Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0005995

Physical Location & Seq

Genomic Coordinates Reverse (-)

22567393 .. 22571482

Gene Structure 4090 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g31190.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGATATGCAAAAGTGGGATAAGGAATCTTATTGTTCAAGCGGGGAGGGTAGTAGGGTGCAGAAGAACTGGGGCGTATTTGAACAGCATTGGTAGGGTGTGCATGCAGGCCTCTTTGGGGAACCGCGGGTTTAAAACGAGTTTAAGGATGATGGTTGATTCTAGTAAACAAGGTTCCATTGTTGATGTCTTGTCGGAGAAAGATGAAGAGGGTGGATATATCAGTGGTGGCTGGAAAAGTGAAGGCGGAAAACTTAGCTGCGGCTATTCCAGTTTTAGGGGGAAAAGAGCCACCATGGAGGATTTTTATGATATAAAGACTTCCAATATTGATGGACAAACAGTCTGCCTGTTTGGAATTTTTGATGGTCATGGTGGTTCTCGTGCTGCTGAATATCTGAAGGAGCATCTATTTGAGAATCTCATGAAGCATCCAAACTTCATCACAGACACCAAGTTAGCTATTAGTGAATCATATCAGCAAACTGATGCAGCTTTTTTGGATTCTGAAAGGGATACATACCGTGATGACGGTTCTACTGCTTCAACAGCAGTGTTAGTGGGCAACCATCTATATGTTGCCAATGTTGGAGATTCTCGTACAGTAATATCAAAGGCAGGCAAAGCAATTCCTCTATCCGAGGATCATAAACCAAATCGAACTGATGAGAGGAAGAGAATTGAAAATGCTGGGGGCATTGTAATGTGGGCAGGAACTTGGAGGGTAGGAGGTGTTTTGGCTATGTCTCGGGCTTTTGGAAACCGCATGTTGAAGCAATTTGTTATCGCAGAACCTGAGATCCAGGAACAAGTGATAGACCAAGAATTTGAATTGCTGGTGCTTGCTAGTGATGGGCTGTGGGACGTGGTGCCAAATGAGGATGCCATTTCACTTGCCCGAACAGAAGAAGAACCTGAGGCAGCAGCTCGGAAGTTAACGGGAACCGCATTTGCCCGCGGCAGTGCCGACAATATAACATGCATTGTGGTGAGGTTTAACCATGAGAAAGCAGAGTCTACCGGGGCTAACCATGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008150 GO:0009846 GO:0009856 GO:0022414 GO:0032501 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0051704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

346

Amino Acids

37.72

Weight (kDa)

5.75

Isoelectric Point (pI)

