Rh1AG392400

NO-associated protein 1, chloroplastic

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Reverse (-)
62118685 .. 62122437
3753 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG392400.1

Sequence Viewer

Length: 1026 bp
ATGGCGCCTAAAACCCTCTCCTCCTTCCTCTCTCCCTTCACCTTCACACTCCCCAACCCCAAGCTCCTCAACCTCAACCTCCACCCCAACCCCACTCTCATCCTCTGCCGATTCTCTCAGCCCCACCAGAAACCACCCCTCTCGGAGCCCCAGTTACCCCAACCCGAAGGCACCGGAGCCGCTGCACCCACCCCCGGCGACCGTTTCCTCGAAAGCCGCCGCTCCTTCGACGCGGCTAAGATCTTGCTCAAGGAAAAGAAGAAGAAGCGGCTCAAAGAGAAGCCCTTGAAGCTTTCCACCGCCGTCGCTTGCTGTTACGGTTGCGGAGCTCCGTTACAGACTTCCGAGCCCGACGCCCCGGGTTATTCTGACCCGGAGACCTATGCATTGAAGAAGAAGCACCACCAGCTTAGAACTGTTATATGTGGAAGGTGCAAGCTTTTGTCCCATGGCCACATGATAACTGCTGTGGGTGGGAATGGTGGTTATTCTGGCGGGAAGCAGTTCATCATGGCGGAACAGCTTCGGGAGAAGCTCTCGCATTTGCGCTACGAGAGAGCGTTGATAGTTAAATTGGTTCTCCCTGAAACACGTTTAACATTTTATGGGCCGAAGAGTCTTCAGATTCATATGGTACCCACTGATGAGGCGGATGAATTTTACCAGAAACAAGTTGGAGTTTTATTGACACCTCCAACTGGGAAAGAAAGGGCAGATGAATGGAGAGGACTCGACTCTCAGCGTCAATTGCAGATAAAAGTTGAAGATGTGCAAAAGCCTGCATGTGATGTGGCTATATCAGGCTTAGGATGGATTAGCATCGAACCTATTTGCAGATTATTGAGAAGTTCTGATTCAAATTCAGAAAAAACTGCAGGGGAACTGCATTTAGCTGTGCATGTCCCCAAGCCAGTCGAAATATTTGTTAGGTCTCCAATCCCAGTGGGCAAGTCTGGAGCAGAGTGGTATCAGTATCGGGAGTTGACCGAAAAGGAAGAGGAAGAAAGACCAAAATGGCATTATTGA

Protein Analysis

341

Amino Acids

38.23

Weight (kDa)

9.11

Isoelectric Point (pI)

