Rh1CG412600

phosphatase 2c

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0005995
Physical Location & Seq
Reverse (-)
67533642 .. 67538142
4501 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG412600.1

Sequence Viewer

Length: 1095 bp
ATGATATGCAAGAGTGGGATAAGGAATCTGATTGTTCAAGCTGGGAATATAGTAGCGTGCACAAAAACTGGGGCGTATTTGAACAACATTGGGAGAGTTTGCATGCAAACCTCTTTGGGGAACCGCGAATTTAAGACAACGAGTTTAAGGATGATGGTTGATTCTAGTGCGACCGAGAAACAGGGTTCCATTGTTGATGTCTTATTGCAGAAAGATGACGAGGGTGGATATATCAGTGGAGGCTGGAAAAGTGAAGGCGGAAAACTTAGCTGTGGCTATTGCAGTTTTAGGGGAAAAAGAGCCACCATGGAGGATTTTTATGATATAAAAACTTCCAAGATTGATGGGCAAACAGTTTGCCTCTTTGGAATTTTTGATGGTCATGGTGGTTCTCGTGCTGCTGAATATCTGAAGGAGCATCTATTTGAGAATCTCATGAAGCATCCAAACTTTATCACAGACACCAAGTTGGCTATTAGTGAATCATATCAACAAACTGATGCAGCTTTTTTGGATTCTGAAAGGGATACATATCGTGATGATGGTTCTACTGCTTCAACAGCAGTCTTAGTGGGTAACCATCTATACGTTGCCAATGTTGGAGATTCTCGTACAGTAATATCAAAAGCAGGCAAAGCAATTCCTCTATCTGAGGATCATAAACCAAATCGAACTGATGAGAGAAAGAGAATTGAAAATGCTGGGGGCATTGTAATGTGGGCAGGAACTTGGAGGGTAGGAGGTGTTTTGGCTATGTCTCGGGCTTTCGGAAACCGTATGTTGAAGCAATTTGTTGTTGCAGAACCTGAAATCCAGGACCAAGTGATAGATGAAGAATTTGAATTGCTGGTGCTCGCTAGTGATGGGCTGTGGGACGTGGTGCCAAATGAGGTACAACTGACCTGCCCTAATTCTAATTATCACACACACTCACAGGATGCTGTTTCACTTGCCCGAACAGAAGAAGAACCCGAGGCGGCAGCTCGGAAGTTAACGGGAACTGCATTTGCCCGTGGTAGTGCAGACAATATAACATCCATTGTGGTGAGGTTCCACCATGACAAAGCAGAGTCTGCTGGGGCTAACCATGATTAG

Protein Analysis

364

Amino Acids

39.83

Weight (kDa)

5.64

Isoelectric Point (pI)

