Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0005995

Physical Location & Seq

Genomic Coordinates Reverse (-)

34842408 .. 34846460

Gene Structure 4053 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1286600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGCTCTGCAAAAGTTACATAAGGAGTGTGATTGTTCAAGCTGGGAATATCGTAACGTCTACGAAGGCAAGGGTGCATTTCAACAATACTGATAGAATTTGCGTGCTTGCCAATTCGTGGAACCGAGCATTTAGGTCGAGTTTGAGGATGATGGTTGATACAGGCGCGACGGATGAACAGGGATCCGTTTTTGATGTGCTGCCTGACAAAGATGAGGATGGTGAATATACCAGTGGAGGGTGCAAAAGCGAAGGTGGAGAACTGAGTTGCGGTTATTCCAGTTTCAGGGGAAAAAGAGCAACTATGGAGGATTTTTATGATGTTAAAATGTCCAAAATTGATGGGCAAACGGTCTGCCTGTTTGGTATTTTCGATGGTCATGGCGGTTCTCGTGCTGCTCAATATTTGAAGGAGCATCTATTTGAGAATCTCATGAAGCATCCACAATTCATGACAGACACTAAGTTAGCTATTAGTGAATCATATCAACAGACCGATGCAGACTTTTTGGATTCTGAAAGAGATATATACCGGGATGATGGTTCTACTGCTTCAACAGCAGTCTTGGTTGGTAACCATCTATATGTTGCTAATGTTGGAGATTCACGTACAGTAATATCAAAGGCAGGAAAAGCTATTGCTTTGTCCGAGGATCATAAACCAAATCGAAGTGATGAGAGGAAGAGAATTGAGAGTGCTGGGGGTTTTGTAATGTGGACAGGCACTTGGAGAGTAGGCGGTGTGCTGGCCATGTCTCGGGCTTTTGGGAACCGCATGTTGAAGCAATATGTTGTTGCAGAACCTGAGATCCAGGACCTAGTGGTGGATGAAGATTTTGAGTTTCTAGTGCTTGCTAGTGATGGGGTATGGGATGTGCTACCAAATGAGGTTGCTGTTGAAGTTGCCAAAACAGAAGAAGAACCCGAGGCAGCAGCTCGAAAGTTGACGGCGGTTGCCTTTTCCCGTGGCAGTGCAGACAACATAACATGCATTGTGGTGAAGTTCCAGCATGACAAAGCAGGGCCAGCCAGTCCTCACCAAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008150 GO:0009846 GO:0009856 GO:0022414 GO:0032501 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0051704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

349

Amino Acids

38.32

Weight (kDa)

5.16

Isoelectric Point (pI)

