Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0007878

Physical Location & Seq

Genomic Coordinates Reverse (-)

36441198 .. 36441936

Gene Structure 739 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00194520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGCGGTGATGGTGCCCAAAACATTCTCCTCCTTCCTTTCTCCCTTCACCTTCACACTCCCGAACACCAACCTCTTCAACCTCCACAACAGACCCATTCTCATCCTCTCGCAGATCTCGTGCCCACCAAAAACCACCCCTCTCGGAGCCCCATTACCTAAACGCAAAGGCACCGGAGCCATCGCACCAACCCCCGGTGACCACTTCCTCGAAAACCGCCGCTCCTTCGACGCCGATAAGCTTTTGCTCAAGGAGAAGAAGAAGAAGGAATCCAAGGGCTGTGAAGATGCAAGGACGCCCGAGACCTCCCAAAACGAGGAAGACAGAGAACAAAGGCATCATTTCAAGAGAGTTTTGGTGACCTCTCGAACGCAGTTGAACAGCTTGGCGTCTTTGTTGTCCGACTCGATGCATACATGGGTGGAGTGGATGGCGTGTTCGCAGCATCGTCCGAACAATGGGGAGGCACACCGCTTCTATAAATTGGGGCGTGATCGGAAGATCGTGGGTGTTTGGTATGACATTGATGTTCGATTGCAAGCGCGACCGAAGTTGATCGAATTCCGGAGTTCCAAGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0001505 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006109 GO:0006807 GO:0006809 GO:0006950 GO:0006970 GO:0006979 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009657 GO:0009668 GO:0009889 GO:0009987 GO:0010027 GO:0010035 GO:0010193 GO:0010322 GO:0010565 GO:0010675 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0017144 GO:0019216 GO:0019220 GO:0019222 GO:0019747 GO:0022613 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0034641 GO:0042133 GO:0042136 GO:0042221 GO:0042254 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046209 GO:0046677 GO:0046890 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051174 GO:0051246 GO:0060255 GO:0061024 GO:0062012 GO:0065007 GO:0065008 GO:0071071 GO:0071840 GO:0072593 GO:0080090 GO:0099402 GO:1901700 GO:1903409 GO:1903725 GO:2001057

KEGG Pathways

Metabolic & Signaling

ko00220 ko00330 ko01100 ko01110 ko01130 ko04626 map00220 map00330 map01100 map01110 map01130 map04626

Pfam Domains

Protein Families

MMR_HSR1

Protein Analysis

193

Amino Acids

22.21

Weight (kDa)

10.01

Isoelectric Point (pI)