34.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 91 - 344 4.4e-59 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 911
AccB1I GGYRCC 1 cut(s) 880
AccII CGCG 1 cut(s) 126
AciI CCGC 3 cut(s) 124, 258, 977
AclWI GGATC 1 cut(s) 663
AcsI RAATTY 3 cut(s) 128, 369, 836
AcuI CTGAAG 1 cut(s) 431
AfaI GTAC 2 cut(s) 613, 894
AfiI CCNNNNNNNGG 1 cut(s) 117
AgsI TTSAA 6 cut(s) 38, 82, 558, 695, 784, 842
AjiI CACGTC 1 cut(s) 877
AjnI CCWGG 1 cut(s) 813
AloI GAACNNNNNNTCC 2 cut(s) 795, 827
AluBI AGCT 4 cut(s) 41, 270, 506, 983
AluI AGCT 4 cut(s) 41, 270, 506, 983
Alw21I GWGCWC 2 cut(s) 62, 855
Alw26I GTCTC 1 cut(s) 762
Alw44I GTGCAC 1 cut(s) 58
AlwI GGATC 1 cut(s) 663
AlwNI CAGNNNCTG 2 cut(s) 806, 1073
Ama87I CYCGRG 2 cut(s) 759, 971
ApaLI GTGCAC 1 cut(s) 58
ApeKI GCWGC 3 cut(s) 398, 503, 980
ApoI RAATTY 3 cut(s) 128, 369, 836
AspS9I GGNCC 1 cut(s) 817
AsuHPI GGTGA 1 cut(s) 1057
AvaI CYCGRG 2 cut(s) 759, 971
AvaII GGWCC 1 cut(s) 817
BaeGI GKGCMC 1 cut(s) 62
BanI GGYRCC 1 cut(s) 880
BauI CACGAG 1 cut(s) 393
Bbv12I GWGCWC 2 cut(s) 62, 855
BbvI GCAGC 3 cut(s) 385, 515, 992
BccI CCATC 6 cut(s) 148, 338, 371, 536, 588, 857
BciT130I CCWGG 1 cut(s) 815
BciVI GTATCC 1 cut(s) 520
BcoDI GTCTC 1 cut(s) 762
BfaI CTAG 2 cut(s) 165, 858
BfuAI ACCTGC 1 cut(s) 911
BfuI GTATCC 1 cut(s) 520
BisI GCNGC 4 cut(s) 399, 504, 978, 981
BlsI GCNGC 4 cut(s) 400, 505, 979, 982
Bme1390I CCNGG 1 cut(s) 815
Bme18I GGWCC 1 cut(s) 817
BmeT110I CYCGRG 2 cut(s) 759, 971
BmgBI CACGTC 1 cut(s) 877
BmgT120I GGNCC 1 cut(s) 817
BmiI GGNNCC 4 cut(s) 122, 187, 882, 1052
BmrFI CCNGG 1 cut(s) 815
BmrI ACTGGG 1 cut(s) 78
BmsI GCATC 4 cut(s) 427, 451, 490, 928
BmuI ACTGGG 1 cut(s) 78
BsaBI GATNNNNATC 1 cut(s) 531
BsaJI CCNNGG 3 cut(s) 306, 972, 1012
Bsc4I CCNNNNNNNGG 1 cut(s) 117
Bse1I ACTGG 1 cut(s) 73
Bse8I GATNNNNATC 1 cut(s) 531
BseBI CCWGG 1 cut(s) 815
BseDI CCNNGG 3 cut(s) 306, 972, 1012
BseGI GGATG 4 cut(s) 156, 442, 943, 1034
BseJI GATNNNNATC 1 cut(s) 531
BseLI CCNNNNNNNGG 1 cut(s) 117
BseMII CTCAG 1 cut(s) 642
BseNI ACTGG 1 cut(s) 73
BseSI GKGCMC 1 cut(s) 62
BseXI GCAGC 3 cut(s) 385, 515, 992
BseYI CCCAGC 3 cut(s) 41, 701, 1076
BsgI GTGCAG 1 cut(s) 1041
Bsh1236I CGCG 1 cut(s) 126
Bsh1285I CGRYCG 1 cut(s) 174
BshNI GGYRCC 1 cut(s) 880
BsiEI CGRYCG 1 cut(s) 174
BsiHKAI GWGCWC 2 cut(s) 62, 855
BsiHKCI CYCGRG 2 cut(s) 759, 971
BslFI GGGAC 1 cut(s) 887
BslI CCNNNNNNNGG 1 cut(s) 117
BsmAI GTCTC 1 cut(s) 762
BsmFI GGGAC 1 cut(s) 887
BsoBI CYCGRG 2 cut(s) 759, 971
Bsp1286I GDGCHC 2 cut(s) 62, 855
Bsp143I GATC 1 cut(s) 655
Bsp19I CCATGG 1 cut(s) 306
BspACI CCGC 3 cut(s) 124, 258, 977
