Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0005995

Physical Location & Seq

Genomic Coordinates Reverse (-)

66067059 .. 66071450

Gene Structure 4392 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G038570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGATATGCAAGAGTGGGATAAGGAATCTGATTGTTCAAGCTGGGAATATAGTAGCGCGCACAAAAACTGGGGCGCATTTGAACAACATTGGGAGAGTTTGCATGCAAACCTCTTTGGGGAACCGCGAATTTAAGACAACGAGTTTAAGGATGATGGTTGATTCTAGTGCGACCGAGAAACAGGGTTCCATTGTTGATCTCTTATTGCAGAAAGATGACGAGGGTGGATTTCTCAGTGGAGGCTGGAAAAGTGAAGGCGGAAAACTTAGCTGTGGCTTTTGCAGTTTTAGGGGAAAAAGAGCCACCATGGAGGATTTTTATGATATAAAAACTTCCAAGATTGATGGGCAAACAGTTTGCCTCTTTGGAATTTTTGATGGTCATGGTGGTTCTCGTGCTGCTGAATATCTGAAGGAGCATCTATTTGAGAATCTTATGAAGCATCCAAACTTTATCACAGACACCAAGTTAGCTATTAGTGAATCATATCAACAAACTGATGCAGCCTTTTTGGATTCTGAAAGGGATACATACCGCGATGATGGTTCTACTGCTTCAACAGCAGTCTTAGTGGGCAACCATCTATACGTTGCCAATGTTGGAGATTCTCGTACAGTAATATCAAAGGCAGGCAAAGCAATTCCTCTATCTGAGGATCATAAACCAAATCGAACTGATGAGAGAAAGAGAATTGAAAATGCTGGGGGCATTGTAATGTGGGCAGGAACTTGGAGGGTAGGAGGTGTTTTGGCTATGTCTCGGGCTTTCGGAAACCGCATGTTGAAGCAATTTGTTGTCGCAGAACCTGAGATCCAGGACCAAGTGATAGATGAAGAATTTGAATTGCTGGTGCTCGCTAGTGATGGGCTGTGGGACGTGGTGCCAAATGAGGATGCTGTTTCACTTGCCCGAACAGAAGAAGAACCTGAGGCGGCAGCTCGGAAGTTAACGGGAACAGCATTTGCCCGTGGTAGTGCAGACAATATAACATCCATTGTGGTGAGGTTCCACCATGACAAAGCAGAGTCTGCTGGGGCTAACCATGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008150 GO:0009846 GO:0009856 GO:0022414 GO:0032501 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0051704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

349

Amino Acids

38.13

Weight (kDa)

5.67

Isoelectric Point (pI)

