Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8240197.1

Orthogroup ID

OG0007878

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 542

Gene Structure 542 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8240197.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

aaacaagttggagttttattgacacctccaactgggaaagaaagggcagatgaatggagaggactcgactctcagcgtcaattgcagataaaagttgaagatgtgcaaaggcctgcatgtgatgtggctatatcaggcttaggatggattagcatcgaacctatttgcagattattgagaagttctgattcaaattcagaaaaaactgcaggggaactgcatttagctgtgcatgtccccaagccagtcgaaatatttgttaggtctccaatcccagtgggcaagtctggagcagagtggtatcagtatcgggagttgaccgaaaaggaagaggaagaaagaccaaaatggcattattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0001505 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006109 GO:0006807 GO:0006809 GO:0006950 GO:0006970 GO:0006979 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009657 GO:0009668 GO:0009889 GO:0009987 GO:0010027 GO:0010035 GO:0010193 GO:0010322 GO:0010565 GO:0010675 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0017144 GO:0019216 GO:0019220 GO:0019222 GO:0019747 GO:0022613 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0034641 GO:0042133 GO:0042136 GO:0042221 GO:0042254 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046209 GO:0046677 GO:0046890 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051246 GO:0060255 GO:0061024 GO:0062012 GO:0065007 GO:0065008 GO:0071071 GO:0071840 GO:0072593 GO:0080090 GO:0099402 GO:1901700 GO:1903409 GO:1903725 GO:2001057

KEGG Pathways

Metabolic & Signaling

ko00220 ko00330 ko01100 ko01110 ko01130 ko04626 map00220 map00330 map01100 map01110 map01130 map04626

Pfam Domains

Protein Families

MMR_HSR1

Protein Analysis

119

Amino Acids

13.57

Weight (kDa)

5.96

Isoelectric Point (pI)