BspCNI CTCAG 1 cut(s) 643
BspFNI CGCG 1 cut(s) 126
BspHI TCATGA 1 cut(s) 435
BspLI GGNNCC 4 cut(s) 122, 187, 882, 1052
BspMI ACCTGC 1 cut(s) 911
BspPI GGATC 1 cut(s) 663
BspT107I GGYRCC 1 cut(s) 880
BsrI ACTGG 1 cut(s) 73
BssECI CCNNGG 3 cut(s) 306, 972, 1012
BssMI GATC 1 cut(s) 655
BssSI CACGAG 1 cut(s) 393
BssT1I CCWWGG 1 cut(s) 306
Bst2BI CACGAG 1 cut(s) 393
Bst2UI CCWGG 1 cut(s) 815
Bst4CI ACNGT 3 cut(s) 355, 616, 776
BstAPI GCANNNNNTGC 1 cut(s) 1073
BstC8I GCNNGC 4 cut(s) 58, 104, 631, 855
BstDEI CTNAG 3 cut(s) 266, 568, 651
BstDSI CCRYGG 2 cut(s) 306, 1012
BstEII GGTNACC 1 cut(s) 575
BstF5I GGATG 4 cut(s) 156, 442, 943, 1034
BstFNI CGCG 1 cut(s) 126
BstKTI GATC 1 cut(s) 658
BstMAI GTCTC 1 cut(s) 762
BstMBI GATC 1 cut(s) 655
BstMCI CGRYCG 1 cut(s) 174
BstMWI GCNNNNNNNGC 3 cut(s) 560, 635, 1073
BstNI CCWGG 1 cut(s) 815
BstNSI RCATGY 1 cut(s) 106
BstPI GGTNACC 1 cut(s) 575
BstSCI CCNGG 1 cut(s) 813
BstSLI GKGCMC 1 cut(s) 62
BstUI CGCG 1 cut(s) 126
BstV1I GCAGC 3 cut(s) 385, 515, 992
BsuI GTATCC 1 cut(s) 520
BtgI CCRYGG 2 cut(s) 306, 1012
BtrI CACGTC 1 cut(s) 877
BtsCI GGATG 4 cut(s) 156, 442, 943, 1034
BtsIMutI CAGTG 1 cut(s) 241
BveI ACCTGC 1 cut(s) 911
Cac8I GCNNGC 4 cut(s) 58, 104, 631, 855
CaiI CAGNNNCTG 2 cut(s) 806, 1073
CciI TCATGA 1 cut(s) 435
Cfr13I GGNCC 1 cut(s) 817
Csp6I GTAC 2 cut(s) 612, 893
CviAII CATG 6 cut(s) 103, 307, 383, 436, 1058, 1088
CviQI GTAC 2 cut(s) 612, 893
DdeI CTNAG 3 cut(s) 266, 568, 651
DpnI GATC 1 cut(s) 657
DpnII GATC 1 cut(s) 655
EciI GGCGGA 1 cut(s) 273
Eco130I CCWWGG 1 cut(s) 306
Eco47I GGWCC 1 cut(s) 817
Eco57I CTGAAG 1 cut(s) 431
Eco88I CYCGRG 2 cut(s) 759, 971
Eco91I GGTNACC 1 cut(s) 575
EcoO65I GGTNACC 1 cut(s) 575
EcoRII CCWGG 1 cut(s) 813
EcoT14I CCWWGG 1 cut(s) 306
ErhI CCWWGG 1 cut(s) 306
FaeI CATG 6 cut(s) 106, 310, 386, 439, 1061, 1091
FaqI GGGAC 1 cut(s) 887
FatI CATG 6 cut(s) 102, 306, 382, 435, 1057, 1087
Fnu4HI GCNGC 4 cut(s) 399, 504, 978, 981
FokI GGATG 4 cut(s) 163, 429, 950, 1021
Fsp4HI GCNGC 4 cut(s) 399, 504, 978, 981
FspBI CTAG 2 cut(s) 165, 858
GluI GCNGC 4 cut(s) 399, 504, 978, 981
GsaI CCCAGC 3 cut(s) 45, 705, 1080
Hin1II CATG 6 cut(s) 106, 310, 386, 439, 1061, 1091
HincII GTYRAC 1 cut(s) 993
HindII GTYRAC 1 cut(s) 993
HinfI GANTC 7 cut(s) 25, 161, 430, 482, 515, 605, 1070
HpaI GTTAAC 1 cut(s) 993
HphI GGTGA 1 cut(s) 1057
Hpy166II GTNNAC 2 cut(s) 60, 993
Hpy188I TCNGA 6 cut(s) 30, 411, 520, 652, 770, 987
Hpy188III TCNNGA 2 cut(s) 436, 536
Hpy8I GTNNAC 2 cut(s) 60, 993
HpyAV CCTTC 2 cut(s) 248, 406
HpyCH4III ACNGT 3 cut(s) 355, 616, 776
HpyCH4IV ACGT 2 cut(s) 588, 876
HpyF10VI GCNNNNNNNGC 3 cut(s) 560, 635, 1073
