Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0005995

Physical Location & Seq

Genomic Coordinates Reverse (-)

26129016 .. 26131604

Gene Structure 2589 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g25970.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGATCTGCAAAAGTTACATTAGGAGTGTGATTGTTCAAGCCTGGAATATCGTAACGTCTACGAAGGCAAGGGTGCATTTCAACAATACTGATAGAATTTGCGTGCTTGCCAATTCGTGGAACCGAGCATTTAGGTCGAGTTTGAGGATGATGGTTGATACAGGTGCGACGGATGAACAAGGATCCGTTTTTGATGTGCTGCCTGACAAAGATGAGGATGGTGAATATACCAGTGGAGGGTGCAAAAGCGAAGGTGGAGAACTGAGTTGCGGTTATTCGAGTTTCAGGGGAAAAAGAGCAACTATGGAGGATTTTTATGATGTTAAAATGTCCAAAATTGAAGGGCAAACGGTCTGCCTGTTTGGAATTTTCGATGGTCACGGCGGTTCTCGTGCTGCTCAGTATTTGAAGGAGCATCTATTTGAGAATCTCATGAAGCATCCACAATTCATGACAGACACTAAGTTAGCTATTAGTGAATCGTATCAACAGACCGATGCAGACTTTTTGGATTCTGAAAGAGATATATACCGGGATGATGGTTCTACTGCTTCAACAGCAGTCTTGGTTGGTAACCATCTATATGTTGCTAATGTTGGAGATTCACGTACAGTAATATCAAAGGCAGGAAAAGCTATTGCTTTATCCGAGGATCATAAACCAAATCGAAGTGATGAGAGGAAGAGAATTGAGAGTGCTGGGGGTTTTGTAATGTGGACAGGCACTTGGAGAGTAGGCGGTGTGCTGGCCATGTCTCGGGCTTTTGGGAACCGCATGTTGAAGCAATATGTTGTTGCAGAACCTGAGATCGAGACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008150 GO:0009846 GO:0009856 GO:0022414 GO:0032501 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0051704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

273

Amino Acids

30.27

Weight (kDa)

5.91

Isoelectric Point (pI)

