Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0007878

Physical Location & Seq

Genomic Coordinates Forward (+)

49403956 .. 49404393

Gene Structure 438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0381500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGCACTGTTGTGATCCATTCCGAAACTGCCTGGCTAACTTGTTATCTGATGATGGTTCAGAGGAGCCTATTGCTTGCTTAATCCCTGACCCTCTCTTTGACTTCACTCGATCTGTTGCTAAGAGCCTTAAGCTTCCAAGGATGCTACTAAGAACAGGAGGTGCCTCATCCACTATCGTTTATGCCGCATTTCCACTTCTGTGGGAAAAGGGTTACCTCCCAAAACAAGAATCTCAACTAGAAGAGCCAGTAGTAGATCTGTCACCAAGTCAAAGACCTTCCAATGATGAACTCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0001505 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006109 GO:0006807 GO:0006809 GO:0006950 GO:0006970 GO:0006979 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009657 GO:0009668 GO:0009889 GO:0009987 GO:0010027 GO:0010035 GO:0010193 GO:0010322 GO:0010565 GO:0010675 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0017144 GO:0019216 GO:0019220 GO:0019222 GO:0019747 GO:0022613 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0034641 GO:0042133 GO:0042136 GO:0042221 GO:0042254 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046209 GO:0046677 GO:0046890 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051246 GO:0060255 GO:0061024 GO:0062012 GO:0065007 GO:0065008 GO:0071071 GO:0071840 GO:0072593 GO:0080090 GO:0099402 GO:1901700 GO:1903409 GO:1903725 GO:2001057

KEGG Pathways

Metabolic & Signaling

ko00220 ko00330 ko01100 ko01110 ko01130 ko04626 map00220 map00330 map01100 map01110 map01130 map04626

Pfam Domains

Protein Families

MMR_HSR1

Protein Analysis

99

Amino Acids

11.01

Weight (kDa)

4.67

Isoelectric Point (pI)