37.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	91 - 328	5.7e-64	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53140 AT5G53140
fragaria_vesca	FvH4_7g31190
malus_domestica	MD01G1216600.v1.1 MD07G1286600.v1.1
prunus_persica	Prupe.2G308600_v2.0.a1 Prupe.2G308600_v2.0.a1 Prupe.2G308600_v2.0.a1 Prupe.2G308600_v2.0.a1 Prupe.2G308600_v2.0.a1 Prupe.2G308600_v2.0.a1 Prupe.2G308600_v2.0.a1 Prupe.2G308600_v2.0.a1
pyrus_communis	pycom07g25970
rosa_chinensis	RchiOBHm_Chr1g0380251
rosa_laevigata	RLG00000026315
rosa_multiflora	Rmu_sc0001232.1_g000029
rosa_roxburghii	Rroxscaffold_4G00279540
rosa_rugosa	Rorug01G0419300 Rorug01G0419400 Rorug01G0419500
rosa_samantha	Rh1AG444100 Rh1BG399200 Rh1CG412600 Rh1DG429700
rosa_wichuraiana	Rw1G038570 Rw1G038640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	117
AccI	GTMKAC	1 cut(s)	59
AccII	CGCG	1 cut(s)	167
AciI	CCGC	5 cut(s)	270, 384, 738, 772, 950
AclWI	GGATC	4 cut(s)	177, 190, 660, 802
AcoI	YGGCCR	1 cut(s)	747
AcsI	RAATTY	1 cut(s)	96
AfaI	GTAC	1 cut(s)	610
AfiI	CCNNNNNNNGG	5 cut(s)	117, 237, 285, 756, 823
AgsI	TTSAA	6 cut(s)	38, 82, 409, 555, 781, 899
AjnI	CCWGG	1 cut(s)	810
AloI	GAACNNNNNNTCC	2 cut(s)	792, 824
AluBI	AGCT	4 cut(s)	41, 470, 635, 935
AluI	AGCT	4 cut(s)	41, 470, 635, 935
Alw26I	GTCTC	1 cut(s)	759
AlwI	GGATC	4 cut(s)	177, 190, 660, 802
AlwNI	CAGNNNCTG	1 cut(s)	803
Ama87I	CYCGRG	2 cut(s)	756, 923
AoxI	GGCC	2 cut(s)	747, 1022
ApeKI	GCWGC	4 cut(s)	199, 395, 929, 932
ApoI	RAATTY	1 cut(s)	96
AspLEI	GCGC	1 cut(s)	167
AspS9I	GGNCC	2 cut(s)	814, 1022
AsuC2I	CCSGG	1 cut(s)	533
AsuHPI	GGTGA	3 cut(s)	233, 1009, 1028
AvaI	CYCGRG	2 cut(s)	756, 923
AvaII	GGWCC	1 cut(s)	814
BalI	TGGCCA	1 cut(s)	749
BamHI	GGATCC	1 cut(s)	182
BauI	CACGAG	1 cut(s)	390
BbvI	GCAGC	4 cut(s)	186, 382, 941, 944
BccI	CCATC	7 cut(s)	145, 212, 335, 368, 533, 585, 854
BceAI	ACGGC	1 cut(s)	963
BcgI	CGANNNNNNTGC	2 cut(s)	117, 151
BciT130I	CCWGG	1 cut(s)	812
BcnI	CCSGG	1 cut(s)	533
BcoDI	GTCTC	1 cut(s)	759
BfaI	CTAG	3 cut(s)	818, 845, 855
BisI	GCNGC	4 cut(s)	200, 396, 930, 933
BlsI	GCNGC	4 cut(s)	201, 397, 931, 934
Bme1390I	CCNGG	2 cut(s)	533, 812
Bme18I	GGWCC	1 cut(s)	814
BmeT110I	CYCGRG	2 cut(s)	756, 923
BmgT120I	GGNCC	2 cut(s)	814, 1022
BmiI	GGNNCC	3 cut(s)	122, 184, 770
BmrFI	CCNGG	2 cut(s)	533, 812
BmsI	GCATC	3 cut(s)	424, 448, 487