52.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YqeH-like_C PF21516 198 - 275 2.5e-11 YqeH-like, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 634
AccB1I GGYRCC 3 cut(s) 4, 170, 634
AccBSI CCGCTC 1 cut(s) 222
AccII CGCG 1 cut(s) 233
AcoI YGGCCR 1 cut(s) 451
AcsI RAATTY 2 cut(s) 656, 859
AcuI CTGAAG 1 cut(s) 605
AcyI GRCGYC 2 cut(s) 5, 354
AfaI GTAC 1 cut(s) 636
AfiI CCNNNNNNNGG 2 cut(s) 194, 698
AflIII ACRYGT 1 cut(s) 590
AgsI TTSAA 4 cut(s) 289, 391, 764, 858
AluBI AGCT 8 cut(s) 64, 292, 329, 409, 439, 523, 535, 893
AluI AGCT 8 cut(s) 64, 292, 329, 409, 439, 523, 535, 893
Alw21I GWGCWC 1 cut(s) 331
Alw26I GTCTC 2 cut(s) 371, 936
Ama87I CYCGRG 1 cut(s) 358
AoxI GGCC 2 cut(s) 451, 608
ApeKI GCWGC 1 cut(s) 182
ApoI RAATTY 2 cut(s) 656, 859
Asp700I GAANNNNTTC 2 cut(s) 503, 522
Asp718I GGTACC 1 cut(s) 634
AspLEI GCGC 2 cut(s) 7, 549
AspS9I GGNCC 1 cut(s) 608
AsuC2I CCSGG 4 cut(s) 195, 359, 360, 374
AsuHPI GGTGA 1 cut(s) 31
AvaI CYCGRG 1 cut(s) 358
BalI TGGCCA 1 cut(s) 453
BanI GGYRCC 3 cut(s) 4, 170, 634
BanII GRGCYC 3 cut(s) 150, 331, 351
BbsI GAAGAC 1 cut(s) 611
Bbv12I GWGCWC 1 cut(s) 331
BbvI GCAGC 1 cut(s) 169
BccI CCATC 1 cut(s) 804
BceAI ACGGC 1 cut(s) 287
BcnI CCSGG 4 cut(s) 195, 359, 360, 374
BcoDI GTCTC 2 cut(s) 371, 936
BfmI CTRYAG 1 cut(s) 873
BfoI RGCGCY 1 cut(s) 8
BglII AGATCT 1 cut(s) 240
BisI GCNGC 6 cut(s) 180, 183, 217, 220, 234, 269
BlsI GCNGC 6 cut(s) 181, 184, 218, 221, 235, 270
Bme1390I CCNGG 4 cut(s) 195, 359, 360, 374
BmeT110I CYCGRG 1 cut(s) 358
BmgT120I GGNCC 1 cut(s) 608
BmiI GGNNCC 5 cut(s) 6, 147, 172, 178, 636
BmrFI CCNGG 4 cut(s) 195, 359, 360, 374
BmrI ACTGGG 3 cut(s) 145, 708, 935
BmsI GCATC 1 cut(s) 828
BmuI ACTGGG 3 cut(s) 145, 708, 935
BpiI GAAGAC 1 cut(s) 611
BplI GAGNNNNNCTC 2 cut(s) 521, 553
BpmI CTGGAG 1 cut(s) 975
Bpu10I CCTNAGC 1 cut(s) 805
BpuEI CTTGAG 1 cut(s) 233
BpuMI CCSGG 4 cut(s) 195, 359, 360, 374
BsaBI GATNNNNATC 1 cut(s) 818
BsaHI GRCGYC 2 cut(s) 5, 354
BsaI GGTCTC 2 cut(s) 371, 936
BsaJI CCNNGG 4 cut(s) 193, 357, 358, 448
BsaWI WCCGGW 1 cut(s) 173
BsaXI ACNNNNNCTCC 2 cut(s) 137, 167
Bsc4I CCNNNNNNNGG 2 cut(s) 194, 698
Bse1I ACTGG 4 cut(s) 151, 703, 911, 941
Bse8I GATNNNNATC 1 cut(s) 818
BseDI CCNNGG 4 cut(s) 193, 357, 358, 448
BseGI GGATG 3 cut(s) 99, 658, 815
BseJI GATNNNNATC 1 cut(s) 818
BseLI CCNNNNNNNGG 2 cut(s) 194, 698
BseMII CTCAG 2 cut(s) 131, 752
BseNI ACTGG 4 cut(s) 151, 703, 911, 941