56.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007878)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47450 AT3G47450
fragaria_vesca	FvH4_7g25681 FvH4_7g27380 FvH4_7g27380 FvH4_7g28391
malus_domestica	MD07G1252900.v1.1
prunus_persica	Prupe.2G276500_v2.0.a1
pyrus_communis	pycom07g22550
rosa_chinensis	RchiOBHm_Chr1g0374211
rosa_laevigata	RLG00000026755
rosa_multiflora	Rmu_co8240197.1_g000001 Rmu_ssc0000007.1_g000041 Rmu_ssc0000450.1_g000005
rosa_roxburghii	Rroxscaffold_3G00227680 Rroxscaffold_4G00283640 Rroxscaffold_7G00194520
rosa_rugosa	Rorug01G0381400 Rorug01G0381500
rosa_samantha	Rh1AG392400 Rh1BG356400 Rh1CG369400 Rh1DG386900
rosa_wichuraiana	Rw1G034330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	13, 170
AccBSI	CCGCTC	1 cut(s)	222
AccII	CGCG	1 cut(s)	544
AccIII	TCCGGA	1 cut(s)	564
AciI	CCGC	4 cut(s)	5, 217, 220, 472
AcsI	RAATTY	1 cut(s)	560
AcyI	GRCGYC	3 cut(s)	231, 296, 389
AfiI	CCNNNNNNNGG	3 cut(s)	194, 316, 458
AgsI	TTSAA	3 cut(s)	79, 346, 379
AloI	GAACNNNNNNTCC	2 cut(s)	421, 453
AluBI	AGCT	2 cut(s)	241, 384
AluI	AGCT	2 cut(s)	241, 384
Alw26I	GTCTC	1 cut(s)	296
Ama87I	CYCGRG	1 cut(s)	299
Aor13HI	TCCGGA	1 cut(s)	564
ApeKI	GCWGC	1 cut(s)	442
ApoI	RAATTY	1 cut(s)	560
AspLEI	GCGC	1 cut(s)	544
AsuC2I	CCSGG	1 cut(s)	195
AsuHPI	GGTGA	4 cut(s)	19, 40, 209, 370
AvaI	CYCGRG	1 cut(s)	299
BaeGI	GKGCMC	2 cut(s)	18, 125
BanI	GGYRCC	2 cut(s)	13, 170
BanII	GRGCYC	1 cut(s)	151
BauI	CACGAG	1 cut(s)	118
BbsI	GAAGAC	1 cut(s)	327
BbvI	GCAGC	1 cut(s)	454
BccI	CCATC	3 cut(s)	4, 188, 424
BcnI	CCSGG	1 cut(s)	195
BcoDI	GTCTC	1 cut(s)	296
BglII	AGATCT	1 cut(s)	114
BisI	GCNGC	2 cut(s)	220, 443
BlsI	GCNGC	2 cut(s)	221, 444
Bme1390I	CCNGG	1 cut(s)	195
BmeT110I	CYCGRG	1 cut(s)	299
BmiI	GGNNCC	4 cut(s)	15, 148, 172, 178
BmrFI	CCNGG	1 cut(s)	195
BmsI	GCATC	4 cut(s)	277, 346, 399, 454
BpiI	GAAGAC	1 cut(s)	327
BpuEI	CTTGAG	1 cut(s)	233
BpuMI	CCSGG	1 cut(s)	195
BsaHI	GRCGYC	3 cut(s)	231, 296, 389
BsaI	GGTCTC	1 cut(s)	296
BsaJI	CCNNGG	2 cut(s)	193, 273
BsaWI	WCCGGW	2 cut(s)	173, 564
BsaXI	ACNNNNNCTCC	2 cut(s)	206, 236
Bsc4I	CCNNNNNNNGG	3 cut(s)	194, 316, 458
BseAI	TCCGGA	1 cut(s)	564
BseDI	CCNNGG	2 cut(s)	193, 273
BseGI	GGATG	2 cut(s)	102, 435
BseLI	CCNNNNNNNGG	3 cut(s)	194, 316, 458
BseRI	GAGGAG	1 cut(s)	19
BseSI	GKGCMC	2 cut(s)	18, 125
BseXI	GCAGC	1 cut(s)	454
Bsh1236I	CGCG	1 cut(s)	544
Bsh1285I	CGRYCG	1 cut(s)	548