32.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	91 - 329	1e-64	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53140 AT5G53140
fragaria_vesca	FvH4_7g31190
malus_domestica	MD01G1216600.v1.1 MD07G1286600.v1.1
prunus_persica	Prupe.2G308600_v2.0.a1 Prupe.2G308600_v2.0.a1 Prupe.2G308600_v2.0.a1 Prupe.2G308600_v2.0.a1 Prupe.2G308600_v2.0.a1 Prupe.2G308600_v2.0.a1 Prupe.2G308600_v2.0.a1 Prupe.2G308600_v2.0.a1
pyrus_communis	pycom07g25970
rosa_chinensis	RchiOBHm_Chr1g0380251
rosa_laevigata	RLG00000026315
rosa_multiflora	Rmu_sc0001232.1_g000029
rosa_roxburghii	Rroxscaffold_4G00279540
rosa_rugosa	Rorug01G0419300 Rorug01G0419400 Rorug01G0419500
rosa_samantha	Rh1AG444100 Rh1BG399200 Rh1CG412600 Rh1DG429700
rosa_wichuraiana	Rw1G038570 Rw1G038640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	880
AccII	CGCG	3 cut(s)	58, 126, 537
AciI	CCGC	5 cut(s)	124, 258, 535, 775, 932
AclWI	GGATC	2 cut(s)	663, 805
AcsI	RAATTY	3 cut(s)	128, 369, 836
AcuI	CTGAAG	1 cut(s)	431
AfaI	GTAC	1 cut(s)	613
AfiI	CCNNNNNNNGG	1 cut(s)	117
AgsI	TTSAA	6 cut(s)	38, 82, 558, 695, 784, 842
AjiI	CACGTC	1 cut(s)	877
AjnI	CCWGG	1 cut(s)	813
AloI	GAACNNNNNNTCC	2 cut(s)	795, 827
AluBI	AGCT	4 cut(s)	41, 270, 473, 938
AluI	AGCT	4 cut(s)	41, 270, 473, 938
Alw21I	GWGCWC	1 cut(s)	855
Alw26I	GTCTC	1 cut(s)	762
AlwI	GGATC	2 cut(s)	663, 805
AlwNI	CAGNNNCTG	2 cut(s)	806, 1028
Ama87I	CYCGRG	1 cut(s)	759
ApeKI	GCWGC	3 cut(s)	398, 503, 935
ApoI	RAATTY	3 cut(s)	128, 369, 836
AspLEI	GCGC	3 cut(s)	58, 60, 76
AspS9I	GGNCC	1 cut(s)	817
AsuHPI	GGTGA	1 cut(s)	1012
AvaI	CYCGRG	1 cut(s)	759
AvaII	GGWCC	1 cut(s)	817
AxyI	CCTNAGG	1 cut(s)	927
BanI	GGYRCC	1 cut(s)	880
BauI	CACGAG	1 cut(s)	393
Bbv12I	GWGCWC	1 cut(s)	855
BbvI	GCAGC	3 cut(s)	385, 515, 947
BccI	CCATC	6 cut(s)	148, 338, 371, 536, 588, 857
BciT130I	CCWGG	1 cut(s)	815
BciVI	GTATCC	1 cut(s)	520
BcoDI	GTCTC	1 cut(s)	762
BfaI	CTAG	2 cut(s)	165, 858
BfuI	GTATCC	1 cut(s)	520
BisI	GCNGC	4 cut(s)	399, 504, 933, 936
BlsI	GCNGC	4 cut(s)	400, 505, 934, 937
Bme1390I	CCNGG	1 cut(s)	815
Bme18I	GGWCC	1 cut(s)	817
BmeT110I	CYCGRG	1 cut(s)	759
BmgBI	CACGTC	1 cut(s)	877
BmgT120I	GGNCC	1 cut(s)	817
BmiI	GGNNCC	4 cut(s)	122, 187, 882, 1007