BseRI GAGGAG 2 cut(s) 10, 56
BseXI GCAGC 1 cut(s) 169
BsgI GTGCAG 1 cut(s) 168
Bsh1236I CGCG 1 cut(s) 233
Bsh1285I CGRYCG 1 cut(s) 202
BshFI GGCC 2 cut(s) 453, 610
BshNI GGYRCC 3 cut(s) 4, 170, 634
BsiEI CGRYCG 1 cut(s) 202
BsiHKAI GWGCWC 1 cut(s) 331
BsiHKCI CYCGRG 1 cut(s) 358
BsiSI CCGG 4 cut(s) 174, 195, 359, 374
BslFI GGGAC 2 cut(s) 430, 887
BslI CCNNNNNNNGG 2 cut(s) 194, 698
BsmAI GTCTC 2 cut(s) 371, 936
BsmFI GGGAC 2 cut(s) 430, 887
BsnI GGCC 2 cut(s) 453, 610
Bso31I GGTCTC 2 cut(s) 371, 936
BsoBI CYCGRG 1 cut(s) 358
Bsp1286I GDGCHC 3 cut(s) 150, 331, 351
Bsp143I GATC 1 cut(s) 240
Bsp19I CCATGG 1 cut(s) 448
BspANI GGCC 2 cut(s) 453, 610
BspCNI CTCAG 2 cut(s) 130, 751
BspFNI CGCG 1 cut(s) 233
BspLI GGNNCC 5 cut(s) 6, 147, 172, 178, 636
BspMAI CTGCAG 1 cut(s) 877
BspT107I GGYRCC 3 cut(s) 4, 170, 634
BspTNI GGTCTC 2 cut(s) 371, 936
BsrBI CCGCTC 1 cut(s) 222
BsrI ACTGG 4 cut(s) 151, 703, 911, 941
BssECI CCNNGG 4 cut(s) 193, 357, 358, 448
BssMI GATC 1 cut(s) 240
BssNI GRCGYC 2 cut(s) 5, 354
BssT1I CCWWGG 1 cut(s) 448
Bst4CI ACNGT 3 cut(s) 203, 320, 418
Bst6I CTCTTC 2 cut(s) 608, 990
BstACI GRCGYC 2 cut(s) 5, 354
BstC8I GCNNGC 3 cut(s) 310, 437, 780
BstDEI CTNAG 5 cut(s) 117, 237, 410, 738, 805
BstDSI CCRYGG 1 cut(s) 448
BstF5I GGATG 3 cut(s) 99, 658, 815
BstFNI CGCG 1 cut(s) 233
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 2 cut(s) 7, 549
BstKTI GATC 1 cut(s) 243
BstMAI GTCTC 2 cut(s) 371, 936
BstMBI GATC 1 cut(s) 240
BstMCI CGRYCG 1 cut(s) 202
BstMWI GCNNNNNNNGC 3 cut(s) 289, 406, 748
BstNSI RCATGY 2 cut(s) 786, 902
BstSCI CCNGG 4 cut(s) 193, 357, 358, 372
BstSFI CTRYAG 1 cut(s) 873
BstUI CGCG 1 cut(s) 233
BstV1I GCAGC 1 cut(s) 169
BstV2I GAAGAC 1 cut(s) 611
BstX2I RGATCY 1 cut(s) 240
BstYI RGATCY 1 cut(s) 240
BsuRI GGCC 2 cut(s) 453, 610
BtgI CCRYGG 1 cut(s) 448
BtsCI GGATG 3 cut(s) 99, 658, 815
BtsIMutI CAGTG 2 cut(s) 639, 948
Cac8I GCNNGC 3 cut(s) 310, 437, 780
CfoI GCGC 2 cut(s) 7, 549
Cfr13I GGNCC 1 cut(s) 608
Cfr9I CCCGGG 1 cut(s) 358
CseI GACGC 3 cut(s) 239, 362, 731
Csp6I GTAC 1 cut(s) 635
CspCI CAANNNNNGTGG 2 cut(s) 924, 959
CviAII CATG 5 cut(s) 449, 457, 511, 783, 899
CviQI GTAC 1 cut(s) 635
DdeI CTNAG 5 cut(s) 117, 237, 410, 738, 805
DinI GGCGCC 1 cut(s) 6
DpnI GATC 1 cut(s) 242
DpnII GATC 1 cut(s) 240
EaeI YGGCCR 1 cut(s) 451
Eam1104I CTCTTC 2 cut(s) 608, 990
EarI CTCTTC 2 cut(s) 608, 990
EciI GGCGGA 2 cut(s) 530, 665
Ecl136II GAGCTC 1 cut(s) 329