64.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007878)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47450 AT3G47450
fragaria_vesca	FvH4_7g25681 FvH4_7g27380 FvH4_7g27380 FvH4_7g28391
malus_domestica	MD07G1252900.v1.1
prunus_persica	Prupe.2G276500_v2.0.a1
pyrus_communis	pycom07g22550
rosa_chinensis	RchiOBHm_Chr1g0374211
rosa_laevigata	RLG00000026755
rosa_multiflora	Rmu_co8240197.1_g000001 Rmu_ssc0000007.1_g000041 Rmu_ssc0000450.1_g000005
rosa_roxburghii	Rroxscaffold_3G00227680 Rroxscaffold_4G00283640 Rroxscaffold_7G00194520
rosa_rugosa	Rorug01G0381400 Rorug01G0381500
rosa_samantha	Rh1AG392400 Rh1BG356400 Rh1CG369400 Rh1DG386900
rosa_wichuraiana	Rw1G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	193
AfiI	CCNNNNNNNGG	1 cut(s)	32
AgsI	TTSAA	2 cut(s)	98, 192
AluBI	AGCT	1 cut(s)	227
AluI	AGCT	1 cut(s)	227
Alw26I	GTCTC	1 cut(s)	270
AoxI	GGCC	1 cut(s)	110
ApoI	RAATTY	1 cut(s)	193
BccI	CCATC	1 cut(s)	138
BcoDI	GTCTC	1 cut(s)	270
BfmI	CTRYAG	1 cut(s)	207
BmrI	ACTGGG	2 cut(s)	42, 269
BmsI	GCATC	1 cut(s)	162
BmuI	ACTGGG	2 cut(s)	42, 269
BpmI	CTGGAG	1 cut(s)	309
Bpu10I	CCTNAGC	1 cut(s)	139
BsaBI	GATNNNNATC	1 cut(s)	152
BsaI	GGTCTC	1 cut(s)	270
Bsc4I	CCNNNNNNNGG	1 cut(s)	32
Bse1I	ACTGG	3 cut(s)	37, 245, 275
Bse8I	GATNNNNATC	1 cut(s)	152
BseGI	GGATG	1 cut(s)	149
BseJI	GATNNNNATC	1 cut(s)	152
BseLI	CCNNNNNNNGG	1 cut(s)	32
BseMII	CTCAG	1 cut(s)	86
BseNI	ACTGG	3 cut(s)	37, 245, 275
BshFI	GGCC	1 cut(s)	112
BslFI	GGGAC	1 cut(s)	221
BslI	CCNNNNNNNGG	1 cut(s)	32
BsmAI	GTCTC	1 cut(s)	270
BsmFI	GGGAC	1 cut(s)	221
BsnI	GGCC	1 cut(s)	112
Bso31I	GGTCTC	1 cut(s)	270
BspANI	GGCC	1 cut(s)	112
BspCNI	CTCAG	1 cut(s)	85
BspMAI	CTGCAG	1 cut(s)	211
BspTNI	GGTCTC	1 cut(s)	270
BsrI	ACTGG	3 cut(s)	37, 245, 275
Bst6I	CTCTTC	1 cut(s)	324
BstC8I	GCNNGC	1 cut(s)	114
BstDEI	CTNAG	2 cut(s)	72, 139
BstF5I	GGATG	1 cut(s)	149
BstMAI	GTCTC	1 cut(s)	270
BstMWI	GCNNNNNNNGC	1 cut(s)	82
BstNSI	RCATGY	2 cut(s)	120, 236
BstSFI	CTRYAG	1 cut(s)	207
BsuRI	GGCC	1 cut(s)	112
BtsCI	GGATG	1 cut(s)	149
BtsIMutI	CAGTG	1 cut(s)	282
Cac8I	GCNNGC	1 cut(s)	114
CseI	GACGC	1 cut(s)	65
CspCI	CAANNNNNGTGG	2 cut(s)	258, 293
CviAII	CATG	2 cut(s)	117, 233
CviJI	RGCY	5 cut(s)	112, 128, 138, 227, 244
CviKI_1	RGCY	5 cut(s)	112, 128, 138, 227, 244
DdeI	CTNAG	2 cut(s)	72, 139
Eam1104I	CTCTTC	1 cut(s)	324
EarI	CTCTTC	1 cut(s)	324
Eco147I	AGGCCT	1 cut(s)	112
Eco31I	GGTCTC	1 cut(s)	270
FaeI	CATG	2 cut(s)	120, 236
FaiI	YATR	3 cut(s)	118, 131, 234
FaqI	GGGAC	1 cut(s)	221
FatI	CATG	2 cut(s)	116, 232
FokI	GGATG	1 cut(s)	156
GsuI	CTGGAG	1 cut(s)	309
HaeIII	GGCC	1 cut(s)	112
HgaI	GACGC	1 cut(s)	65
Hin1II	CATG	2 cut(s)	120, 236
HincII	GTYRAC	1 cut(s)	318
HindII	GTYRAC	1 cut(s)	318
HinfI	GANTC	3 cut(s)	63, 68, 188
Hpy166II	GTNNAC	1 cut(s)	318
Hpy188I	TCNGA	2 cut(s)	187, 199
Hpy188III	TCNNGA	2 cut(s)	288, 311
Hpy8I	GTNNAC	1 cut(s)	318
HpyCH4V	TGCA	7 cut(s)	85, 106, 116, 168, 209, 220, 232
HpyF10VI	GCNNNNNNNGC	1 cut(s)	82
HpyF3I	CTNAG	2 cut(s)	72, 139
Hsp92II	CATG	2 cut(s)	120, 236
LmnI	GCTCC	1 cut(s)	290
LpnPI	CCDG	7 cut(s)	18, 120, 126, 195, 258, 273, 288
LweI	GCATC	1 cut(s)	162
MboII	GAAGA	3 cut(s)	110, 341, 347
MfeI	CAATTG	1 cut(s)	80
MluCI	AATT	2 cut(s)	80, 193
MlyI	GAGTC	2 cut(s)	57, 62
MmeI	TCCRAC	1 cut(s)	53
MnlI	CCTC	3 cut(s)	36, 53, 325
MunI	CAATTG	1 cut(s)	80
MwoI	GCNNNNNNNGC	1 cut(s)	82
NlaIII	CATG	2 cut(s)	120, 236
NspI	RCATGY	2 cut(s)	120, 236
PceI	AGGCCT	1 cut(s)	112
PfeI	GAWTC	1 cut(s)	188
PleI	GAGTC	2 cut(s)	57, 62
PpsI	GAGTC	2 cut(s)	57, 62
PstI	CTGCAG	1 cut(s)	211
SchI	GAGTC	2 cut(s)	57, 62
SetI	ASST	4 cut(s)	28, 163, 229, 266
SfaNI	GCATC	1 cut(s)	162
SfcI	CTRYAG	1 cut(s)	207
Sse9I	AATT	2 cut(s)	80, 193
SseBI	AGGCCT	1 cut(s)	112
SspI	AATATT	1 cut(s)	255
StuI	AGGCCT	1 cut(s)	112
TaqI	TCGA	3 cut(s)	66, 156, 249
TaqII	GACCGA	1 cut(s)	335
TasI	AATT	2 cut(s)	80, 193
TfiI	GAWTC	1 cut(s)	188
TscAI	CASTG	1 cut(s)	282
TspDTI	ATGAA	1 cut(s)	66
TspRI	CASTG	1 cut(s)	282
XapI	RAATTY	1 cut(s)	193
XceI	RCATGY	2 cut(s)	120, 236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.