BmrFI	CCNGG	1 cut(s)	815
BmrI	ACTGGG	1 cut(s)	78
BmsI	GCATC	4 cut(s)	427, 451, 490, 883
BmuI	ACTGGG	1 cut(s)	78
BsaJI	CCNNGG	2 cut(s)	306, 967
Bsc4I	CCNNNNNNNGG	1 cut(s)	117
Bse1I	ACTGG	1 cut(s)	73
Bse21I	CCTNAGG	1 cut(s)	927
BseBI	CCWGG	1 cut(s)	815
BseDI	CCNNGG	2 cut(s)	306, 967
BseGI	GGATG	4 cut(s)	156, 442, 898, 989
BseLI	CCNNNNNNNGG	1 cut(s)	117
BseMII	CTCAG	4 cut(s)	247, 642, 798, 918
BseNI	ACTGG	1 cut(s)	73
BsePI	GCGCGC	1 cut(s)	56
BseXI	GCAGC	3 cut(s)	385, 515, 947
BseYI	CCCAGC	3 cut(s)	41, 701, 1031
BsgI	GTGCAG	1 cut(s)	996
Bsh1236I	CGCG	3 cut(s)	58, 126, 537
Bsh1285I	CGRYCG	1 cut(s)	174
BshNI	GGYRCC	1 cut(s)	880
BsiEI	CGRYCG	1 cut(s)	174
BsiHKAI	GWGCWC	1 cut(s)	855
BsiHKCI	CYCGRG	1 cut(s)	759
BslFI	GGGAC	1 cut(s)	887
BslI	CCNNNNNNNGG	1 cut(s)	117
BsmAI	GTCTC	1 cut(s)	762
BsmFI	GGGAC	1 cut(s)	887
BsoBI	CYCGRG	1 cut(s)	759
Bsp1286I	GDGCHC	1 cut(s)	855
Bsp143I	GATC	3 cut(s)	196, 655, 810
Bsp19I	CCATGG	1 cut(s)	306
BspACI	CCGC	5 cut(s)	124, 258, 535, 775, 932
BspCNI	CTCAG	4 cut(s)	246, 643, 799, 919
BspFNI	CGCG	3 cut(s)	58, 126, 537
BspLI	GGNNCC	4 cut(s)	122, 187, 882, 1007
BspPI	GGATC	2 cut(s)	663, 805
BspT107I	GGYRCC	1 cut(s)	880
BsrI	ACTGG	1 cut(s)	73
BssECI	CCNNGG	2 cut(s)	306, 967
BssHII	GCGCGC	1 cut(s)	56
BssMI	GATC	3 cut(s)	196, 655, 810
BssSI	CACGAG	1 cut(s)	393
BssT1I	CCWWGG	1 cut(s)	306
Bst2BI	CACGAG	1 cut(s)	393
Bst2UI	CCWGG	1 cut(s)	815
Bst4CI	ACNGT	2 cut(s)	355, 616
BstAPI	GCANNNNNTGC	1 cut(s)	1028
BstC8I	GCNNGC	4 cut(s)	58, 104, 631, 855
BstDEI	CTNAG	6 cut(s)	233, 266, 568, 651, 807, 927
BstDSI	CCRYGG	2 cut(s)	306, 967
BstF5I	GGATG	4 cut(s)	156, 442, 898, 989
BstFNI	CGCG	3 cut(s)	58, 126, 537
BstHHI	GCGC	3 cut(s)	58, 60, 76
BstKTI	GATC	3 cut(s)	199, 658, 813
BstMAI	GTCTC	1 cut(s)	762
BstMBI	GATC	3 cut(s)	196, 655, 810
BstMCI	CGRYCG	1 cut(s)	174
BstMWI	GCNNNNNNNGC	3 cut(s)	560, 635, 1028
BstNI	CCWGG	1 cut(s)	815
BstNSI	RCATGY	2 cut(s)	106, 781
BstSCI	CCNGG	1 cut(s)	813
BstUI	CGCG	3 cut(s)	58, 126, 537
BstV1I	GCAGC	3 cut(s)	385, 515, 947
BstX2I	RGATCY	1 cut(s)	810
BstYI	RGATCY	1 cut(s)	810
Bsu36I	CCTNAGG	1 cut(s)	927
BsuI	GTATCC	1 cut(s)	520
BtgI	CCRYGG	2 cut(s)	306, 967
BtgZI	GCGATG	1 cut(s)	552