BpuMI	CCSGG	1 cut(s)	533
BsaAI	YACGTR	1 cut(s)	608
BsaJI	CCNNGG	3 cut(s)	648, 924, 964
Bsc4I	CCNNNNNNNGG	5 cut(s)	117, 237, 285, 756, 823
Bse1I	ACTGG	3 cut(s)	231, 279, 1029
BseBI	CCWGG	1 cut(s)	812
BseDI	CCNNGG	3 cut(s)	648, 924, 964
BseGI	GGATG	7 cut(s)	153, 178, 223, 439, 541, 832, 877
BseLI	CCNNNNNNNGG	5 cut(s)	117, 237, 285, 756, 823
BseMII	CTCAG	2 cut(s)	254, 795
BseNI	ACTGG	3 cut(s)	231, 279, 1029
BseXI	GCAGC	4 cut(s)	186, 382, 941, 944
BseYI	CCCAGC	2 cut(s)	41, 698
BsgI	GTGCAG	1 cut(s)	993
Bsh1236I	CGCG	1 cut(s)	167
BshFI	GGCC	2 cut(s)	749, 1024
BsiHKCI	CYCGRG	2 cut(s)	756, 923
BsiSI	CCGG	1 cut(s)	532
BslI	CCNNNNNNNGG	5 cut(s)	117, 237, 285, 756, 823
BsmAI	GTCTC	1 cut(s)	759
BsnI	GGCC	2 cut(s)	749, 1024
BsoBI	CYCGRG	2 cut(s)	756, 923
Bsp143I	GATC	3 cut(s)	182, 652, 807
BspACI	CCGC	5 cut(s)	270, 384, 738, 772, 950
BspANI	GGCC	2 cut(s)	749, 1024
BspCNI	CTCAG	2 cut(s)	255, 796
BspFNI	CGCG	1 cut(s)	167
BspHI	TCATGA	2 cut(s)	432, 450
BspLI	GGNNCC	3 cut(s)	122, 184, 770
BspPI	GGATC	4 cut(s)	177, 190, 660, 802
BsrI	ACTGG	3 cut(s)	231, 279, 1029
BssECI	CCNNGG	3 cut(s)	648, 924, 964
BssMI	GATC	3 cut(s)	182, 652, 807
BssSI	CACGAG	1 cut(s)	390
Bst2BI	CACGAG	1 cut(s)	390
Bst2UI	CCWGG	1 cut(s)	812
Bst4CI	ACNGT	2 cut(s)	352, 613
Bst6I	CTCTTC	1 cut(s)	677
BstBAI	YACGTR	1 cut(s)	608
BstC8I	GCNNGC	5 cut(s)	104, 108, 747, 852, 1026
BstDEI	CTNAG	3 cut(s)	263, 462, 804
BstDSI	CCRYGG	1 cut(s)	964
BstEII	GGTNACC	1 cut(s)	572
BstF5I	GGATG	7 cut(s)	153, 178, 223, 439, 541, 832, 877
BstFNI	CGCG	1 cut(s)	167
BstHHI	GCGC	1 cut(s)	167
BstKTI	GATC	3 cut(s)	185, 655, 810
BstMAI	GTCTC	1 cut(s)	759
BstMBI	GATC	3 cut(s)	182, 652, 807
BstMWI	GCNNNNNNNGC	3 cut(s)	557, 632, 1025
BstNI	CCWGG	1 cut(s)	812
BstNSI	RCATGY	2 cut(s)	778, 990
BstPI	GGTNACC	1 cut(s)	572
BstSCI	CCNGG	2 cut(s)	531, 810
BstUI	CGCG	1 cut(s)	167
BstV1I	GCAGC	4 cut(s)	186, 382, 941, 944
BstX2I	RGATCY	2 cut(s)	182, 807
BstYI	RGATCY	2 cut(s)	182, 807
BsuRI	GGCC	2 cut(s)	749, 1024
BtgI	CCRYGG	1 cut(s)	964
BtsCI	GGATG	7 cut(s)	153, 178, 223, 439, 541, 832, 877
BtsI	GCAGTG	1 cut(s)	976
BtsIMutI	CAGTG	2 cut(s)	238, 976
Cac8I	GCNNGC	5 cut(s)	104, 108, 747, 852, 1026
CaiI	CAGNNNCTG	1 cut(s)	803
CciI	TCATGA	2 cut(s)	432, 450
CfoI	GCGC	1 cut(s)	167
Cfr13I	GGNCC	2 cut(s)	814, 1022
Csp6I	GTAC	1 cut(s)	609
