Rh1DG429700

phosphatase 2c

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0005995
Physical Location & Seq
Reverse (-)
64209151 .. 64212443
3293 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG429700.1

Sequence Viewer

Length: 948 bp
ATGCAAACCTCTTTGGGGAACCGCGAATTTAAGACAACGAGTTTAAGGATGATGGTTGATTCTAGTGCGACTGAGAAACAGGGTTCCATTGTTGATGTCTTATTGCAGAAAGATGACGAGGGTGGATATATCAGTGGAGGCTGGAAAAGTGAAGGCGGAAAACTTAGCTGTGGCTATTGCAGTTTTAGGGGAAAAAGAGCCACCATGGAGGATTTTTATGATATAAAAACTTCCAAGATTGATGGGCAAACAGTTTGCCTCTTTGGAATTTTTGATGGTCATGGTGGTTCTCGTGCTGCTGAATATCTGAAGGAGCATCTATTTGAGAATCTCATGAAGCATCCAAACTTTATCACAGACACCAAGTTGGCTATTAGTGAATCATATCAACAAACTGATGCAGCTTTTTTGGATTCTGAAAGGGATACATATCGTGATGATGGTTCTACTGCTTCAACAGCAGTCTTAGTGGGTAACCATCTATACGTTGCCAATGTTGGAGATTCTCGTACAGTAATATCAAAAGCAGGCAAAGCAATTCCTCTATCTGAGGATCATAAACCAAATCGAACTGATGAGAGAAAGAGAATTGAAAATGCTGGGGGCATTGTAATGTGGGCAGGAACTTGGAGGGTAGGAGGTGTTTTGGCTATGTCTCGGGCTTTCGGAAACCGTATGTTGAAGCAATTTGTTGTTGCAGAACCTGAAATCCAGGACCAAGTGATAGATGAAGAATTTGAATTGCTGGTGCTCGCTAGTGATGGGCTGTGGGACGTGGTGCCAAATGAGGATGCTGTTTCACTTGCCCGAACAGAAGAAGAACCCGAGGCGGCAGCTCGGAAGTTAACGGGAACTGCATTTGCCCGTGGTAGTGCAGACAATATAACATCCATTGTGGTGAGGTTCCACCATGACAAAGCAGAGTCTGCTGGGGCTAACCATGATTAG

Protein Analysis

315

Amino Acids

34.54

Weight (kDa)

5.15

Isoelectric Point (pI)