BtrI	CACGTC	1 cut(s)	877
BtsCI	GGATG	4 cut(s)	156, 442, 898, 989
BtsIMutI	CAGTG	1 cut(s)	241
Cac8I	GCNNGC	4 cut(s)	58, 104, 631, 855
CaiI	CAGNNNCTG	2 cut(s)	806, 1028
CfoI	GCGC	3 cut(s)	58, 60, 76
Cfr13I	GGNCC	1 cut(s)	817
Csp6I	GTAC	1 cut(s)	612
CviAII	CATG	6 cut(s)	103, 307, 383, 778, 1013, 1043
CviQI	GTAC	1 cut(s)	612
DdeI	CTNAG	6 cut(s)	233, 266, 568, 651, 807, 927
DpnI	GATC	3 cut(s)	198, 657, 812
DpnII	GATC	3 cut(s)	196, 655, 810
EciI	GGCGGA	1 cut(s)	273
Eco130I	CCWWGG	1 cut(s)	306
Eco47I	GGWCC	1 cut(s)	817
Eco57I	CTGAAG	1 cut(s)	431
Eco81I	CCTNAGG	1 cut(s)	927
Eco88I	CYCGRG	1 cut(s)	759
EcoRII	CCWGG	1 cut(s)	813
EcoT14I	CCWWGG	1 cut(s)	306
ErhI	CCWWGG	1 cut(s)	306
FaeI	CATG	6 cut(s)	106, 310, 386, 781, 1016, 1046
FaqI	GGGAC	1 cut(s)	887
FatI	CATG	6 cut(s)	102, 306, 382, 777, 1012, 1042
Fnu4HI	GCNGC	4 cut(s)	399, 504, 933, 936
FokI	GGATG	4 cut(s)	163, 429, 905, 976
Fsp4HI	GCNGC	4 cut(s)	399, 504, 933, 936
FspBI	CTAG	2 cut(s)	165, 858
GlaI	GCGC	3 cut(s)	57, 59, 75
GluI	GCNGC	4 cut(s)	399, 504, 933, 936
GsaI	CCCAGC	3 cut(s)	45, 705, 1035
HhaI	GCGC	3 cut(s)	58, 60, 76
Hin1II	CATG	6 cut(s)	106, 310, 386, 781, 1016, 1046
Hin6I	GCGC	3 cut(s)	56, 58, 74
HinP1I	GCGC	3 cut(s)	56, 58, 74
HincII	GTYRAC	1 cut(s)	948
HindII	GTYRAC	1 cut(s)	948
HinfI	GANTC	7 cut(s)	25, 161, 430, 482, 515, 605, 1025
HpaI	GTTAAC	1 cut(s)	948
HphI	GGTGA	1 cut(s)	1012
Hpy166II	GTNNAC	1 cut(s)	948
Hpy188I	TCNGA	6 cut(s)	30, 411, 520, 652, 770, 942
Hpy8I	GTNNAC	1 cut(s)	948
HpyAV	CCTTC	2 cut(s)	248, 406
HpyCH4III	ACNGT	2 cut(s)	355, 616
HpyCH4IV	ACGT	2 cut(s)	588, 876
HpyCH4V	TGCA	7 cut(s)	9, 102, 106, 208, 282, 503, 977
HpyF10VI	GCNNNNNNNGC	3 cut(s)	560, 635, 1028
HpyF3I	CTNAG	6 cut(s)	233, 266, 568, 651, 807, 927
HpySE526I	ACGT	2 cut(s)	588, 876
Hsp92II	CATG	6 cut(s)	106, 310, 386, 781, 1016, 1046
HspAI	GCGC	3 cut(s)	56, 58, 74
KspAI	GTTAAC	1 cut(s)	948
Kzo9I	GATC	3 cut(s)	196, 655, 810
LmnI	GCTCC	1 cut(s)	415
Lsp1109I	GCAGC	3 cut(s)	385, 515, 947
LweI	GCATC	4 cut(s)	427, 451, 490, 883
MaeI	CTAG	2 cut(s)	165, 858
MaeII	ACGT	2 cut(s)	588, 876
MalI	GATC	3 cut(s)	198, 657, 812
MboI	GATC	3 cut(s)	196, 655, 810
MboII	GAAGA	3 cut(s)	845, 929, 932