39.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53140 AT5G53140
fragaria_vesca	FvH4_7g31190
malus_domestica	MD01G1216600.v1.1 MD07G1286600.v1.1
prunus_persica	Prupe.2G308600_v2.0.a1 Prupe.2G308600_v2.0.a1 Prupe.2G308600_v2.0.a1 Prupe.2G308600_v2.0.a1 Prupe.2G308600_v2.0.a1 Prupe.2G308600_v2.0.a1 Prupe.2G308600_v2.0.a1 Prupe.2G308600_v2.0.a1
pyrus_communis	pycom07g25970
rosa_chinensis	RchiOBHm_Chr1g0380251
rosa_laevigata	RLG00000026315
rosa_multiflora	Rmu_sc0001232.1_g000029
rosa_roxburghii	Rroxscaffold_4G00279540
rosa_rugosa	Rorug01G0419300 Rorug01G0419400 Rorug01G0419500
rosa_samantha	Rh1AG444100 Rh1BG399200 Rh1CG412600 Rh1DG429700
rosa_wichuraiana	Rw1G038570 Rw1G038640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	117
AccI	GTMKAC	1 cut(s)	59
AciI	CCGC	4 cut(s)	270, 384, 738, 772
AclWI	GGATC	3 cut(s)	177, 190, 660
AcoI	YGGCCR	1 cut(s)	747
AcsI	RAATTY	2 cut(s)	96, 366
AfaI	GTAC	1 cut(s)	610
AfiI	CCNNNNNNNGG	3 cut(s)	117, 237, 756
AgsI	TTSAA	6 cut(s)	38, 82, 341, 409, 555, 781
AjnI	CCWGG	1 cut(s)	41
AluBI	AGCT	2 cut(s)	470, 635
AluI	AGCT	2 cut(s)	470, 635
Alw26I	GTCTC	2 cut(s)	759, 806
AlwI	GGATC	3 cut(s)	177, 190, 660
AlwNI	CAGNNNCTG	1 cut(s)	803
Ama87I	CYCGRG	1 cut(s)	756
AoxI	GGCC	1 cut(s)	747
ApeKI	GCWGC	2 cut(s)	199, 395
ApoI	RAATTY	2 cut(s)	96, 366
AsuC2I	CCSGG	1 cut(s)	533
AsuHPI	GGTGA	1 cut(s)	233
AvaI	CYCGRG	1 cut(s)	756
BalI	TGGCCA	1 cut(s)	749
BamHI	GGATCC	1 cut(s)	182
BauI	CACGAG	1 cut(s)	390
BbvI	GCAGC	2 cut(s)	186, 382
BccI	CCATC	5 cut(s)	145, 212, 368, 533, 585
BceAI	ACGGC	1 cut(s)	397
BcgI	CGANNNNNNTGC	2 cut(s)	117, 151
BciT130I	CCWGG	1 cut(s)	43
BcnI	CCSGG	1 cut(s)	533
BcoDI	GTCTC	2 cut(s)	759, 806
BfaI	CTAG	1 cut(s)	817
BisI	GCNGC	2 cut(s)	200, 396
BlsI	GCNGC	2 cut(s)	201, 397
Bme1390I	CCNGG	2 cut(s)	43, 533
BmeT110I	CYCGRG	1 cut(s)	756
BmiI	GGNNCC	3 cut(s)	122, 184, 770
BmrFI	CCNGG	2 cut(s)	43, 533
BmsI	GCATC	3 cut(s)	424, 448, 487
BpuMI	CCSGG	1 cut(s)	533
BsaAI	YACGTR	1 cut(s)	608
BsaI	GGTCTC	1 cut(s)	806
BsaJI	CCNNGG	1 cut(s)	648
Bsc4I	CCNNNNNNNGG	3 cut(s)	117, 237, 756
Bse1I	ACTGG	1 cut(s)	231
BseBI	CCWGG	1 cut(s)	43
BseDI	CCNNGG	1 cut(s)	648
BseGI	GGATG	5 cut(s)	153, 178, 223, 439, 541
BseLI	CCNNNNNNNGG	3 cut(s)	117, 237, 756
BseMII	CTCAG	3 cut(s)	254, 413, 795
BseNI	ACTGG	1 cut(s)	231
BseXI	GCAGC	2 cut(s)	186, 382
BseYI	CCCAGC	1 cut(s)	698
BshFI	GGCC	1 cut(s)	749
BsiHKCI	CYCGRG	1 cut(s)	756
BsiSI	CCGG	1 cut(s)	532
BslI	CCNNNNNNNGG	3 cut(s)	117, 237, 756
BsmAI	GTCTC	2 cut(s)	759, 806
BsnI	GGCC	1 cut(s)	749
Bso31I	GGTCTC	1 cut(s)	806