31.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 57 - 295 2.2e-64 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 778
AccII CGCG 1 cut(s) 24
AciI CCGC 3 cut(s) 22, 156, 830
AclWI GGATC 1 cut(s) 561
AcsI RAATTY 3 cut(s) 26, 267, 734
AcuI CTGAAG 1 cut(s) 329
AfaI GTAC 1 cut(s) 511
AfiI CCNNNNNNNGG 1 cut(s) 15
AgsI TTSAA 4 cut(s) 456, 593, 682, 740
AjiI CACGTC 1 cut(s) 775
AjnI CCWGG 1 cut(s) 711
AloI GAACNNNNNNTCC 2 cut(s) 693, 725
AluBI AGCT 3 cut(s) 168, 404, 836
AluI AGCT 3 cut(s) 168, 404, 836
Alw21I GWGCWC 1 cut(s) 753
Alw26I GTCTC 1 cut(s) 660
AlwI GGATC 1 cut(s) 561
AlwNI CAGNNNCTG 2 cut(s) 704, 926
Ama87I CYCGRG 2 cut(s) 657, 824
ApeKI GCWGC 3 cut(s) 296, 401, 833
ApoI RAATTY 3 cut(s) 26, 267, 734
AspS9I GGNCC 1 cut(s) 715
AsuHPI GGTGA 1 cut(s) 910
AvaI CYCGRG 2 cut(s) 657, 824
AvaII GGWCC 1 cut(s) 715
BanI GGYRCC 1 cut(s) 778
BauI CACGAG 1 cut(s) 291
Bbv12I GWGCWC 1 cut(s) 753
BbvI GCAGC 3 cut(s) 283, 413, 845
BccI CCATC 6 cut(s) 46, 236, 269, 434, 486, 755
BciT130I CCWGG 1 cut(s) 713
BciVI GTATCC 1 cut(s) 418
BcoDI GTCTC 1 cut(s) 660
BfaI CTAG 2 cut(s) 63, 756
BfuI GTATCC 1 cut(s) 418
BisI GCNGC 4 cut(s) 297, 402, 831, 834
BlsI GCNGC 4 cut(s) 298, 403, 832, 835
Bme1390I CCNGG 1 cut(s) 713
Bme18I GGWCC 1 cut(s) 715
BmeT110I CYCGRG 2 cut(s) 657, 824
BmgBI CACGTC 1 cut(s) 775
BmgT120I GGNCC 1 cut(s) 715
BmiI GGNNCC 4 cut(s) 20, 85, 780, 905
BmrFI CCNGG 1 cut(s) 713
BmsI GCATC 4 cut(s) 325, 349, 388, 781
BsaBI GATNNNNATC 1 cut(s) 429
BsaJI CCNNGG 3 cut(s) 204, 825, 865
Bsc4I CCNNNNNNNGG 1 cut(s) 15
Bse8I GATNNNNATC 1 cut(s) 429
BseBI CCWGG 1 cut(s) 713
BseDI CCNNGG 3 cut(s) 204, 825, 865
BseGI GGATG 4 cut(s) 54, 340, 796, 887
BseJI GATNNNNATC 1 cut(s) 429
BseLI CCNNNNNNNGG 1 cut(s) 15
BseMII CTCAG 2 cut(s) 63, 540
BseXI GCAGC 3 cut(s) 283, 413, 845
BseYI CCCAGC 2 cut(s) 599, 929
BsgI GTGCAG 1 cut(s) 894
Bsh1236I CGCG 1 cut(s) 24
BshNI GGYRCC 1 cut(s) 778
BsiHKAI GWGCWC 1 cut(s) 753
BsiHKCI CYCGRG 2 cut(s) 657, 824
BslFI GGGAC 1 cut(s) 785
BslI CCNNNNNNNGG 1 cut(s) 15
BsmAI GTCTC 1 cut(s) 660
BsmFI GGGAC 1 cut(s) 785
BsoBI CYCGRG 2 cut(s) 657, 824
Bsp1286I GDGCHC 1 cut(s) 753
Bsp143I GATC 1 cut(s) 553
Bsp19I CCATGG 1 cut(s) 204
BspACI CCGC 3 cut(s) 22, 156, 830
BspCNI CTCAG 2 cut(s) 64, 541
BspFNI CGCG 1 cut(s) 24
BspHI TCATGA 1 cut(s) 333
BspLI GGNNCC 4 cut(s) 20, 85, 780, 905