BshNI	GGYRCC	2 cut(s)	13, 170
BsiEI	CGRYCG	1 cut(s)	548
BsiHKCI	CYCGRG	1 cut(s)	299
BsiSI	CCGG	3 cut(s)	174, 195, 565
BslI	CCNNNNNNNGG	3 cut(s)	194, 316, 458
BsmAI	GTCTC	1 cut(s)	296
Bso31I	GGTCTC	1 cut(s)	296
BsoBI	CYCGRG	1 cut(s)	299
Bsp1286I	GDGCHC	3 cut(s)	18, 125, 151
Bsp13I	TCCGGA	1 cut(s)	564
Bsp143I	GATC	4 cut(s)	114, 493, 501, 555
BspACI	CCGC	4 cut(s)	5, 217, 220, 472
BspEI	TCCGGA	1 cut(s)	564
BspFNI	CGCG	1 cut(s)	544
BspLI	GGNNCC	4 cut(s)	15, 148, 172, 178
BspT107I	GGYRCC	2 cut(s)	13, 170
BspTNI	GGTCTC	1 cut(s)	296
BsrBI	CCGCTC	1 cut(s)	222
BssECI	CCNNGG	2 cut(s)	193, 273
BssMI	GATC	4 cut(s)	114, 493, 501, 555
BssNI	GRCGYC	3 cut(s)	231, 296, 389
BssSI	CACGAG	1 cut(s)	118
BssT1I	CCWWGG	1 cut(s)	273
Bst2BI	CACGAG	1 cut(s)	118
Bst6I	CTCTTC	1 cut(s)	80
BstACI	GRCGYC	3 cut(s)	231, 296, 389
BstC8I	GCNNGC	1 cut(s)	540
BstEII	GGTNACC	2 cut(s)	197, 358
BstF5I	GGATG	2 cut(s)	102, 435
BstFNI	CGCG	1 cut(s)	544
BstHHI	GCGC	1 cut(s)	544
BstKTI	GATC	4 cut(s)	117, 496, 504, 558
BstMAI	GTCTC	1 cut(s)	296
BstMBI	GATC	4 cut(s)	114, 493, 501, 555
BstMCI	CGRYCG	1 cut(s)	548
BstPI	GGTNACC	2 cut(s)	197, 358
BstSCI	CCNGG	1 cut(s)	193
BstSLI	GKGCMC	2 cut(s)	18, 125
BstUI	CGCG	1 cut(s)	544
BstV1I	GCAGC	1 cut(s)	454
BstV2I	GAAGAC	1 cut(s)	327
BstX2I	RGATCY	1 cut(s)	114
BstYI	RGATCY	1 cut(s)	114
BtgZI	GCGATG	1 cut(s)	166
BtsCI	GGATG	2 cut(s)	102, 435
Cac8I	GCNNGC	1 cut(s)	540
CfoI	GCGC	1 cut(s)	544
CseI	GACGC	3 cut(s)	239, 304, 378
CviAII	CATG	1 cut(s)	417
CviJI	RGCY	5 cut(s)	149, 179, 241, 279, 384
CviKI_1	RGCY	5 cut(s)	149, 179, 241, 279, 384
DpnI	GATC	4 cut(s)	116, 495, 503, 557
DpnII	GATC	4 cut(s)	114, 493, 501, 555
Eam1104I	CTCTTC	1 cut(s)	80
EarI	CTCTTC	1 cut(s)	80
Eco130I	CCWWGG	1 cut(s)	273
Eco24I	GRGCYC	1 cut(s)	151
Eco31I	GGTCTC	1 cut(s)	296
Eco88I	CYCGRG	1 cut(s)	299
Eco91I	GGTNACC	2 cut(s)	197, 358
EcoO65I	GGTNACC	2 cut(s)	197, 358
EcoRI	GAATTC	1 cut(s)	560
EcoT14I	CCWWGG	1 cut(s)	273
EcoT22I	ATGCAT	1 cut(s)	414
EcoT38I	GRGCYC	1 cut(s)	151
ErhI	CCWWGG	1 cut(s)	273
FaeI	CATG	1 cut(s)	420
FaiI	YATR	4 cut(s)	414, 418, 480, 519
FatI	CATG	1 cut(s)	416
Fnu4HI	GCNGC	2 cut(s)	220, 443
FokI	GGATG	2 cut(s)	89, 442
FriOI	GRGCYC	1 cut(s)	151
Fsp4HI	GCNGC	2 cut(s)	220, 443
GlaI	GCGC	1 cut(s)	543
GluI	GCNGC	2 cut(s)	220, 443
HapII	CCGG	3 cut(s)	174, 195, 565
HgaI	GACGC	3 cut(s)	239, 304, 378
HhaI	GCGC	1 cut(s)	544
