Rh1BG399200

phosphatase 2c

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0005995
Physical Location & Seq
Reverse (-)
52300825 .. 52305495
4671 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG399200.1

Sequence Viewer

Length: 978 bp
ATGATATGCAAGAGTGGGATAAGGAATCTGATTGTTCAAGCTGGGAATATAGTAGCGTGCACAAAAACTGGGGCGTATTTGAACAACATTGGGAGAGTTTGCATGCAAACCTCTTTGGGGAACCGCGAATTTAAGACAACGAGTTTAAGGATGATGGTTGATTCTAGTGCGACTGAGAAACAGGGTTCCATTGTTGATGTCTTATTGCAGAAAGATGACGAGGGTGGATATATCAGTGGAGGCTGGAAAAGTGAAGGCGGAAAACTTAGCTGTGGCTATTGCAGTTTTAGGGGAAAAAGAGCCACCATGGAGGATTTTTATGATATAAAAACTTCCAAGATTGATGGGCAAACAGTTTGCCTCTTTGGAATTTTTGATGGTCATGGTGGTTCTCGTGCTGCTGAATATCTGAAGGAGCATCTATTTGAGAATCTCATGAAGCATCCAAACTTTATCACAGACACCAAGTTGGCTATTAGTGAATCATATCAACAAACTGATGCAGCTTTTTTGGATTCTGAAAGGGATACATATCGTGATGATGGTTCTACTGCTTCAACAGCAGTCTTAGTGGGTAACCATCTATACGTTGCCAATGTTGGAGATTCTCGTACAGTAATATCAAAAGCAGGCAAAGCAATTCCTCTATCTGAGGATCATAAACCAAATCGAACTGATGAGAGAAAGAGAATTGAAAATGCTGGGGGCATTGTAATGTGGGCAGGAACTTGGAGGGTAGGAGGTGTTTTGGCTATGTCTCGGGCTTTCGGAAACCGTATGTTGAAGCAATTTGTTGTTGCAGAACCTGAAATCCAGGACCAAGTGATAGATGAAGAATTTGAATTGCTGGTGCTCGCTAGTGATGGGCTGTGGGACGTGGTGCCAAATGAGGTACAACTGACCTGCCCTAATTCTAATTATCACATACACACTCACAGGTACTGGAATGTATCTGCTCTTTTATTCTCACACAGATGA

Protein Analysis

325

Amino Acids

36.02

Weight (kDa)

6.16

Isoelectric Point (pI)