MflI	RGATCY	1 cut(s)	810
MhlI	GDGCHC	1 cut(s)	855
MluCI	AATT	7 cut(s)	128, 369, 639, 690, 788, 836, 842
MlyI	GAGTC	1 cut(s)	1034
MmeI	TCCRAC	1 cut(s)	580
MseI	TTAA	3 cut(s)	132, 146, 947
MslI	CAYNNNNRTG	2 cut(s)	713, 998
MspR9I	CCNGG	1 cut(s)	815
MvaI	CCWGG	1 cut(s)	815
MvnI	CGCG	3 cut(s)	58, 126, 537
MwoI	GCNNNNNNNGC	3 cut(s)	560, 635, 1028
NcoI	CCATGG	1 cut(s)	306
NdeII	GATC	3 cut(s)	196, 655, 810
NlaIII	CATG	6 cut(s)	106, 310, 386, 781, 1016, 1046
NlaIV	GGNNCC	4 cut(s)	122, 187, 882, 1007
NspI	RCATGY	2 cut(s)	106, 781
PaeI	GCATGC	1 cut(s)	106
PauI	GCGCGC	1 cut(s)	56
PfeI	GAWTC	6 cut(s)	25, 161, 430, 482, 515, 605
PfoI	TCCNGGA	1 cut(s)	813
PkrI	GCNGC	4 cut(s)	400, 505, 934, 937
PleI	GAGTC	1 cut(s)	1033
PpsI	GAGTC	1 cut(s)	1033
Psp6I	CCWGG	1 cut(s)	813
PspFI	CCCAGC	3 cut(s)	41, 701, 1031
PspGI	CCWGG	1 cut(s)	813
PspN4I	GGNNCC	4 cut(s)	122, 187, 882, 1007
PspPI	GGNCC	1 cut(s)	817
PstNI	CAGNNNCTG	2 cut(s)	806, 1028
PsuI	RGATCY	1 cut(s)	810
PteI	GCGCGC	1 cut(s)	56
RsaI	GTAC	1 cut(s)	613
RsaNI	GTAC	1 cut(s)	612
RseI	CAYNNNNRTG	2 cut(s)	713, 998
SaqAI	TTAA	3 cut(s)	132, 146, 947
SatI	GCNGC	4 cut(s)	399, 504, 933, 936
Sau3AI	GATC	3 cut(s)	196, 655, 810
Sau96I	GGNCC	1 cut(s)	817
SchI	GAGTC	1 cut(s)	1034
ScrFI	CCNGG	1 cut(s)	815
SduI	GDGCHC	1 cut(s)	855
SfaNI	GCATC	4 cut(s)	427, 451, 490, 883
SinI	GGWCC	1 cut(s)	817
SmiMI	CAYNNNNRTG	2 cut(s)	713, 998
SphI	GCATGC	1 cut(s)	106
Sse9I	AATT	7 cut(s)	128, 369, 639, 690, 788, 836, 842
SsiI	CCGC	5 cut(s)	124, 258, 535, 775, 932
SspMI	CTAG	2 cut(s)	165, 858
StyD4I	CCNGG	1 cut(s)	813
StyI	CCWWGG	1 cut(s)	306
TaaI	ACNGT	2 cut(s)	355, 616
TaiI	ACGT	2 cut(s)	591, 879
TaqI	TCGA	1 cut(s)	670
TaqII	GACCGA	1 cut(s)	188
TasI	AATT	7 cut(s)	128, 369, 639, 690, 788, 836, 842
TauI	GCSGC	1 cut(s)	935
TfiI	GAWTC	6 cut(s)	25, 161, 430, 482, 515, 605
Tru1I	TTAA	3 cut(s)	132, 146, 947
Tru9I	TTAA	3 cut(s)	132, 146, 947
TscAI	CASTG	1 cut(s)	241
TseI	GCWGC	3 cut(s)	398, 503, 935
TspDTI	ATGAA	2 cut(s)	452, 846
TspRI	CASTG	1 cut(s)	241
VpaK11BI	GGWCC	1 cut(s)	817
XapI	RAATTY	3 cut(s)	128, 369, 836
XceI	RCATGY	2 cut(s)	106, 781
XspI	CTAG	2 cut(s)	165, 858

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.