BsoBI	CYCGRG	1 cut(s)	756
Bsp143I	GATC	4 cut(s)	3, 182, 652, 807
BspACI	CCGC	4 cut(s)	270, 384, 738, 772
BspANI	GGCC	1 cut(s)	749
BspCNI	CTCAG	3 cut(s)	255, 412, 796
BspHI	TCATGA	2 cut(s)	432, 450
BspLI	GGNNCC	3 cut(s)	122, 184, 770
BspPI	GGATC	3 cut(s)	177, 190, 660
BspTNI	GGTCTC	1 cut(s)	806
BsrI	ACTGG	1 cut(s)	231
BssECI	CCNNGG	1 cut(s)	648
BssMI	GATC	4 cut(s)	3, 182, 652, 807
BssSI	CACGAG	1 cut(s)	390
Bst2BI	CACGAG	1 cut(s)	390
Bst2UI	CCWGG	1 cut(s)	43
Bst4CI	ACNGT	2 cut(s)	352, 613
Bst6I	CTCTTC	1 cut(s)	677
BstBAI	YACGTR	1 cut(s)	608
BstC8I	GCNNGC	3 cut(s)	104, 108, 747
BstDEI	CTNAG	4 cut(s)	263, 399, 462, 804
BstEII	GGTNACC	1 cut(s)	572
BstF5I	GGATG	5 cut(s)	153, 178, 223, 439, 541
BstKTI	GATC	4 cut(s)	6, 185, 655, 810
BstMAI	GTCTC	2 cut(s)	759, 806
BstMBI	GATC	4 cut(s)	3, 182, 652, 807
BstMWI	GCNNNNNNNGC	2 cut(s)	557, 632
BstNI	CCWGG	1 cut(s)	43
BstNSI	RCATGY	1 cut(s)	778
BstPI	GGTNACC	1 cut(s)	572
BstSCI	CCNGG	2 cut(s)	41, 531
BstV1I	GCAGC	2 cut(s)	186, 382
BstX2I	RGATCY	1 cut(s)	182
BstYI	RGATCY	1 cut(s)	182
BsuRI	GGCC	1 cut(s)	749
BtsCI	GGATG	5 cut(s)	153, 178, 223, 439, 541
BtsIMutI	CAGTG	1 cut(s)	238
Cac8I	GCNNGC	3 cut(s)	104, 108, 747
CaiI	CAGNNNCTG	1 cut(s)	803
CciI	TCATGA	2 cut(s)	432, 450
Csp6I	GTAC	1 cut(s)	609
CviAII	CATG	4 cut(s)	433, 451, 751, 775
CviJI	RGCY	5 cut(s)	41, 470, 635, 749, 761
CviKI_1	RGCY	5 cut(s)	41, 470, 635, 749, 761
CviQI	GTAC	1 cut(s)	609
DdeI	CTNAG	4 cut(s)	263, 399, 462, 804
DpnI	GATC	4 cut(s)	5, 184, 654, 809
DpnII	GATC	4 cut(s)	3, 182, 652, 807
EaeI	YGGCCR	1 cut(s)	747
Eam1104I	CTCTTC	1 cut(s)	677
EarI	CTCTTC	1 cut(s)	677
Eco31I	GGTCTC	1 cut(s)	806
Eco88I	CYCGRG	1 cut(s)	756
Eco91I	GGTNACC	1 cut(s)	572
EcoO65I	GGTNACC	1 cut(s)	572
EcoRII	CCWGG	1 cut(s)	41
FaeI	CATG	4 cut(s)	436, 454, 754, 778
FatI	CATG	4 cut(s)	432, 450, 750, 774
FblI	GTMKAC	1 cut(s)	59
Fnu4HI	GCNGC	2 cut(s)	200, 396
FokI	GGATG	5 cut(s)	160, 185, 230, 426, 548
Fsp4HI	GCNGC	2 cut(s)	200, 396
FspBI	CTAG	1 cut(s)	817
GluI	GCNGC	2 cut(s)	200, 396
GsaI	CCCAGC	1 cut(s)	702
HaeIII	GGCC	1 cut(s)	749
HapII	CCGG	1 cut(s)	532
Hin1II	CATG	4 cut(s)	436, 454, 754, 778
HinfI	GANTC	4 cut(s)	427, 479, 512, 602
HpaII	CCGG	1 cut(s)	532
HphI	GGTGA	1 cut(s)	233
Hpy166II	GTNNAC	2 cut(s)	60, 717
Hpy188I	TCNGA	2 cut(s)	517, 649
Hpy188III	TCNNGA	3 cut(s)	433, 451, 811
Hpy8I	GTNNAC	2 cut(s)	60, 717
Hpy99I	CGWCG	1 cut(s)	172
HpyAV	CCTTC	4 cut(s)	58, 245, 335, 403
HpyCH4III	ACNGT	2 cut(s)	352, 613
HpyCH4IV	ACGT	2 cut(s)	56, 607
HpyCH4V	TGCA	5 cut(s)	9, 76, 243, 500, 797
HpyF10VI	GCNNNNNNNGC	2 cut(s)	557, 632