Eco130I CCWWGG 1 cut(s) 448
Eco24I GRGCYC 3 cut(s) 150, 331, 351
Eco31I GGTCTC 2 cut(s) 371, 936
Eco53kI GAGCTC 1 cut(s) 329
Eco57I CTGAAG 1 cut(s) 605
Eco88I CYCGRG 1 cut(s) 358
EcoICRI GAGCTC 1 cut(s) 329
EcoT14I CCWWGG 1 cut(s) 448
EcoT22I ATGCAT 1 cut(s) 388
EcoT38I GRGCYC 3 cut(s) 150, 331, 351
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 448
FaeI CATG 5 cut(s) 452, 460, 514, 786, 902
FaqI GGGAC 2 cut(s) 430, 887
FatI CATG 5 cut(s) 448, 456, 510, 782, 898
FauI CCCGC 1 cut(s) 488
FauNDI CATATG 1 cut(s) 630
Fnu4HI GCNGC 6 cut(s) 180, 183, 217, 220, 234, 269
FokI GGATG 3 cut(s) 86, 665, 822
FriOI GRGCYC 3 cut(s) 150, 331, 351
Fsp4HI GCNGC 6 cut(s) 180, 183, 217, 220, 234, 269
GlaI GCGC 2 cut(s) 6, 548
GluI GCNGC 6 cut(s) 180, 183, 217, 220, 234, 269
GsuI CTGGAG 1 cut(s) 975
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 2 cut(s) 453, 610
HapII CCGG 4 cut(s) 174, 195, 359, 374
HgaI GACGC 3 cut(s) 239, 362, 731
HhaI GCGC 2 cut(s) 7, 549
Hin1I GRCGYC 2 cut(s) 5, 354
Hin1II CATG 5 cut(s) 452, 460, 514, 786, 902
Hin6I GCGC 2 cut(s) 5, 547
HinP1I GCGC 2 cut(s) 5, 547
HincII GTYRAC 1 cut(s) 984
HindII GTYRAC 1 cut(s) 984
HindIII AAGCTT 2 cut(s) 290, 437
HinfI GANTC 6 cut(s) 111, 616, 625, 729, 734, 854
HpaII CCGG 4 cut(s) 174, 195, 359, 374
HphI GGTGA 1 cut(s) 31
Hpy166II GTNNAC 1 cut(s) 984
Hpy188I TCNGA 6 cut(s) 145, 346, 370, 624, 853, 865
Hpy188III TCNNGA 3 cut(s) 527, 954, 977
Hpy8I GTNNAC 1 cut(s) 984
Hpy99I CGWCG 3 cut(s) 233, 308, 356
HpyAV CCTTC 6 cut(s) 34, 46, 52, 161, 235, 423
HpyCH4III ACNGT 3 cut(s) 203, 320, 418
HpyCH4IV ACGT 1 cut(s) 592
HpyF10VI GCNNNNNNNGC 3 cut(s) 289, 406, 748
HpyF3I CTNAG 5 cut(s) 117, 237, 410, 738, 805
HpySE526I ACGT 1 cut(s) 592
Hsp92I GRCGYC 2 cut(s) 5, 354
Hsp92II CATG 5 cut(s) 452, 460, 514, 786, 902
HspAI GCGC 2 cut(s) 5, 547
KasI GGCGCC 1 cut(s) 4
KpnI GGTACC 1 cut(s) 638
Kzo9I GATC 1 cut(s) 240
LmnI GCTCC 7 cut(s) 69, 145, 176, 227, 326, 334, 956
Lsp1109I GCAGC 1 cut(s) 169
LweI GCATC 1 cut(s) 828
MaeII ACGT 1 cut(s) 592
MaeIII GTNAC 3 cut(s) 153, 314, 333
MalI GATC 1 cut(s) 242
MbiI CCGCTC 1 cut(s) 222
MboI GATC 1 cut(s) 240
MboII GAAGA 9 cut(s) 271, 274, 403, 406, 611, 625, 776, 1007, 1013
MfeI CAATTG 1 cut(s) 746
MflI RGATCY 1 cut(s) 240
MhlI GDGCHC 3 cut(s) 150, 331, 351
MlsI TGGCCA 1 cut(s) 453
MluCI AATT 4 cut(s) 572, 656, 746, 859
MluNI TGGCCA 1 cut(s) 453
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 3 cut(s) 625, 723, 728
