Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0005995

Physical Location & Seq

Genomic Coordinates Forward (+)

2117684 .. 2120907

Gene Structure 3224 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026315

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGCAAACCTCTTTGGGGAACCGCGAATTTAAGACAACGAGTTTAAGGATGATGGTTGATTCTAGTGCGACCGAGAAACAGGGTTCCATTGTTGATGTCTTATTGCAGAAAGATGACGAGGGTGGATATATCAGTGGAGGCTGGAAAAGTGAAGGCGGAAAACTTAGCTGTGGCTATTCCAGTTTTAGGGGAAAAAGAGCCACCATGGAGGATTTTTTTGATATAAAAACTTCCAAGATTGATGGGCAAACAGTTTGCCTCTTTGGAATTTTTGATGGTCATGGTGGTTCTCGTGCTGCTGAATATCTGAAGGAGCATCTATTTGAGAATCTCATGAAGCATCCAAACTTTATAGCAGACACCAAGTTAGCTATTAGTGAATCATATCAACAAACTGATGCAGCTTTTTTGGATTCTGAAAGGGATACATACCGCGATGATGGTTCTACTGCTTCAACAGCAGTCTTAGTGGGCAACCATCTATACGTTGCCAATGTTGGAGATTCTCGTACAGTAATATCAAAGGCAGGCAAAGCAATTCCTCTATCTGAGGATCATAAACCAAATCGAACTGATGAGAGAAAGAGAATTGAAAATGCTGGGGGCATTGTAATGTGGGCAGGAACTTGGAGGGTAGGAGGTGTTTTGGCTATGTCTCGGGCTTTCGGAAACCGCATGTTGAAGCAATTTGTTGTTGCAGAACCTGAGATCCAGGACCAAGTGATAGATGAAGAATTTGAATTGCTGGTGCTCGCTAGTGATGGGCTGTGGGACGTGGTGCCAAATGAGGATGCTGTTTCACTTGCCCGAACAGAAGAAGAACCCGAGGCGGCAGCTCGGAAGTTAACAGGAACAGCATTTGCCCGTGGTAGTGCAGACAATATAACATCCATTGTGGTGAGGTTCCACCATGACAAAGCAGAGTCTGCTGGGGCTAACCACGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008150 GO:0009846 GO:0009856 GO:0022414 GO:0032501 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0051704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

316

Amino Acids

34.48

Weight (kDa)

5.15

Isoelectric Point (pI)