HpyF3I	CTNAG	4 cut(s)	263, 399, 462, 804
HpySE526I	ACGT	2 cut(s)	56, 607
Hsp92II	CATG	4 cut(s)	436, 454, 754, 778
Kzo9I	GATC	4 cut(s)	3, 182, 652, 807
LmnI	GCTCC	1 cut(s)	412
Lsp1109I	GCAGC	2 cut(s)	186, 382
LweI	GCATC	3 cut(s)	424, 448, 487
MaeI	CTAG	1 cut(s)	817
MaeII	ACGT	2 cut(s)	56, 607
MaeIII	GTNAC	4 cut(s)	14, 52, 377, 572
MalI	GATC	4 cut(s)	5, 184, 654, 809
MboI	GATC	4 cut(s)	3, 182, 652, 807
MboII	GAAGA	1 cut(s)	694
MflI	RGATCY	1 cut(s)	182
MlsI	TGGCCA	1 cut(s)	749
MluCI	AATT	6 cut(s)	96, 112, 336, 366, 446, 687
MluNI	TGGCCA	1 cut(s)	749
MmeI	TCCRAC	1 cut(s)	577
MnlI	CCTC	6 cut(s)	138, 208, 230, 301, 643, 672
Mox20I	TGGCCA	1 cut(s)	749
MscI	TGGCCA	1 cut(s)	749
MseI	TTAA	1 cut(s)	324
MslI	CAYNNNNRTG	1 cut(s)	582
Msp20I	TGGCCA	1 cut(s)	749
MspI	CCGG	1 cut(s)	532
MspR9I	CCNGG	2 cut(s)	43, 533
MvaI	CCWGG	1 cut(s)	43
MwoI	GCNNNNNNNGC	2 cut(s)	557, 632
NciI	CCSGG	1 cut(s)	533
NdeII	GATC	4 cut(s)	3, 182, 652, 807
NlaIII	CATG	4 cut(s)	436, 454, 754, 778
NlaIV	GGNNCC	3 cut(s)	122, 184, 770
NmuCI	GTSAC	1 cut(s)	377
NspI	RCATGY	1 cut(s)	778
PagI	TCATGA	2 cut(s)	432, 450
PfeI	GAWTC	4 cut(s)	427, 479, 512, 602
PflMI	CCANNNNNTGG	1 cut(s)	117
PkrI	GCNGC	2 cut(s)	201, 397
Ppu21I	YACGTR	1 cut(s)	608
Psp6I	CCWGG	1 cut(s)	41
PspEI	GGTNACC	1 cut(s)	572
PspFI	CCCAGC	1 cut(s)	698
PspGI	CCWGG	1 cut(s)	41
PspN4I	GGNNCC	3 cut(s)	122, 184, 770
PstNI	CAGNNNCTG	1 cut(s)	803
PsuI	RGATCY	1 cut(s)	182
RsaI	GTAC	1 cut(s)	610
RsaNI	GTAC	1 cut(s)	609
RseI	CAYNNNNRTG	1 cut(s)	582
SaqAI	TTAA	1 cut(s)	324
SatI	GCNGC	2 cut(s)	200, 396
Sau3AI	GATC	4 cut(s)	3, 182, 652, 807
ScrFI	CCNGG	2 cut(s)	43, 533
SetI	ASST	9 cut(s)	59, 137, 166, 256, 472, 610, 637, 805, 818
SfaNI	GCATC	3 cut(s)	424, 448, 487
SmiMI	CAYNNNNRTG	1 cut(s)	582
Sse9I	AATT	6 cut(s)	96, 112, 336, 366, 446, 687
SsiI	CCGC	4 cut(s)	270, 384, 738, 772
SspMI	CTAG	1 cut(s)	817
StyD4I	CCNGG	2 cut(s)	41, 531
TaaI	ACNGT	2 cut(s)	352, 613
TaiI	ACGT	2 cut(s)	59, 610
TaqI	TCGA	5 cut(s)	137, 278, 372, 667, 810
TaqII	GACCGA	1 cut(s)	509
TasI	AATT	6 cut(s)	96, 112, 336, 366, 446, 687
TfiI	GAWTC	4 cut(s)	427, 479, 512, 602
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TscAI	CASTG	1 cut(s)	238
TseFI	GTSAC	1 cut(s)	377
TseI	GCWGC	2 cut(s)	199, 395
Tsp45I	GTSAC	1 cut(s)	377
TspDTI	ATGAA	3 cut(s)	189, 439, 449
TspGWI	ACGGA	2 cut(s)	175, 185
TspRI	CASTG	1 cut(s)	238
Van91I	CCANNNNNTGG	1 cut(s)	117
XapI	RAATTY	2 cut(s)	96, 366
XceI	RCATGY	1 cut(s)	778
XmiI	GTMKAC	1 cut(s)	59
XspI	CTAG	1 cut(s)	817

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.