33.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	87 - 325	5.4e-64	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53140 AT5G53140
fragaria_vesca	FvH4_7g31190
malus_domestica	MD01G1216600.v1.1 MD07G1286600.v1.1
prunus_persica	Prupe.2G308600_v2.0.a1 Prupe.2G308600_v2.0.a1 Prupe.2G308600_v2.0.a1 Prupe.2G308600_v2.0.a1 Prupe.2G308600_v2.0.a1 Prupe.2G308600_v2.0.a1 Prupe.2G308600_v2.0.a1 Prupe.2G308600_v2.0.a1
pyrus_communis	pycom07g25970
rosa_chinensis	RchiOBHm_Chr1g0380251
rosa_laevigata	RLG00000026315
rosa_multiflora	Rmu_sc0001232.1_g000029
rosa_roxburghii	Rroxscaffold_4G00279540
rosa_rugosa	Rorug01G0419300 Rorug01G0419400 Rorug01G0419500
rosa_samantha	Rh1AG444100 Rh1BG399200 Rh1CG412600 Rh1DG429700
rosa_wichuraiana	Rw1G038570 Rw1G038640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	868
AccI	GTMKAC	1 cut(s)	1016
AccII	CGCG	2 cut(s)	126, 957
AciI	CCGC	9 cut(s)	41, 124, 126, 246, 261, 763, 945, 955, 957
AclWI	GGATC	2 cut(s)	651, 793
AcsI	RAATTY	2 cut(s)	357, 824
AcuI	CTGAAG	1 cut(s)	419
AfaI	GTAC	1 cut(s)	601
AfiI	CCNNNNNNNGG	2 cut(s)	117, 276
AgsI	TTSAA	6 cut(s)	38, 82, 546, 683, 772, 830
AhdI	GACNNNNNGTC	1 cut(s)	341
AjiI	CACGTC	1 cut(s)	865
AjnI	CCWGG	1 cut(s)	801
AloI	GAACNNNNNNTCC	2 cut(s)	783, 815
AluBI	AGCT	4 cut(s)	258, 461, 494, 926
AluI	AGCT	4 cut(s)	258, 461, 494, 926
Alw26I	GTCTC	1 cut(s)	750
AlwI	GGATC	2 cut(s)	651, 793
AlwNI	CAGNNNCTG	1 cut(s)	794
Ama87I	CYCGRG	1 cut(s)	747
AoxI	GGCC	1 cut(s)	108
ApeKI	GCWGC	5 cut(s)	258, 386, 491, 920, 923
ApoI	RAATTY	2 cut(s)	357, 824
ArsI	GACNNNNNNTTYG	2 cut(s)	809, 841
AsuC2I	CCSGG	1 cut(s)	1021
AsuHPI	GGTGA	1 cut(s)	1000
AvaI	CYCGRG	1 cut(s)	747
AxyI	CCTNAGG	1 cut(s)	915
BanI	GGYRCC	1 cut(s)	868
BauI	CACGAG	1 cut(s)	381
BbvI	GCAGC	5 cut(s)	245, 373, 503, 932, 935
BccI	CCATC	5 cut(s)	145, 326, 359, 576, 845
BciT130I	CCWGG	1 cut(s)	803
BciVI	GTATCC	1 cut(s)	508
BcnI	CCSGG	1 cut(s)	1021
BcoDI	GTCTC	1 cut(s)	750
BfaI	CTAG	2 cut(s)	162, 846
BfuI	GTATCC	1 cut(s)	508
BisI	GCNGC	7 cut(s)	259, 262, 387, 492, 921, 924, 958
BlsI	GCNGC	7 cut(s)	260, 263, 388, 493, 922, 925, 959
Bme1390I	CCNGG	2 cut(s)	803, 1021
BmeRI	GACNNNNNGTC	1 cut(s)	341
BmeT110I	CYCGRG	1 cut(s)	747
BmgBI	CACGTC	1 cut(s)	865
BmiI	GGNNCC	4 cut(s)	122, 175, 870, 943
BmrFI	CCNGG	2 cut(s)	803, 1021
BmrI	ACTGGG	1 cut(s)	78
BmsI	GCATC	4 cut(s)	415, 439, 478, 871