CviAII	CATG	7 cut(s)	380, 433, 451, 751, 775, 987, 1010
CviJI	RGCY	8 cut(s)	41, 470, 635, 749, 761, 935, 1024, 1028
CviKI_1	RGCY	8 cut(s)	41, 470, 635, 749, 761, 935, 1024, 1028
CviQI	GTAC	1 cut(s)	609
DdeI	CTNAG	3 cut(s)	263, 462, 804
DpnI	GATC	3 cut(s)	184, 654, 809
DpnII	GATC	3 cut(s)	182, 652, 807
EaeI	YGGCCR	1 cut(s)	747
Eam1104I	CTCTTC	1 cut(s)	677
EarI	CTCTTC	1 cut(s)	677
Eco47I	GGWCC	1 cut(s)	814
Eco88I	CYCGRG	2 cut(s)	756, 923
Eco91I	GGTNACC	1 cut(s)	572
EcoO109I	RGGNCCY	1 cut(s)	814
EcoO65I	GGTNACC	1 cut(s)	572
EcoRII	CCWGG	1 cut(s)	810
EcoT22I	ATGCAT	1 cut(s)	992
FaeI	CATG	7 cut(s)	383, 436, 454, 754, 778, 990, 1013
FatI	CATG	7 cut(s)	379, 432, 450, 750, 774, 986, 1009
FblI	GTMKAC	1 cut(s)	59
Fnu4HI	GCNGC	4 cut(s)	200, 396, 930, 933
FokI	GGATG	7 cut(s)	160, 185, 230, 426, 548, 839, 884
Fsp4HI	GCNGC	4 cut(s)	200, 396, 930, 933
FspBI	CTAG	3 cut(s)	818, 845, 855
GlaI	GCGC	1 cut(s)	166
GluI	GCNGC	4 cut(s)	200, 396, 930, 933
GsaI	CCCAGC	2 cut(s)	45, 702
HaeIII	GGCC	2 cut(s)	749, 1024
HapII	CCGG	1 cut(s)	532
HhaI	GCGC	1 cut(s)	167
Hin1II	CATG	7 cut(s)	383, 436, 454, 754, 778, 990, 1013
Hin6I	GCGC	1 cut(s)	165
HinP1I	GCGC	1 cut(s)	165
HincII	GTYRAC	1 cut(s)	945
HindII	GTYRAC	1 cut(s)	945
HinfI	GANTC	4 cut(s)	427, 479, 512, 602
HpaII	CCGG	1 cut(s)	532
HphI	GGTGA	3 cut(s)	233, 1009, 1028
Hpy166II	GTNNAC	3 cut(s)	60, 717, 945
Hpy188I	TCNGA	2 cut(s)	517, 649
Hpy188III	TCNNGA	2 cut(s)	433, 451
Hpy8I	GTNNAC	3 cut(s)	60, 717, 945
Hpy99I	CGWCG	1 cut(s)	172
HpyAV	CCTTC	3 cut(s)	58, 245, 403
HpyCH4III	ACNGT	2 cut(s)	352, 613
HpyCH4IV	ACGT	2 cut(s)	56, 607
HpyCH4V	TGCA	7 cut(s)	9, 76, 243, 500, 797, 974, 990
HpyF10VI	GCNNNNNNNGC	3 cut(s)	557, 632, 1025
HpyF3I	CTNAG	3 cut(s)	263, 462, 804
HpySE526I	ACGT	2 cut(s)	56, 607
Hsp92II	CATG	7 cut(s)	383, 436, 454, 754, 778, 990, 1013
HspAI	GCGC	1 cut(s)	165
Kzo9I	GATC	3 cut(s)	182, 652, 807
LmnI	GCTCC	1 cut(s)	412
Lsp1109I	GCAGC	4 cut(s)	186, 382, 941, 944
LweI	GCATC	3 cut(s)	424, 448, 487
MaeI	CTAG	3 cut(s)	818, 845, 855
MaeII	ACGT	2 cut(s)	56, 607
MaeIII	GTNAC	3 cut(s)	14, 52, 572
MalI	GATC	3 cut(s)	184, 654, 809
MboI	GATC	3 cut(s)	182, 652, 807
MboII	GAAGA	4 cut(s)	694, 842, 926, 929
MflI	RGATCY	2 cut(s)	182, 807
MlsI	TGGCCA	1 cut(s)	749
MluCI	AATT	5 cut(s)	96, 112, 336, 446, 687
MluNI	TGGCCA	1 cut(s)	749