BspPI GGATC 1 cut(s) 561
BspT107I GGYRCC 1 cut(s) 778
BssECI CCNNGG 3 cut(s) 204, 825, 865
BssMI GATC 1 cut(s) 553
BssSI CACGAG 1 cut(s) 291
BssT1I CCWWGG 1 cut(s) 204
Bst2BI CACGAG 1 cut(s) 291
Bst2UI CCWGG 1 cut(s) 713
Bst4CI ACNGT 3 cut(s) 253, 514, 674
BstAPI GCANNNNNTGC 1 cut(s) 926
BstC8I GCNNGC 2 cut(s) 529, 753
BstDEI CTNAG 4 cut(s) 72, 164, 466, 549
BstDSI CCRYGG 2 cut(s) 204, 865
BstEII GGTNACC 1 cut(s) 473
BstF5I GGATG 4 cut(s) 54, 340, 796, 887
BstFNI CGCG 1 cut(s) 24
BstKTI GATC 1 cut(s) 556
BstMAI GTCTC 1 cut(s) 660
BstMBI GATC 1 cut(s) 553
BstMWI GCNNNNNNNGC 3 cut(s) 458, 533, 926
BstNI CCWGG 1 cut(s) 713
BstPI GGTNACC 1 cut(s) 473
BstSCI CCNGG 1 cut(s) 711
BstUI CGCG 1 cut(s) 24
BstV1I GCAGC 3 cut(s) 283, 413, 845
BsuI GTATCC 1 cut(s) 418
BtgI CCRYGG 2 cut(s) 204, 865
BtrI CACGTC 1 cut(s) 775
BtsCI GGATG 4 cut(s) 54, 340, 796, 887
BtsIMutI CAGTG 1 cut(s) 139
Cac8I GCNNGC 2 cut(s) 529, 753
CaiI CAGNNNCTG 2 cut(s) 704, 926
CciI TCATGA 1 cut(s) 333
Cfr13I GGNCC 1 cut(s) 715
Csp6I GTAC 1 cut(s) 510
CviAII CATG 5 cut(s) 205, 281, 334, 911, 941
CviQI GTAC 1 cut(s) 510
DdeI CTNAG 4 cut(s) 72, 164, 466, 549
DpnI GATC 1 cut(s) 555
DpnII GATC 1 cut(s) 553
EciI GGCGGA 1 cut(s) 171
Eco130I CCWWGG 1 cut(s) 204
Eco47I GGWCC 1 cut(s) 715
Eco57I CTGAAG 1 cut(s) 329
Eco88I CYCGRG 2 cut(s) 657, 824
Eco91I GGTNACC 1 cut(s) 473
EcoO65I GGTNACC 1 cut(s) 473
EcoRII CCWGG 1 cut(s) 711
EcoT14I CCWWGG 1 cut(s) 204
ErhI CCWWGG 1 cut(s) 204
FaeI CATG 5 cut(s) 208, 284, 337, 914, 944
FaqI GGGAC 1 cut(s) 785
FatI CATG 5 cut(s) 204, 280, 333, 910, 940
Fnu4HI GCNGC 4 cut(s) 297, 402, 831, 834
FokI GGATG 4 cut(s) 61, 327, 803, 874
Fsp4HI GCNGC 4 cut(s) 297, 402, 831, 834
FspBI CTAG 2 cut(s) 63, 756
GluI GCNGC 4 cut(s) 297, 402, 831, 834
GsaI CCCAGC 2 cut(s) 603, 933
Hin1II CATG 5 cut(s) 208, 284, 337, 914, 944
HincII GTYRAC 1 cut(s) 846
HindII GTYRAC 1 cut(s) 846
HinfI GANTC 6 cut(s) 59, 328, 380, 413, 503, 923
HpaI GTTAAC 1 cut(s) 846
HphI GGTGA 1 cut(s) 910
Hpy166II GTNNAC 1 cut(s) 846
Hpy188I TCNGA 5 cut(s) 309, 418, 550, 668, 840
Hpy188III TCNNGA 2 cut(s) 334, 434
Hpy8I GTNNAC 1 cut(s) 846
HpyAV CCTTC 2 cut(s) 146, 304
HpyCH4III ACNGT 3 cut(s) 253, 514, 674
HpyCH4IV ACGT 2 cut(s) 486, 774
HpyCH4V TGCA 7 cut(s) 4, 106, 180, 401, 698, 857, 875
HpyF10VI GCNNNNNNNGC 3 cut(s) 458, 533, 926
HpyF3I CTNAG 4 cut(s) 72, 164, 466, 549