30.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	57 - 295	2.2e-64	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53140 AT5G53140
fragaria_vesca	FvH4_7g31190
malus_domestica	MD01G1216600.v1.1 MD07G1286600.v1.1
prunus_persica	Prupe.2G308600_v2.0.a1 Prupe.2G308600_v2.0.a1 Prupe.2G308600_v2.0.a1 Prupe.2G308600_v2.0.a1 Prupe.2G308600_v2.0.a1 Prupe.2G308600_v2.0.a1 Prupe.2G308600_v2.0.a1 Prupe.2G308600_v2.0.a1
pyrus_communis	pycom07g25970
rosa_chinensis	RchiOBHm_Chr1g0380251
rosa_laevigata	RLG00000026315
rosa_multiflora	Rmu_sc0001232.1_g000029
rosa_roxburghii	Rroxscaffold_4G00279540
rosa_rugosa	Rorug01G0419300 Rorug01G0419400 Rorug01G0419500
rosa_samantha	Rh1AG444100 Rh1BG399200 Rh1CG412600 Rh1DG429700
rosa_wichuraiana	Rw1G038570 Rw1G038640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	778
AccII	CGCG	2 cut(s)	24, 435
AciI	CCGC	5 cut(s)	22, 156, 433, 673, 830
AclWI	GGATC	2 cut(s)	561, 703
AcsI	RAATTY	3 cut(s)	26, 267, 734
AcuI	CTGAAG	1 cut(s)	329
AfaI	GTAC	1 cut(s)	511
AfiI	CCNNNNNNNGG	2 cut(s)	15, 186
AgsI	TTSAA	4 cut(s)	456, 593, 682, 740
AjiI	CACGTC	1 cut(s)	775
AjnI	CCWGG	1 cut(s)	711
AloI	GAACNNNNNNTCC	2 cut(s)	693, 725
AluBI	AGCT	4 cut(s)	168, 371, 404, 836
AluI	AGCT	4 cut(s)	168, 371, 404, 836
Alw21I	GWGCWC	1 cut(s)	753
Alw26I	GTCTC	1 cut(s)	660
AlwI	GGATC	2 cut(s)	561, 703
AlwNI	CAGNNNCTG	2 cut(s)	704, 926
Ama87I	CYCGRG	2 cut(s)	657, 824
ApeKI	GCWGC	3 cut(s)	296, 401, 833
ApoI	RAATTY	3 cut(s)	26, 267, 734
AspS9I	GGNCC	1 cut(s)	715
AsuHPI	GGTGA	1 cut(s)	910
AvaI	CYCGRG	2 cut(s)	657, 824
AvaII	GGWCC	1 cut(s)	715
BanI	GGYRCC	1 cut(s)	778
BauI	CACGAG	1 cut(s)	291
Bbv12I	GWGCWC	1 cut(s)	753
BbvI	GCAGC	3 cut(s)	283, 413, 845
BccI	CCATC	6 cut(s)	46, 236, 269, 434, 486, 755
BciT130I	CCWGG	1 cut(s)	713
BciVI	GTATCC	1 cut(s)	418
BcoDI	GTCTC	1 cut(s)	660
BfaI	CTAG	2 cut(s)	63, 756
BfuI	GTATCC	1 cut(s)	418
BisI	GCNGC	4 cut(s)	297, 402, 831, 834
BlsI	GCNGC	4 cut(s)	298, 403, 832, 835
Bme1390I	CCNGG	1 cut(s)	713
Bme18I	GGWCC	1 cut(s)	715
BmeT110I	CYCGRG	2 cut(s)	657, 824
BmgBI	CACGTC	1 cut(s)	775
BmgT120I	GGNCC	1 cut(s)	715
BmiI	GGNNCC	4 cut(s)	20, 85, 780, 905
BmrFI	CCNGG	1 cut(s)	713
BmsI	GCATC	4 cut(s)	325, 349, 388, 781
BsaJI	CCNNGG	3 cut(s)	204, 825, 865
Bsc4I	CCNNNNNNNGG	2 cut(s)	15, 186
Bse1I	ACTGG	1 cut(s)	180
BseBI	CCWGG	1 cut(s)	713
BseDI	CCNNGG	3 cut(s)	204, 825, 865
BseGI	GGATG	4 cut(s)	54, 340, 796, 887
BseLI	CCNNNNNNNGG	2 cut(s)	15, 186