BmuI	ACTGGG	1 cut(s)	78
BpuMI	CCSGG	1 cut(s)	1021
BsaJI	CCNNGG	5 cut(s)	124, 294, 639, 955, 1020
Bsc4I	CCNNNNNNNGG	2 cut(s)	117, 276
Bse1I	ACTGG	2 cut(s)	73, 270
Bse21I	CCTNAGG	1 cut(s)	915
BseBI	CCWGG	1 cut(s)	803
BseDI	CCNNGG	5 cut(s)	124, 294, 639, 955, 1020
BseGI	GGATG	3 cut(s)	153, 430, 886
BseLI	CCNNNNNNNGG	2 cut(s)	117, 276
BseMII	CTCAG	2 cut(s)	786, 906
BseNI	ACTGG	2 cut(s)	73, 270
BseXI	GCAGC	5 cut(s)	245, 373, 503, 932, 935
BseYI	CCCAGC	1 cut(s)	689
BsgI	GTGCAG	1 cut(s)	79
Bsh1236I	CGCG	2 cut(s)	126, 957
BshFI	GGCC	1 cut(s)	110
BshNI	GGYRCC	1 cut(s)	868
BsiHKCI	CYCGRG	1 cut(s)	747
BsiSI	CCGG	1 cut(s)	1020
BslFI	GGGAC	1 cut(s)	875
BslI	CCNNNNNNNGG	2 cut(s)	117, 276
BsmAI	GTCTC	1 cut(s)	750
BsmFI	GGGAC	1 cut(s)	875
BsnI	GGCC	1 cut(s)	110
BsoBI	CYCGRG	1 cut(s)	747
Bsp143I	GATC	2 cut(s)	643, 798
Bsp19I	CCATGG	1 cut(s)	294
BspACI	CCGC	9 cut(s)	41, 124, 126, 246, 261, 763, 945, 955, 957
BspANI	GGCC	1 cut(s)	110
BspCNI	CTCAG	2 cut(s)	787, 907
BspFNI	CGCG	2 cut(s)	126, 957
BspHI	TCATGA	1 cut(s)	423
BspLI	GGNNCC	4 cut(s)	122, 175, 870, 943
BspPI	GGATC	2 cut(s)	651, 793
BspT107I	GGYRCC	1 cut(s)	868
BsrI	ACTGG	2 cut(s)	73, 270
BssECI	CCNNGG	5 cut(s)	124, 294, 639, 955, 1020
BssMI	GATC	2 cut(s)	643, 798
BssSI	CACGAG	1 cut(s)	381
BssT1I	CCWWGG	1 cut(s)	294
Bst2BI	CACGAG	1 cut(s)	381
Bst2UI	CCWGG	1 cut(s)	803
Bst4CI	ACNGT	4 cut(s)	343, 524, 533, 604
Bst6I	CTCTTC	2 cut(s)	201, 668
BstC8I	GCNNGC	5 cut(s)	104, 108, 619, 843, 955
BstDEI	CTNAG	3 cut(s)	254, 795, 915
BstDSI	CCRYGG	3 cut(s)	124, 294, 955
BstF5I	GGATG	3 cut(s)	153, 430, 886
BstFNI	CGCG	2 cut(s)	126, 957
BstKTI	GATC	2 cut(s)	646, 801
BstMAI	GTCTC	1 cut(s)	750
BstMBI	GATC	2 cut(s)	643, 798
BstMWI	GCNNNNNNNGC	2 cut(s)	548, 623
BstNI	CCWGG	1 cut(s)	803
BstNSI	RCATGY	3 cut(s)	106, 769, 981
BstSCI	CCNGG	2 cut(s)	801, 1019
BstUI	CGCG	2 cut(s)	126, 957
BstV1I	GCAGC	5 cut(s)	245, 373, 503, 932, 935
BstX2I	RGATCY	1 cut(s)	798
BstYI	RGATCY	1 cut(s)	798
Bsu36I	CCTNAGG	1 cut(s)	915
BsuI	GTATCC	1 cut(s)	508
BsuRI	GGCC	1 cut(s)	110
BtgI	CCRYGG	3 cut(s)	124, 294, 955
BtrI	CACGTC	1 cut(s)	865
BtsCI	GGATG	3 cut(s)	153, 430, 886
BtsI	GCAGTG	2 cut(s)	558, 967
BtsIMutI	CAGTG	3 cut(s)	229, 558, 967
Cac8I	GCNNGC	5 cut(s)	104, 108, 619, 843, 955
CaiI	CAGNNNCTG	1 cut(s)	794
CciI	TCATGA	1 cut(s)	423
Cfr42I	CCGCGG	2 cut(s)	127, 958
Csp6I	GTAC	1 cut(s)	600