33.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 91 - 297 3.8e-56 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 911
AccB1I GGYRCC 1 cut(s) 880
AccII CGCG 1 cut(s) 126
AciI CCGC 2 cut(s) 124, 258
AclWI GGATC 1 cut(s) 663
AcsI RAATTY 3 cut(s) 128, 369, 836
AcuI CTGAAG 1 cut(s) 431
AfaI GTAC 3 cut(s) 613, 894, 941
AfiI CCNNNNNNNGG 1 cut(s) 117
AgsI TTSAA 6 cut(s) 38, 82, 558, 695, 784, 842
AjiI CACGTC 1 cut(s) 877
AjnI CCWGG 1 cut(s) 813
AloI GAACNNNNNNTCC 2 cut(s) 795, 827
AluBI AGCT 3 cut(s) 41, 270, 506
AluI AGCT 3 cut(s) 41, 270, 506
Alw21I GWGCWC 2 cut(s) 62, 855
Alw26I GTCTC 1 cut(s) 762
Alw44I GTGCAC 1 cut(s) 58
AlwI GGATC 1 cut(s) 663
AlwNI CAGNNNCTG 2 cut(s) 806, 942
Ama87I CYCGRG 1 cut(s) 759
ApaLI GTGCAC 1 cut(s) 58
ApeKI GCWGC 2 cut(s) 398, 503
ApoI RAATTY 3 cut(s) 128, 369, 836
AspS9I GGNCC 1 cut(s) 817
AvaI CYCGRG 1 cut(s) 759
AvaII GGWCC 1 cut(s) 817
BaeGI GKGCMC 1 cut(s) 62
BanI GGYRCC 1 cut(s) 880
BauI CACGAG 1 cut(s) 393
Bbv12I GWGCWC 2 cut(s) 62, 855
BbvI GCAGC 2 cut(s) 385, 515
BccI CCATC 6 cut(s) 148, 338, 371, 536, 588, 857
BciT130I CCWGG 1 cut(s) 815
BciVI GTATCC 1 cut(s) 520
BcoDI GTCTC 1 cut(s) 762
BfaI CTAG 2 cut(s) 165, 858
BfuAI ACCTGC 1 cut(s) 911
BfuI GTATCC 1 cut(s) 520
BisI GCNGC 2 cut(s) 399, 504
BlsI GCNGC 2 cut(s) 400, 505
Bme1390I CCNGG 1 cut(s) 815
Bme18I GGWCC 1 cut(s) 817
BmeT110I CYCGRG 1 cut(s) 759
BmgBI CACGTC 1 cut(s) 877
BmgT120I GGNCC 1 cut(s) 817
BmiI GGNNCC 3 cut(s) 122, 187, 882
BmrFI CCNGG 1 cut(s) 815
BmrI ACTGGG 1 cut(s) 78
BmsI GCATC 3 cut(s) 427, 451, 490
BmuI ACTGGG 1 cut(s) 78
BsaBI GATNNNNATC 1 cut(s) 531
BsaJI CCNNGG 1 cut(s) 306
Bsc4I CCNNNNNNNGG 1 cut(s) 117
Bse1I ACTGG 2 cut(s) 73, 947
Bse8I GATNNNNATC 1 cut(s) 531
BseBI CCWGG 1 cut(s) 815
BseDI CCNNGG 1 cut(s) 306
BseGI GGATG 2 cut(s) 156, 442
BseJI GATNNNNATC 1 cut(s) 531
BseLI CCNNNNNNNGG 1 cut(s) 117
BseMII CTCAG 2 cut(s) 165, 642
BseNI ACTGG 2 cut(s) 73, 947
BseSI GKGCMC 1 cut(s) 62
BseXI GCAGC 2 cut(s) 385, 515
BseYI CCCAGC 2 cut(s) 41, 701
Bsh1236I CGCG 1 cut(s) 126
BshNI GGYRCC 1 cut(s) 880
BsiHKAI GWGCWC 2 cut(s) 62, 855
BsiHKCI CYCGRG 1 cut(s) 759
BslFI GGGAC 1 cut(s) 887
BslI CCNNNNNNNGG 1 cut(s) 117
BsmAI GTCTC 1 cut(s) 762
BsmFI GGGAC 1 cut(s) 887
BsoBI CYCGRG 1 cut(s) 759
Bsp1286I GDGCHC 2 cut(s) 62, 855
Bsp143I GATC 1 cut(s) 655
Bsp19I CCATGG 1 cut(s) 306