HpyF3I CTNAG 3 cut(s) 266, 568, 651
HpySE526I ACGT 2 cut(s) 588, 876
Hsp92II CATG 6 cut(s) 106, 310, 386, 439, 1061, 1091
KspAI GTTAAC 1 cut(s) 993
Kzo9I GATC 1 cut(s) 655
LmnI GCTCC 1 cut(s) 415
Lsp1109I GCAGC 3 cut(s) 385, 515, 992
LweI GCATC 4 cut(s) 427, 451, 490, 928
MaeI CTAG 2 cut(s) 165, 858
MaeII ACGT 2 cut(s) 588, 876
MaeIII GTNAC 1 cut(s) 575
MalI GATC 1 cut(s) 657
MboI GATC 1 cut(s) 655
MboII GAAGA 3 cut(s) 845, 974, 977
MhlI GDGCHC 2 cut(s) 62, 855
MluCI AATT 9 cut(s) 128, 369, 639, 690, 788, 836, 842, 910, 916
MlyI GAGTC 1 cut(s) 1079
MmeI TCCRAC 1 cut(s) 580
MseI TTAA 3 cut(s) 132, 146, 992
MslI CAYNNNNRTG 2 cut(s) 713, 1043
MspR9I CCNGG 1 cut(s) 815
MvaI CCWGG 1 cut(s) 815
MvnI CGCG 1 cut(s) 126
MwoI GCNNNNNNNGC 3 cut(s) 560, 635, 1073
NcoI CCATGG 1 cut(s) 306
NdeII GATC 1 cut(s) 655
NlaIII CATG 6 cut(s) 106, 310, 386, 439, 1061, 1091
NlaIV GGNNCC 4 cut(s) 122, 187, 882, 1052
NspI RCATGY 1 cut(s) 106
PaeI GCATGC 1 cut(s) 106
PagI TCATGA 1 cut(s) 435
PfeI GAWTC 6 cut(s) 25, 161, 430, 482, 515, 605
PfoI TCCNGGA 1 cut(s) 813
PkrI GCNGC 4 cut(s) 400, 505, 979, 982
PleI GAGTC 1 cut(s) 1078
PpsI GAGTC 1 cut(s) 1078
Psp6I CCWGG 1 cut(s) 813
PspEI GGTNACC 1 cut(s) 575
PspFI CCCAGC 3 cut(s) 41, 701, 1076
PspGI CCWGG 1 cut(s) 813
PspN4I GGNNCC 4 cut(s) 122, 187, 882, 1052
PspPI GGNCC 1 cut(s) 817
PstNI CAGNNNCTG 2 cut(s) 806, 1073
RsaI GTAC 2 cut(s) 613, 894
RsaNI GTAC 2 cut(s) 612, 893
RseI CAYNNNNRTG 2 cut(s) 713, 1043
SaqAI TTAA 3 cut(s) 132, 146, 992
SatI GCNGC 4 cut(s) 399, 504, 978, 981
Sau3AI GATC 1 cut(s) 655
Sau96I GGNCC 1 cut(s) 817
SchI GAGTC 1 cut(s) 1079
ScrFI CCNGG 1 cut(s) 815
SduI GDGCHC 2 cut(s) 62, 855
SfaNI GCATC 4 cut(s) 427, 451, 490, 928
SinI GGWCC 1 cut(s) 817
SmiMI CAYNNNNRTG 2 cut(s) 713, 1043
SphI GCATGC 1 cut(s) 106
Sse9I AATT 9 cut(s) 128, 369, 639, 690, 788, 836, 842, 910, 916
SsiI CCGC 3 cut(s) 124, 258, 977
SspMI CTAG 2 cut(s) 165, 858
StyD4I CCNGG 1 cut(s) 813
StyI CCWWGG 1 cut(s) 306
TaaI ACNGT 3 cut(s) 355, 616, 776
TaiI ACGT 2 cut(s) 591, 879
TaqI TCGA 1 cut(s) 670
TaqII GACCGA 1 cut(s) 188
TasI AATT 9 cut(s) 128, 369, 639, 690, 788, 836, 842, 910, 916
TauI GCSGC 1 cut(s) 980
TfiI GAWTC 6 cut(s) 25, 161, 430, 482, 515, 605
Tru1I TTAA 3 cut(s) 132, 146, 992
Tru9I TTAA 3 cut(s) 132, 146, 992
TscAI CASTG 1 cut(s) 241
TseI GCWGC 3 cut(s) 398, 503, 980
TspDTI ATGAA 2 cut(s) 452, 846
TspRI CASTG 1 cut(s) 241
VneI GTGCAC 1 cut(s) 58
VpaK11BI GGWCC 1 cut(s) 817
XapI RAATTY 3 cut(s) 128, 369, 836
XceI RCATGY 1 cut(s) 106
XspI CTAG 2 cut(s) 165, 858
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.