MmeI	TCCRAC	1 cut(s)	577
MnlI	CCTC	9 cut(s)	138, 208, 230, 301, 643, 672, 880, 919, 1044
Mox20I	TGGCCA	1 cut(s)	749
Mph1103I	ATGCAT	1 cut(s)	992
MscI	TGGCCA	1 cut(s)	749
MseI	TTAA	1 cut(s)	324
MslI	CAYNNNNRTG	2 cut(s)	582, 995
Msp20I	TGGCCA	1 cut(s)	749
MspI	CCGG	1 cut(s)	532
MspR9I	CCNGG	2 cut(s)	533, 812
MvaI	CCWGG	1 cut(s)	812
MvnI	CGCG	1 cut(s)	167
MwoI	GCNNNNNNNGC	3 cut(s)	557, 632, 1025
NciI	CCSGG	1 cut(s)	533
NdeII	GATC	3 cut(s)	182, 652, 807
NlaIII	CATG	7 cut(s)	383, 436, 454, 754, 778, 990, 1013
NlaIV	GGNNCC	3 cut(s)	122, 184, 770
NsiI	ATGCAT	1 cut(s)	992
NspI	RCATGY	2 cut(s)	778, 990
PagI	TCATGA	2 cut(s)	432, 450
PfeI	GAWTC	4 cut(s)	427, 479, 512, 602
PflMI	CCANNNNNTGG	1 cut(s)	117
PfoI	TCCNGGA	1 cut(s)	810
PkrI	GCNGC	4 cut(s)	201, 397, 931, 934
Ppu21I	YACGTR	1 cut(s)	608
PpuMI	RGGWCCY	1 cut(s)	814
Psp5II	RGGWCCY	1 cut(s)	814
Psp6I	CCWGG	1 cut(s)	810
PspEI	GGTNACC	1 cut(s)	572
PspFI	CCCAGC	2 cut(s)	41, 698
PspGI	CCWGG	1 cut(s)	810
PspN4I	GGNNCC	3 cut(s)	122, 184, 770
PspPI	GGNCC	2 cut(s)	814, 1022
PspPPI	RGGWCCY	1 cut(s)	814
PstNI	CAGNNNCTG	1 cut(s)	803
PsuI	RGATCY	2 cut(s)	182, 807
RsaI	GTAC	1 cut(s)	610
RsaNI	GTAC	1 cut(s)	609
RseI	CAYNNNNRTG	2 cut(s)	582, 995
SaqAI	TTAA	1 cut(s)	324
SatI	GCNGC	4 cut(s)	200, 396, 930, 933
Sau3AI	GATC	3 cut(s)	182, 652, 807
Sau96I	GGNCC	2 cut(s)	814, 1022
ScrFI	CCNGG	2 cut(s)	533, 812
SfaNI	GCATC	3 cut(s)	424, 448, 487
SinI	GGWCC	1 cut(s)	814
SmiMI	CAYNNNNRTG	2 cut(s)	582, 995
Sse9I	AATT	5 cut(s)	96, 112, 336, 446, 687
SsiI	CCGC	5 cut(s)	270, 384, 738, 772, 950
SspI	AATATT	1 cut(s)	404
SspMI	CTAG	3 cut(s)	818, 845, 855
StyD4I	CCNGG	2 cut(s)	531, 810
TaaI	ACNGT	2 cut(s)	352, 613
TaiI	ACGT	2 cut(s)	59, 610
TaqI	TCGA	4 cut(s)	137, 372, 667, 937
TaqII	GACCGA	1 cut(s)	509
TasI	AATT	5 cut(s)	96, 112, 336, 446, 687
TfiI	GAWTC	4 cut(s)	427, 479, 512, 602
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TscAI	CASTG	2 cut(s)	238, 976
TseI	GCWGC	4 cut(s)	199, 395, 929, 932
TspDTI	ATGAA	4 cut(s)	189, 439, 449, 843
TspGWI	ACGGA	2 cut(s)	175, 185
TspRI	CASTG	2 cut(s)	238, 976
Van91I	CCANNNNNTGG	1 cut(s)	117
VpaK11BI	GGWCC	1 cut(s)	814
XapI	RAATTY	1 cut(s)	96
XceI	RCATGY	2 cut(s)	778, 990
XmiI	GTMKAC	1 cut(s)	59
XspI	CTAG	3 cut(s)	818, 845, 855
Zsp2I	ATGCAT	1 cut(s)	992

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.