CviAII	CATG	8 cut(s)	103, 295, 371, 424, 766, 978, 1001, 1031
CviQI	GTAC	1 cut(s)	600
DdeI	CTNAG	3 cut(s)	254, 795, 915
DpnI	GATC	2 cut(s)	645, 800
DpnII	GATC	2 cut(s)	643, 798
DraI	TTTAAA	1 cut(s)	133
DriI	GACNNNNNGTC	1 cut(s)	341
Eam1104I	CTCTTC	2 cut(s)	201, 668
Eam1105I	GACNNNNNGTC	1 cut(s)	341
EarI	CTCTTC	2 cut(s)	201, 668
EciI	GGCGGA	1 cut(s)	261
Eco130I	CCWWGG	1 cut(s)	294
Eco147I	AGGCCT	1 cut(s)	110
Eco57I	CTGAAG	1 cut(s)	419
Eco81I	CCTNAGG	1 cut(s)	915
Eco88I	CYCGRG	1 cut(s)	747
EcoRII	CCWGG	1 cut(s)	801
EcoT14I	CCWWGG	1 cut(s)	294
EcoT22I	ATGCAT	1 cut(s)	983
ErhI	CCWWGG	1 cut(s)	294
FaeI	CATG	8 cut(s)	106, 298, 374, 427, 769, 981, 1004, 1034
FaqI	GGGAC	1 cut(s)	875
FatI	CATG	8 cut(s)	102, 294, 370, 423, 765, 977, 1000, 1030
FauI	CCCGC	3 cut(s)	34, 119, 962
FblI	GTMKAC	1 cut(s)	1016
Fnu4HI	GCNGC	7 cut(s)	259, 262, 387, 492, 921, 924, 958
FokI	GGATG	3 cut(s)	160, 417, 893
Fsp4HI	GCNGC	7 cut(s)	259, 262, 387, 492, 921, 924, 958
FspBI	CTAG	2 cut(s)	162, 846
GluI	GCNGC	7 cut(s)	259, 262, 387, 492, 921, 924, 958
GsaI	CCCAGC	1 cut(s)	693
HaeIII	GGCC	1 cut(s)	110
HapII	CCGG	1 cut(s)	1020
Hin1II	CATG	8 cut(s)	106, 298, 374, 427, 769, 981, 1004, 1034
HincII	GTYRAC	1 cut(s)	936
HindII	GTYRAC	1 cut(s)	936
HinfI	GANTC	7 cut(s)	25, 158, 418, 470, 503, 593, 1013
HpaI	GTTAAC	1 cut(s)	936
HpaII	CCGG	1 cut(s)	1020
HphI	GGTGA	1 cut(s)	1000
Hpy166II	GTNNAC	3 cut(s)	167, 936, 1017
Hpy188I	TCNGA	5 cut(s)	196, 399, 508, 640, 930
Hpy188III	TCNNGA	1 cut(s)	424
Hpy8I	GTNNAC	3 cut(s)	167, 936, 1017
HpyAV	CCTTC	2 cut(s)	236, 394
HpyCH4III	ACNGT	4 cut(s)	343, 524, 533, 604
HpyCH4IV	ACGT	1 cut(s)	864
HpyCH4V	TGCA	6 cut(s)	9, 60, 102, 106, 491, 981
HpyF10VI	GCNNNNNNNGC	2 cut(s)	548, 623
HpyF3I	CTNAG	3 cut(s)	254, 795, 915
HpySE526I	ACGT	1 cut(s)	864
Hsp92II	CATG	8 cut(s)	106, 298, 374, 427, 769, 981, 1004, 1034
KspAI	GTTAAC	1 cut(s)	936
KspI	CCGCGG	2 cut(s)	127, 958
Kzo9I	GATC	2 cut(s)	643, 798
LmnI	GCTCC	1 cut(s)	403
Lsp1109I	GCAGC	5 cut(s)	245, 373, 503, 932, 935
LweI	GCATC	4 cut(s)	415, 439, 478, 871
MaeI	CTAG	2 cut(s)	162, 846
MaeII	ACGT	1 cut(s)	864
MalI	GATC	2 cut(s)	645, 800
MboI	GATC	2 cut(s)	643, 798
MboII	GAAGA	5 cut(s)	75, 218, 685, 917, 920
MflI	RGATCY	1 cut(s)	798
MluCI	AATT	6 cut(s)	357, 627, 678, 776, 824, 830
MlyI	GAGTC	1 cut(s)	1022
MmeI	TCCRAC	2 cut(s)	174, 568
Mph1103I	ATGCAT	1 cut(s)	983