74.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007878)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47450 AT3G47450
fragaria_vesca	FvH4_7g25681 FvH4_7g27380 FvH4_7g27380 FvH4_7g28391
malus_domestica	MD07G1252900.v1.1
prunus_persica	Prupe.2G276500_v2.0.a1
pyrus_communis	pycom07g22550
rosa_chinensis	RchiOBHm_Chr1g0374211
rosa_laevigata	RLG00000026755
rosa_multiflora	Rmu_co8240197.1_g000001 Rmu_ssc0000007.1_g000041 Rmu_ssc0000450.1_g000005
rosa_roxburghii	Rroxscaffold_3G00227680 Rroxscaffold_4G00283640 Rroxscaffold_7G00194520
rosa_rugosa	Rorug01G0381400 Rorug01G0381500
rosa_samantha	Rh1AG392400 Rh1BG356400 Rh1CG369400 Rh1DG386900
rosa_wichuraiana	Rw1G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	161
AciI	CCGC	1 cut(s)	186
AclWI	GGATC	1 cut(s)	8
AflII	CTTAAG	1 cut(s)	128
AjnI	CCWGG	1 cut(s)	30
AleI	CACNNNNGTG	2 cut(s)	9, 199
AluBI	AGCT	1 cut(s)	133
AluI	AGCT	1 cut(s)	133
AlwI	GGATC	1 cut(s)	8
ArsI	GACNNNNNNTTYG	2 cut(s)	80, 112
AsuHPI	GGTGA	1 cut(s)	255
BanI	GGYRCC	1 cut(s)	161
BccI	CCATC	1 cut(s)	47
BciT130I	CCWGG	1 cut(s)	32
BfaI	CTAG	1 cut(s)	239
BfrI	CTTAAG	1 cut(s)	128
BglII	AGATCT	1 cut(s)	256
BisI	GCNGC	1 cut(s)	186
BlsI	GCNGC	1 cut(s)	187
Bme1390I	CCNGG	1 cut(s)	32
BmiI	GGNNCC	2 cut(s)	66, 163
BmrFI	CCNGG	1 cut(s)	32
BmsI	GCATC	1 cut(s)	132
BsaJI	CCNNGG	1 cut(s)	137
Bse1I	ACTGG	1 cut(s)	248
BseBI	CCWGG	1 cut(s)	32
BseDI	CCNNGG	1 cut(s)	137
BseGI	GGATG	2 cut(s)	147, 167
BseNI	ACTGG	1 cut(s)	248
BseRI	GAGGAG	1 cut(s)	77
BshNI	GGYRCC	1 cut(s)	161
Bsp143I	GATC	3 cut(s)	13, 110, 256
BspACI	CCGC	1 cut(s)	186
BspLI	GGNNCC	2 cut(s)	66, 163
BspPI	GGATC	1 cut(s)	8
BspQI	GCTCTTC	1 cut(s)	237
BspT107I	GGYRCC	1 cut(s)	161
BspTI	CTTAAG	1 cut(s)	128
BsrI	ACTGG	1 cut(s)	248
BssECI	CCNNGG	1 cut(s)	137
BssMI	GATC	3 cut(s)	13, 110, 256
BssT1I	CCWWGG	1 cut(s)	137
Bst2UI	CCWGG	1 cut(s)	32
Bst4CI	ACNGT	1 cut(s)	8
Bst6I	CTCTTC	1 cut(s)	237
BstAFI	CTTAAG	1 cut(s)	128
BstC8I	GCNNGC	1 cut(s)	76
BstDEI	CTNAG	2 cut(s)	120, 149
BstEII	GGTNACC	1 cut(s)	212
BstF5I	GGATG	2 cut(s)	147, 167
BstKTI	GATC	3 cut(s)	16, 113, 259
BstMBI	GATC	3 cut(s)	13, 110, 256
BstNI	CCWGG	1 cut(s)	32
BstPI	GGTNACC	1 cut(s)	212
BstSCI	CCNGG	1 cut(s)	30
BstX2I	RGATCY	1 cut(s)	256
BstXI	CCANNNNNNTGG	1 cut(s)	201
BstYI	RGATCY	1 cut(s)	256
BtsCI	GGATG	2 cut(s)	147, 167
BtsIMutI	CAGTG	1 cut(s)	4
Cac8I	GCNNGC	1 cut(s)	76
CviJI	RGCY	5 cut(s)	35, 67, 126, 133, 247
CviKI_1	RGCY	5 cut(s)	35, 67, 126, 133, 247
DdeI	CTNAG	2 cut(s)	120, 149
DpnI	GATC	3 cut(s)	15, 112, 258
DpnII	GATC	3 cut(s)	13, 110, 256
Eam1104I	CTCTTC	1 cut(s)	237
EarI	CTCTTC	1 cut(s)	237
Eco130I	CCWWGG	1 cut(s)	137
Eco91I	GGTNACC	1 cut(s)	212
EcoO65I	GGTNACC	1 cut(s)	212
EcoRII	CCWGG	1 cut(s)	30
EcoT14I	CCWWGG	1 cut(s)	137
ErhI	CCWWGG	1 cut(s)	137
FaiI	YATR	1 cut(s)	183
Fnu4HI	GCNGC	1 cut(s)	186
FokI	GGATG	2 cut(s)	154, 154
Fsp4HI	GCNGC	1 cut(s)	186
FspBI	CTAG	1 cut(s)	239
GluI	GCNGC	1 cut(s)	186
HindIII	AAGCTT	1 cut(s)	131
HinfI	GANTC	1 cut(s)	230
HphI	GGTGA	1 cut(s)	255
Hpy188I	TCNGA	3 cut(s)	23, 49, 61
HpyAV	CCTTC	1 cut(s)	288
HpyCH4III	ACNGT	1 cut(s)	8
HpyCH4V	TGCA	1 cut(s)	4
HpyF3I	CTNAG	2 cut(s)	120, 149
Kzo9I	GATC	3 cut(s)	13, 110, 256
LguI	GCTCTTC	1 cut(s)	237
LmnI	GCTCC	1 cut(s)	64
LpnPI	CCDG	5 cut(s)	17, 44, 99, 141, 261
LweI	GCATC	1 cut(s)	132
MaeI	CTAG	1 cut(s)	239
MaeIII	GTNAC	2 cut(s)	212, 261
MalI	GATC	3 cut(s)	15, 112, 258
MboI	GATC	3 cut(s)	13, 110, 256
MboII	GAAGA	1 cut(s)	254
MflI	RGATCY	1 cut(s)	256
MnlI	CCTC	5 cut(s)	55, 102, 152, 175, 227
MseI	TTAA	2 cut(s)	80, 129
MslI	CAYNNNNRTG	2 cut(s)	9, 199
MspCI	CTTAAG	1 cut(s)	128
MspR9I	CCNGG	1 cut(s)	32
MvaI	CCWGG	1 cut(s)	32
NdeII	GATC	3 cut(s)	13, 110, 256
NlaIV	GGNNCC	2 cut(s)	66, 163
NmuCI	GTSAC	1 cut(s)	261
OliI	CACNNNNGTG	2 cut(s)	9, 199
PciSI	GCTCTTC	1 cut(s)	237
PfeI	GAWTC	1 cut(s)	230
PkrI	GCNGC	1 cut(s)	187
Psp6I	CCWGG	1 cut(s)	30
PspEI	GGTNACC	1 cut(s)	212
PspGI	CCWGG	1 cut(s)	30
PspN4I	GGNNCC	2 cut(s)	66, 163
PsuI	RGATCY	1 cut(s)	256
RseI	CAYNNNNRTG	2 cut(s)	9, 199
SapI	GCTCTTC	1 cut(s)	237
SaqAI	TTAA	2 cut(s)	80, 129
SatI	GCNGC	1 cut(s)	186
Sau3AI	GATC	3 cut(s)	13, 110, 256
ScrFI	CCNGG	1 cut(s)	32
SetI	ASST	4 cut(s)	135, 163, 219, 280
SfaNI	GCATC	1 cut(s)	132
SmiMI	CAYNNNNRTG	2 cut(s)	9, 199
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
SsiI	CCGC	1 cut(s)	186
SspMI	CTAG	1 cut(s)	239
StyD4I	CCNGG	1 cut(s)	30
StyI	CCWWGG	1 cut(s)	137
TaaI	ACNGT	1 cut(s)	8
TaqI	TCGA	1 cut(s)	109
TauI	GCSGC	1 cut(s)	188
TfiI	GAWTC	1 cut(s)	230
Tru1I	TTAA	2 cut(s)	80, 129
Tru9I	TTAA	2 cut(s)	80, 129
TseFI	GTSAC	1 cut(s)	261
Tsp45I	GTSAC	1 cut(s)	261
Vha464I	CTTAAG	1 cut(s)	128
XspI	CTAG	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.