s)	101, 134, 324
Hpy8I	GTNNAC	1 cut(s)	354
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	6 cut(s)	121, 142, 204, 245, 256, 268
HpyF10VI	GCNNNNNNNGC	1 cut(s)	118
HpyF3I	CTNAG	2 cut(s)	108, 175
HpySE526I	ACGT	1 cut(s)	138
Hsp92II	CATG	1 cut(s)	156
KpnI	GGTACC	1 cut(s)	8
LmnI	GCTCC	1 cut(s)	326
LpnPI	CCDG	9 cut(s)	47, 54, 156, 162, 231, 294, 309, 324, 359
MaeII	ACGT	1 cut(s)	138
MboII	GAAGA	2 cut(s)	95, 377
MfeI	CAATTG	1 cut(s)	116
MluCI	AATT	3 cut(s)	26, 116, 229
MlyI	GAGTC	2 cut(s)	57, 98
MmeI	TCCRAC	1 cut(s)	89
MnlI	CCTC	4 cut(s)	10, 72, 89, 361
MseI	TTAA	1 cut(s)	212
MspI	CCGG	1 cut(s)	346
MspR9I	CCNGG	1 cut(s)	347
MunI	CAATTG	1 cut(s)	116
MwoI	GCNNNNNNNGC	1 cut(s)	118
NciI	CCSGG	1 cut(s)	347
NlaIII	CATG	1 cut(s)	156
NlaIV	GGNNCC	1 cut(s)	6
NspI	RCATGY	1 cut(s)	156
PfeI	GAWTC	1 cut(s)	224
PleI	GAGTC	2 cut(s)	56, 98
PpsI	GAGTC	2 cut(s)	56, 98
PspN4I	GGNNCC	1 cut(s)	6
PstI	CTGCAG	1 cut(s)	247
RsaI	GTAC	2 cut(s)	6, 344
RsaNI	GTAC	2 cut(s)	5, 343
SaqAI	TTAA	1 cut(s)	212
SchI	GAGTC	2 cut(s)	57, 98
ScrFI	CCNGG	1 cut(s)	347
SetI	ASST	7 cut(s)	21, 64, 100, 141, 199, 265, 302
SfcI	CTRYAG	1 cut(s)	243
Sse9I	AATT	3 cut(s)	26, 116, 229
SspI	AATATT	1 cut(s)	291
StyD4I	CCNGG	1 cut(s)	345
TaiI	ACGT	1 cut(s)	141
TaqI	TCGA	2 cut(s)	102, 285
TaqII	GACCGA	1 cut(s)	371
TasI	AATT	3 cut(s)	26, 116, 229
TfiI	GAWTC	1 cut(s)	224
Tru1I	TTAA	1 cut(s)	212
Tru9I	TTAA	1 cut(s)	212
TscAI	CASTG	2 cut(s)	318, 336
TspDTI	ATGAA	2 cut(s)	39, 102
TspRI	CASTG	2 cut(s)	318, 336
XapI	RAATTY	2 cut(s)	26, 229
XceI	RCATGY	1 cut(s)	156
XcmI	CCANNNNNNNNNTGG	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.