MseI	TTAA	4 cut(s)	132, 143, 935, 996
MslI	CAYNNNNRTG	3 cut(s)	573, 701, 986
MspA1I	CMGCKG	2 cut(s)	126, 957
MspI	CCGG	1 cut(s)	1020
MspR9I	CCNGG	2 cut(s)	803, 1021
MvaI	CCWGG	1 cut(s)	803
MvnI	CGCG	2 cut(s)	126, 957
MwoI	GCNNNNNNNGC	2 cut(s)	548, 623
NciI	CCSGG	1 cut(s)	1021
NcoI	CCATGG	1 cut(s)	294
NdeII	GATC	2 cut(s)	643, 798
NlaIII	CATG	8 cut(s)	106, 298, 374, 427, 769, 981, 1004, 1034
NlaIV	GGNNCC	4 cut(s)	122, 175, 870, 943
NsiI	ATGCAT	1 cut(s)	983
NspI	RCATGY	3 cut(s)	106, 769, 981
PaeI	GCATGC	1 cut(s)	106
PagI	TCATGA	1 cut(s)	423
PceI	AGGCCT	1 cut(s)	110
PfeI	GAWTC	6 cut(s)	25, 158, 418, 470, 503, 593
PfoI	TCCNGGA	1 cut(s)	801
PkrI	GCNGC	7 cut(s)	260, 263, 388, 493, 922, 925, 959
PleI	GAGTC	1 cut(s)	1021
PpsI	GAGTC	1 cut(s)	1021
Psp6I	CCWGG	1 cut(s)	801
PspFI	CCCAGC	1 cut(s)	689
PspGI	CCWGG	1 cut(s)	801
PspN4I	GGNNCC	4 cut(s)	122, 175, 870, 943
PsrI	GAACNNNNNNTAC	2 cut(s)	157, 189
PstNI	CAGNNNCTG	1 cut(s)	794
PsuI	RGATCY	1 cut(s)	798
RsaI	GTAC	1 cut(s)	601
RsaNI	GTAC	1 cut(s)	600
RseI	CAYNNNNRTG	3 cut(s)	573, 701, 986
SacII	CCGCGG	2 cut(s)	127, 958
SaqAI	TTAA	4 cut(s)	132, 143, 935, 996
SatI	GCNGC	7 cut(s)	259, 262, 387, 492, 921, 924, 958
Sau3AI	GATC	2 cut(s)	643, 798
SchI	GAGTC	1 cut(s)	1022
ScrFI	CCNGG	2 cut(s)	803, 1021
SfaNI	GCATC	4 cut(s)	415, 439, 478, 871
Sfr303I	CCGCGG	2 cut(s)	127, 958
SgrBI	CCGCGG	2 cut(s)	127, 958
SmiMI	CAYNNNNRTG	3 cut(s)	573, 701, 986
SphI	GCATGC	1 cut(s)	106
Sse9I	AATT	6 cut(s)	357, 627, 678, 776, 824, 830
SseBI	AGGCCT	1 cut(s)	110
SsiI	CCGC	9 cut(s)	41, 124, 126, 246, 261, 763, 945, 955, 957
SspI	AATATT	1 cut(s)	328
SspMI	CTAG	2 cut(s)	162, 846
StuI	AGGCCT	1 cut(s)	110
StyD4I	CCNGG	2 cut(s)	801, 1019
StyI	CCWWGG	1 cut(s)	294
TaaI	ACNGT	4 cut(s)	343, 524, 533, 604
TaiI	ACGT	1 cut(s)	867
TaqI	TCGA	1 cut(s)	658
TasI	AATT	6 cut(s)	357, 627, 678, 776, 824, 830
TauI	GCSGC	2 cut(s)	264, 960
TfiI	GAWTC	6 cut(s)	25, 158, 418, 470, 503, 593
Tru1I	TTAA	4 cut(s)	132, 143, 935, 996
Tru9I	TTAA	4 cut(s)	132, 143, 935, 996
TscAI	CASTG	3 cut(s)	229, 558, 967
TseI	GCWGC	5 cut(s)	258, 386, 491, 920, 923
TspDTI	ATGAA	3 cut(s)	219, 430, 440
TspRI	CASTG	3 cut(s)	229, 558, 967
XapI	RAATTY	2 cut(s)	357, 824
XceI	RCATGY	3 cut(s)	106, 769, 981
XmiI	GTMKAC	1 cut(s)	1016
XspI	CTAG	2 cut(s)	162, 846
Zsp2I	ATGCAT	1 cut(s)	983

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.