BspACI CCGC 2 cut(s) 124, 258
BspCNI CTCAG 2 cut(s) 166, 643
BspFNI CGCG 1 cut(s) 126
BspHI TCATGA 1 cut(s) 435
BspLI GGNNCC 3 cut(s) 122, 187, 882
BspMI ACCTGC 1 cut(s) 911
BspPI GGATC 1 cut(s) 663
BspT107I GGYRCC 1 cut(s) 880
BsrI ACTGG 2 cut(s) 73, 947
BssECI CCNNGG 1 cut(s) 306
BssMI GATC 1 cut(s) 655
BssSI CACGAG 1 cut(s) 393
BssT1I CCWWGG 1 cut(s) 306
Bst2BI CACGAG 1 cut(s) 393
Bst2UI CCWGG 1 cut(s) 815
Bst4CI ACNGT 3 cut(s) 355, 616, 776
BstC8I GCNNGC 4 cut(s) 58, 104, 631, 855
BstDEI CTNAG 4 cut(s) 174, 266, 568, 651
BstDSI CCRYGG 1 cut(s) 306
BstEII GGTNACC 1 cut(s) 575
BstF5I GGATG 2 cut(s) 156, 442
BstFNI CGCG 1 cut(s) 126
BstKTI GATC 1 cut(s) 658
BstMAI GTCTC 1 cut(s) 762
BstMBI GATC 1 cut(s) 655
BstMWI GCNNNNNNNGC 2 cut(s) 560, 635
BstNI CCWGG 1 cut(s) 815
BstNSI RCATGY 1 cut(s) 106
BstPI GGTNACC 1 cut(s) 575
BstSCI CCNGG 1 cut(s) 813
BstSLI GKGCMC 1 cut(s) 62
BstUI CGCG 1 cut(s) 126
BstV1I GCAGC 2 cut(s) 385, 515
BsuI GTATCC 1 cut(s) 520
BtgI CCRYGG 1 cut(s) 306
BtrI CACGTC 1 cut(s) 877
BtsCI GGATG 2 cut(s) 156, 442
BtsIMutI CAGTG 1 cut(s) 241
BveI ACCTGC 1 cut(s) 911
Cac8I GCNNGC 4 cut(s) 58, 104, 631, 855
CaiI CAGNNNCTG 2 cut(s) 806, 942
CciI TCATGA 1 cut(s) 435
Cfr13I GGNCC 1 cut(s) 817
Csp6I GTAC 3 cut(s) 612, 893, 940
CviAII CATG 4 cut(s) 103, 307, 383, 436
CviQI GTAC 3 cut(s) 612, 893, 940
DdeI CTNAG 4 cut(s) 174, 266, 568, 651
DpnI GATC 1 cut(s) 657
DpnII GATC 1 cut(s) 655
EciI GGCGGA 1 cut(s) 273
Eco130I CCWWGG 1 cut(s) 306
Eco47I GGWCC 1 cut(s) 817
Eco57I CTGAAG 1 cut(s) 431
Eco88I CYCGRG 1 cut(s) 759
Eco91I GGTNACC 1 cut(s) 575
EcoO65I GGTNACC 1 cut(s) 575
EcoRII CCWGG 1 cut(s) 813
EcoT14I CCWWGG 1 cut(s) 306
ErhI CCWWGG 1 cut(s) 306
FaeI CATG 4 cut(s) 106, 310, 386, 439
FaqI GGGAC 1 cut(s) 887
FatI CATG 4 cut(s) 102, 306, 382, 435
Fnu4HI GCNGC 2 cut(s) 399, 504
FokI GGATG 2 cut(s) 163, 429
Fsp4HI GCNGC 2 cut(s) 399, 504
FspBI CTAG 2 cut(s) 165, 858
GluI GCNGC 2 cut(s) 399, 504
GsaI CCCAGC 2 cut(s) 45, 705
Hin1II CATG 4 cut(s) 106, 310, 386, 439
HinfI GANTC 6 cut(s) 25, 161, 430, 482, 515, 605
Hpy166II GTNNAC 1 cut(s) 60
Hpy188I TCNGA 5 cut(s) 30, 411, 520, 652, 770
Hpy188III TCNNGA 2 cut(s) 436, 536
Hpy8I GTNNAC 1 cut(s) 60
HpyAV CCTTC 2 cut(s) 248, 406
HpyCH4III ACNGT 3 cut(s) 355, 616, 776
HpyCH4IV ACGT 2 cut(s) 588, 876
HpyCH4V TGCA 8 cut(s) 9, 60, 102, 106, 208, 282, 503, 800