BseMII	CTCAG	2 cut(s)	540, 696
BseNI	ACTGG	1 cut(s)	180
BseXI	GCAGC	3 cut(s)	283, 413, 845
BseYI	CCCAGC	2 cut(s)	599, 929
BsgI	GTGCAG	1 cut(s)	894
Bsh1236I	CGCG	2 cut(s)	24, 435
Bsh1285I	CGRYCG	1 cut(s)	72
BshNI	GGYRCC	1 cut(s)	778
BsiEI	CGRYCG	1 cut(s)	72
BsiHKAI	GWGCWC	1 cut(s)	753
BsiHKCI	CYCGRG	2 cut(s)	657, 824
BslFI	GGGAC	1 cut(s)	785
BslI	CCNNNNNNNGG	2 cut(s)	15, 186
BsmAI	GTCTC	1 cut(s)	660
BsmFI	GGGAC	1 cut(s)	785
BsoBI	CYCGRG	2 cut(s)	657, 824
Bsp1286I	GDGCHC	1 cut(s)	753
Bsp143I	GATC	2 cut(s)	553, 708
Bsp19I	CCATGG	1 cut(s)	204
BspACI	CCGC	5 cut(s)	22, 156, 433, 673, 830
BspCNI	CTCAG	2 cut(s)	541, 697
BspFNI	CGCG	2 cut(s)	24, 435
BspHI	TCATGA	1 cut(s)	333
BspLI	GGNNCC	4 cut(s)	20, 85, 780, 905
BspPI	GGATC	2 cut(s)	561, 703
BspT107I	GGYRCC	1 cut(s)	778
BsrI	ACTGG	1 cut(s)	180
BssECI	CCNNGG	3 cut(s)	204, 825, 865
BssMI	GATC	2 cut(s)	553, 708
BssSI	CACGAG	1 cut(s)	291
BssT1I	CCWWGG	1 cut(s)	204
Bst2BI	CACGAG	1 cut(s)	291
Bst2UI	CCWGG	1 cut(s)	713
Bst4CI	ACNGT	2 cut(s)	253, 514
BstAPI	GCANNNNNTGC	1 cut(s)	926
BstC8I	GCNNGC	2 cut(s)	529, 753
BstDEI	CTNAG	4 cut(s)	164, 466, 549, 705
BstDSI	CCRYGG	2 cut(s)	204, 865
BstF5I	GGATG	4 cut(s)	54, 340, 796, 887
BstFNI	CGCG	2 cut(s)	24, 435
BstKTI	GATC	2 cut(s)	556, 711
BstMAI	GTCTC	1 cut(s)	660
BstMBI	GATC	2 cut(s)	553, 708
BstMCI	CGRYCG	1 cut(s)	72
BstMWI	GCNNNNNNNGC	3 cut(s)	458, 533, 926
BstNI	CCWGG	1 cut(s)	713
BstNSI	RCATGY	1 cut(s)	679
BstSCI	CCNGG	1 cut(s)	711
BstUI	CGCG	2 cut(s)	24, 435
BstV1I	GCAGC	3 cut(s)	283, 413, 845
BstX2I	RGATCY	1 cut(s)	708
BstYI	RGATCY	1 cut(s)	708
BsuI	GTATCC	1 cut(s)	418
BtgI	CCRYGG	2 cut(s)	204, 865
BtgZI	GCGATG	1 cut(s)	450
BtrI	CACGTC	1 cut(s)	775
BtsCI	GGATG	4 cut(s)	54, 340, 796, 887
BtsIMutI	CAGTG	1 cut(s)	139
Cac8I	GCNNGC	2 cut(s)	529, 753
CaiI	CAGNNNCTG	2 cut(s)	704, 926
CciI	TCATGA	1 cut(s)	333
Cfr13I	GGNCC	1 cut(s)	715
Csp6I	GTAC	1 cut(s)	510
CviAII	CATG	5 cut(s)	205, 281, 334, 676, 911
CviQI	GTAC	1 cut(s)	510
DdeI	CTNAG	4 cut(s)	164, 466, 549, 705
DpnI	GATC	2 cut(s)	555, 710
DpnII	GATC	2 cut(s)	553, 708
EciI	GGCGGA	1 cut(s)	171
Eco130I	CCWWGG	1 cut(s)	204
Eco47I	GGWCC	1 cut(s)	715
Eco57I	CTGAAG	1 cut(s)	329
Eco88I	CYCGRG	2 cut(s)	657, 824
EcoRII	CCWGG	1 cut(s)	711
EcoT14I	CCWWGG	1 cut(s)	204
ErhI	CCWWGG	1 cut(s)	204
FaeI	CATG	5 cut(s)	208, 284, 337, 679, 914
FaqI	GGGAC	1 cut(s)	785
FatI	CATG	5 cut(s)	204, 280, 333, 675, 910