MmeI TCCRAC 2 cut(s) 655, 719
Mox20I TGGCCA 1 cut(s) 453
Mph1103I ATGCAT 1 cut(s) 388
MroXI GAANNNNTTC 2 cut(s) 503, 522
MscI TGGCCA 1 cut(s) 453
MseI TTAA 2 cut(s) 570, 596
Msp20I TGGCCA 1 cut(s) 453
MspA1I CMGCKG 1 cut(s) 182
MspI CCGG 4 cut(s) 174, 195, 359, 374
MspR9I CCNGG 4 cut(s) 195, 359, 360, 374
MunI CAATTG 1 cut(s) 746
MvnI CGCG 1 cut(s) 233
MwoI GCNNNNNNNGC 3 cut(s) 289, 406, 748
NarI GGCGCC 1 cut(s) 5
NciI CCSGG 4 cut(s) 195, 359, 360, 374
NcoI CCATGG 1 cut(s) 448
NdeI CATATG 1 cut(s) 630
NdeII GATC 1 cut(s) 240
NlaIII CATG 5 cut(s) 452, 460, 514, 786, 902
NlaIV GGNNCC 5 cut(s) 6, 147, 172, 178, 636
NsiI ATGCAT 1 cut(s) 388
NspI RCATGY 2 cut(s) 786, 902
PdmI GAANNNNTTC 2 cut(s) 503, 522
PfeI GAWTC 3 cut(s) 111, 625, 854
PkrI GCNGC 6 cut(s) 181, 184, 218, 221, 235, 270
PleI GAGTC 3 cut(s) 624, 723, 728
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 3 cut(s) 624, 723, 728
Psp124BI GAGCTC 1 cut(s) 331
PspN4I GGNNCC 5 cut(s) 6, 147, 172, 178, 636
PspPI GGNCC 1 cut(s) 608
PstI CTGCAG 1 cut(s) 877
PsuI RGATCY 1 cut(s) 240
RsaI GTAC 1 cut(s) 636
RsaNI GTAC 1 cut(s) 635
SacI GAGCTC 1 cut(s) 331
SaqAI TTAA 2 cut(s) 570, 596
SatI GCNGC 6 cut(s) 180, 183, 217, 220, 234, 269
Sau3AI GATC 1 cut(s) 240
Sau96I GGNCC 1 cut(s) 608
SchI GAGTC 3 cut(s) 625, 723, 728
ScrFI CCNGG 4 cut(s) 195, 359, 360, 374
SduI GDGCHC 3 cut(s) 150, 331, 351
SfaNI GCATC 1 cut(s) 828
SfcI CTRYAG 1 cut(s) 873
SfoI GGCGCC 1 cut(s) 6
SmaI CCCGGG 1 cut(s) 360
SmlI CTYRAG 1 cut(s) 248
SmoI CTYRAG 1 cut(s) 248
Sse9I AATT 4 cut(s) 572, 656, 746, 859
SspDI GGCGCC 1 cut(s) 4
SspI AATATT 1 cut(s) 921
SstI GAGCTC 1 cut(s) 331
StyD4I CCNGG 4 cut(s) 193, 357, 358, 372
StyI CCWWGG 1 cut(s) 448
TaaI ACNGT 3 cut(s) 203, 320, 418
TaiI ACGT 1 cut(s) 595
TaqI TCGA 5 cut(s) 210, 228, 732, 822, 915
TaqII GACCGA 1 cut(s) 1001
TasI AATT 4 cut(s) 572, 656, 746, 859
TauI GCSGC 5 cut(s) 182, 219, 222, 236, 271
TfiI GAWTC 3 cut(s) 111, 625, 854
Tru1I TTAA 2 cut(s) 570, 596
Tru9I TTAA 2 cut(s) 570, 596
TscAI CASTG 2 cut(s) 646, 948
TseI GCWGC 1 cut(s) 182
TspDTI ATGAA 4 cut(s) 496, 617, 669, 732
TspGWI ACGGA 1 cut(s) 321
TspMI CCCGGG 1 cut(s) 358
TspRI CASTG 2 cut(s) 646, 948
XapI RAATTY 2 cut(s) 656, 859
XceI RCATGY 2 cut(s) 786, 902
XcmI CCANNNNNNNNNTGG 1 cut(s) 671
XmaI CCCGGG 1 cut(s) 358
XmnI GAANNNNTTC 2 cut(s) 503, 522
Zsp2I ATGCAT 1 cut(s) 388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.