HpyF10VI GCNNNNNNNGC 2 cut(s) 560, 635
HpyF3I CTNAG 4 cut(s) 174, 266, 568, 651
HpySE526I ACGT 2 cut(s) 588, 876
Hsp92II CATG 4 cut(s) 106, 310, 386, 439
Kzo9I GATC 1 cut(s) 655
LmnI GCTCC 1 cut(s) 415
Lsp1109I GCAGC 2 cut(s) 385, 515
LweI GCATC 3 cut(s) 427, 451, 490
MaeI CTAG 2 cut(s) 165, 858
MaeII ACGT 2 cut(s) 588, 876
MaeIII GTNAC 1 cut(s) 575
MalI GATC 1 cut(s) 657
MboI GATC 1 cut(s) 655
MboII GAAGA 1 cut(s) 845
MhlI GDGCHC 2 cut(s) 62, 855
MluCI AATT 9 cut(s) 128, 369, 639, 690, 788, 836, 842, 910, 916
MmeI TCCRAC 1 cut(s) 580
MseI TTAA 2 cut(s) 132, 146
MslI CAYNNNNRTG 2 cut(s) 713, 973
MspR9I CCNGG 1 cut(s) 815
MvaI CCWGG 1 cut(s) 815
MvnI CGCG 1 cut(s) 126
MwoI GCNNNNNNNGC 2 cut(s) 560, 635
NcoI CCATGG 1 cut(s) 306
NdeII GATC 1 cut(s) 655
NlaIII CATG 4 cut(s) 106, 310, 386, 439
NlaIV GGNNCC 3 cut(s) 122, 187, 882
NspI RCATGY 1 cut(s) 106
PaeI GCATGC 1 cut(s) 106
PagI TCATGA 1 cut(s) 435
PfeI GAWTC 6 cut(s) 25, 161, 430, 482, 515, 605
PfoI TCCNGGA 1 cut(s) 813
PkrI GCNGC 2 cut(s) 400, 505
Psp6I CCWGG 1 cut(s) 813
PspEI GGTNACC 1 cut(s) 575
PspFI CCCAGC 2 cut(s) 41, 701
PspGI CCWGG 1 cut(s) 813
PspN4I GGNNCC 3 cut(s) 122, 187, 882
PspPI GGNCC 1 cut(s) 817
PstNI CAGNNNCTG 2 cut(s) 806, 942
RsaI GTAC 3 cut(s) 613, 894, 941
RsaNI GTAC 3 cut(s) 612, 893, 940
RseI CAYNNNNRTG 2 cut(s) 713, 973
SaqAI TTAA 2 cut(s) 132, 146
SatI GCNGC 2 cut(s) 399, 504
Sau3AI GATC 1 cut(s) 655
Sau96I GGNCC 1 cut(s) 817
ScrFI CCNGG 1 cut(s) 815
SduI GDGCHC 2 cut(s) 62, 855
SfaNI GCATC 3 cut(s) 427, 451, 490
SinI GGWCC 1 cut(s) 817
SmiMI CAYNNNNRTG 2 cut(s) 713, 973
SphI GCATGC 1 cut(s) 106
Sse9I AATT 9 cut(s) 128, 369, 639, 690, 788, 836, 842, 910, 916
SsiI CCGC 2 cut(s) 124, 258
SspMI CTAG 2 cut(s) 165, 858
StyD4I CCNGG 1 cut(s) 813
StyI CCWWGG 1 cut(s) 306
TaaI ACNGT 3 cut(s) 355, 616, 776
TaiI ACGT 2 cut(s) 591, 879
TaqI TCGA 1 cut(s) 670
TasI AATT 9 cut(s) 128, 369, 639, 690, 788, 836, 842, 910, 916
TfiI GAWTC 6 cut(s) 25, 161, 430, 482, 515, 605
Tru1I TTAA 2 cut(s) 132, 146
Tru9I TTAA 2 cut(s) 132, 146
TscAI CASTG 1 cut(s) 241
TseI GCWGC 2 cut(s) 398, 503
TspDTI ATGAA 2 cut(s) 452, 846
TspRI CASTG 1 cut(s) 241
VneI GTGCAC 1 cut(s) 58
VpaK11BI GGWCC 1 cut(s) 817
XapI RAATTY 3 cut(s) 128, 369, 836
XceI RCATGY 1 cut(s) 106
XspI CTAG 2 cut(s) 165, 858
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.