HpySE526I ACGT 2 cut(s) 486, 774
Hsp92II CATG 5 cut(s) 208, 284, 337, 914, 944
KspAI GTTAAC 1 cut(s) 846
Kzo9I GATC 1 cut(s) 553
LmnI GCTCC 1 cut(s) 313
Lsp1109I GCAGC 3 cut(s) 283, 413, 845
LweI GCATC 4 cut(s) 325, 349, 388, 781
MaeI CTAG 2 cut(s) 63, 756
MaeII ACGT 2 cut(s) 486, 774
MaeIII GTNAC 1 cut(s) 473
MalI GATC 1 cut(s) 555
MboI GATC 1 cut(s) 553
MboII GAAGA 3 cut(s) 743, 827, 830
MhlI GDGCHC 1 cut(s) 753
MluCI AATT 7 cut(s) 26, 267, 537, 588, 686, 734, 740
MlyI GAGTC 1 cut(s) 932
MmeI TCCRAC 1 cut(s) 478
MseI TTAA 3 cut(s) 30, 44, 845
MslI CAYNNNNRTG 2 cut(s) 611, 896
MspR9I CCNGG 1 cut(s) 713
MvaI CCWGG 1 cut(s) 713
MvnI CGCG 1 cut(s) 24
MwoI GCNNNNNNNGC 3 cut(s) 458, 533, 926
NcoI CCATGG 1 cut(s) 204
NdeII GATC 1 cut(s) 553
NlaIII CATG 5 cut(s) 208, 284, 337, 914, 944
NlaIV GGNNCC 4 cut(s) 20, 85, 780, 905
PagI TCATGA 1 cut(s) 333
PfeI GAWTC 5 cut(s) 59, 328, 380, 413, 503
PfoI TCCNGGA 1 cut(s) 711
PkrI GCNGC 4 cut(s) 298, 403, 832, 835
PleI GAGTC 1 cut(s) 931
PpsI GAGTC 1 cut(s) 931
Psp6I CCWGG 1 cut(s) 711
PspEI GGTNACC 1 cut(s) 473
PspFI CCCAGC 2 cut(s) 599, 929
PspGI CCWGG 1 cut(s) 711
PspN4I GGNNCC 4 cut(s) 20, 85, 780, 905
PspPI GGNCC 1 cut(s) 715
PstNI CAGNNNCTG 2 cut(s) 704, 926
RsaI GTAC 1 cut(s) 511
RsaNI GTAC 1 cut(s) 510
RseI CAYNNNNRTG 2 cut(s) 611, 896
SaqAI TTAA 3 cut(s) 30, 44, 845
SatI GCNGC 4 cut(s) 297, 402, 831, 834
Sau3AI GATC 1 cut(s) 553
Sau96I GGNCC 1 cut(s) 715
SchI GAGTC 1 cut(s) 932
ScrFI CCNGG 1 cut(s) 713
SduI GDGCHC 1 cut(s) 753
SetI ASST 9 cut(s) 11, 170, 406, 489, 643, 706, 777, 838, 905
SfaNI GCATC 4 cut(s) 325, 349, 388, 781
SinI GGWCC 1 cut(s) 715
SmiMI CAYNNNNRTG 2 cut(s) 611, 896
Sse9I AATT 7 cut(s) 26, 267, 537, 588, 686, 734, 740
SsiI CCGC 3 cut(s) 22, 156, 830
SspMI CTAG 2 cut(s) 63, 756
StyD4I CCNGG 1 cut(s) 711
StyI CCWWGG 1 cut(s) 204
TaaI ACNGT 3 cut(s) 253, 514, 674
TaiI ACGT 2 cut(s) 489, 777
TaqI TCGA 1 cut(s) 568
TasI AATT 7 cut(s) 26, 267, 537, 588, 686, 734, 740
TauI GCSGC 1 cut(s) 833
TfiI GAWTC 5 cut(s) 59, 328, 380, 413, 503
Tru1I TTAA 3 cut(s) 30, 44, 845
Tru9I TTAA 3 cut(s) 30, 44, 845
TscAI CASTG 1 cut(s) 139
TseI GCWGC 3 cut(s) 296, 401, 833
TspDTI ATGAA 2 cut(s) 350, 744
TspRI CASTG 1 cut(s) 139
VpaK11BI GGWCC 1 cut(s) 715
XapI RAATTY 3 cut(s) 26, 267, 734
XspI CTAG 2 cut(s) 63, 756
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.