Hin1I	GRCGYC	3 cut(s)	231, 296, 389
Hin1II	CATG	1 cut(s)	420
Hin6I	GCGC	1 cut(s)	542
HinP1I	GCGC	1 cut(s)	542
HindIII	AAGCTT	1 cut(s)	239
HinfI	GANTC	2 cut(s)	269, 404
HpaII	CCGG	3 cut(s)	174, 195, 565
HphI	GGTGA	4 cut(s)	19, 40, 209, 370
Hpy188I	TCNGA	4 cut(s)	146, 403, 453, 498
Hpy188III	TCNNGA	4 cut(s)	61, 346, 366, 565
Hpy99I	CGWCG	1 cut(s)	233
HpyAV	CCTTC	5 cut(s)	43, 55, 61, 235, 259
HpyCH4V	TGCA	3 cut(s)	290, 412, 538
Hsp92I	GRCGYC	3 cut(s)	231, 296, 389
Hsp92II	CATG	1 cut(s)	420
HspAI	GCGC	1 cut(s)	542
Kpn2I	TCCGGA	1 cut(s)	564
Kzo9I	GATC	4 cut(s)	114, 493, 501, 555
LmnI	GCTCC	3 cut(s)	146, 176, 227
LpnPI	CCDG	3 cut(s)	187, 208, 578
Lsp1109I	GCAGC	1 cut(s)	454
LweI	GCATC	4 cut(s)	277, 346, 399, 454
MaeIII	GTNAC	2 cut(s)	197, 358
MalI	GATC	4 cut(s)	116, 495, 503, 557
MbiI	CCGCTC	1 cut(s)	222
MboI	GATC	4 cut(s)	114, 493, 501, 555
MboII	GAAGA	7 cut(s)	67, 268, 271, 274, 296, 332, 511
MflI	RGATCY	1 cut(s)	114
MhlI	GDGCHC	3 cut(s)	18, 125, 151
MluCI	AATT	2 cut(s)	482, 560
MlyI	GAGTC	1 cut(s)	398
MmeI	TCCRAC	1 cut(s)	426
Mph1103I	ATGCAT	1 cut(s)	414
MroI	TCCGGA	1 cut(s)	564
MspI	CCGG	3 cut(s)	174, 195, 565
MspR9I	CCNGG	1 cut(s)	195
MvnI	CGCG	1 cut(s)	544
NciI	CCSGG	1 cut(s)	195
NdeII	GATC	4 cut(s)	114, 493, 501, 555
NlaIII	CATG	1 cut(s)	420
NlaIV	GGNNCC	4 cut(s)	15, 148, 172, 178
NmuCI	GTSAC	2 cut(s)	197, 358
NsiI	ATGCAT	1 cut(s)	414
PcsI	WCGNNNNNNNCGW	1 cut(s)	116
PfeI	GAWTC	1 cut(s)	269
PkrI	GCNGC	2 cut(s)	221, 444
PleI	GAGTC	1 cut(s)	398
PpsI	GAGTC	1 cut(s)	398
PspEI	GGTNACC	2 cut(s)	197, 358
PspN4I	GGNNCC	4 cut(s)	15, 148, 172, 178
PsuI	RGATCY	1 cut(s)	114
SatI	GCNGC	2 cut(s)	220, 443
Sau3AI	GATC	4 cut(s)	114, 493, 501, 555
SchI	GAGTC	1 cut(s)	398
ScrFI	CCNGG	1 cut(s)	195
SduI	GDGCHC	3 cut(s)	18, 125, 151
SetI	ASST	9 cut(s)	53, 75, 84, 160, 243, 308, 365, 386, 581
SfaNI	GCATC	4 cut(s)	277, 346, 399, 454
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
Sse9I	AATT	2 cut(s)	482, 560
SsiI	CCGC	4 cut(s)	5, 217, 220, 472
StyD4I	CCNGG	1 cut(s)	193
StyI	CCWWGG	1 cut(s)	273
TaqI	TCGA	6 cut(s)	210, 228, 367, 407, 532, 558
TaqII	GACCGA	1 cut(s)	562
TasI	AATT	2 cut(s)	482, 560
TauI	GCSGC	1 cut(s)	222
TfiI	GAWTC	1 cut(s)	269
TseFI	GTSAC	2 cut(s)	197, 358
TseI	GCWGC	1 cut(s)	442
Tsp45I	GTSAC	2 cut(s)	197, 358
XapI	RAATTY	1 cut(s)	560
Zsp2I	ATGCAT	1 cut(s)	414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.