Fnu4HI	GCNGC	4 cut(s)	297, 402, 831, 834
FokI	GGATG	4 cut(s)	61, 327, 803, 874
Fsp4HI	GCNGC	4 cut(s)	297, 402, 831, 834
FspBI	CTAG	2 cut(s)	63, 756
GluI	GCNGC	4 cut(s)	297, 402, 831, 834
GsaI	CCCAGC	2 cut(s)	603, 933
Hin1II	CATG	5 cut(s)	208, 284, 337, 679, 914
HincII	GTYRAC	1 cut(s)	846
HindII	GTYRAC	1 cut(s)	846
HinfI	GANTC	6 cut(s)	59, 328, 380, 413, 503, 923
HpaI	GTTAAC	1 cut(s)	846
HphI	GGTGA	1 cut(s)	910
Hpy166II	GTNNAC	1 cut(s)	846
Hpy188I	TCNGA	5 cut(s)	309, 418, 550, 668, 840
Hpy188III	TCNNGA	1 cut(s)	334
Hpy8I	GTNNAC	1 cut(s)	846
HpyAV	CCTTC	2 cut(s)	146, 304
HpyCH4III	ACNGT	2 cut(s)	253, 514
HpyCH4IV	ACGT	2 cut(s)	486, 774
HpyCH4V	TGCA	5 cut(s)	4, 106, 401, 698, 875
HpyF10VI	GCNNNNNNNGC	3 cut(s)	458, 533, 926
HpyF3I	CTNAG	4 cut(s)	164, 466, 549, 705
HpySE526I	ACGT	2 cut(s)	486, 774
Hsp92II	CATG	5 cut(s)	208, 284, 337, 679, 914
KspAI	GTTAAC	1 cut(s)	846
Kzo9I	GATC	2 cut(s)	553, 708
LmnI	GCTCC	1 cut(s)	313
Lsp1109I	GCAGC	3 cut(s)	283, 413, 845
LweI	GCATC	4 cut(s)	325, 349, 388, 781
MaeI	CTAG	2 cut(s)	63, 756
MaeII	ACGT	2 cut(s)	486, 774
MalI	GATC	2 cut(s)	555, 710
MboI	GATC	2 cut(s)	553, 708
MboII	GAAGA	3 cut(s)	743, 827, 830
MflI	RGATCY	1 cut(s)	708
MhlI	GDGCHC	1 cut(s)	753
MluCI	AATT	7 cut(s)	26, 267, 537, 588, 686, 734, 740
MlyI	GAGTC	1 cut(s)	932
MmeI	TCCRAC	1 cut(s)	478
MseI	TTAA	3 cut(s)	30, 44, 845
MslI	CAYNNNNRTG	2 cut(s)	611, 896
MspR9I	CCNGG	1 cut(s)	713
MvaI	CCWGG	1 cut(s)	713
MvnI	CGCG	2 cut(s)	24, 435
MwoI	GCNNNNNNNGC	3 cut(s)	458, 533, 926
NcoI	CCATGG	1 cut(s)	204
NdeII	GATC	2 cut(s)	553, 708
NlaIII	CATG	5 cut(s)	208, 284, 337, 679, 914
NlaIV	GGNNCC	4 cut(s)	20, 85, 780, 905
NspI	RCATGY	1 cut(s)	679
PagI	TCATGA	1 cut(s)	333
PfeI	GAWTC	5 cut(s)	59, 328, 380, 413, 503
PfoI	TCCNGGA	1 cut(s)	711
PkrI	GCNGC	4 cut(s)	298, 403, 832, 835
PleI	GAGTC	1 cut(s)	931
PpsI	GAGTC	1 cut(s)	931
Psp6I	CCWGG	1 cut(s)	711
PspFI	CCCAGC	2 cut(s)	599, 929
PspGI	CCWGG	1 cut(s)	711
PspN4I	GGNNCC	4 cut(s)	20, 85, 780, 905
PspPI	GGNCC	1 cut(s)	715
PstNI	CAGNNNCTG	2 cut(s)	704, 926
PsuI	RGATCY	1 cut(s)	708
RsaI	GTAC	1 cut(s)	511
RsaNI	GTAC	1 cut(s)	510
RseI	CAYNNNNRTG	2 cut(s)	611, 896
SaqAI	TTAA	3 cut(s)	30, 44, 845
SatI	GCNGC	4 cut(s)	297, 402, 831, 834
Sau3AI	GATC	2 cut(s)	553, 708
Sau96I	GGNCC	1 cut(s)	715
SchI	GAGTC	1 cut(s)	932
ScrFI	CCNGG	1 cut(s)	713
SduI	GDGCHC	1 cut(s)	753
SfaNI	GCATC	4 cut(s)	325, 349, 388, 781
SinI	GGWCC	1 cut(s)	715
SmiMI	CAYNNNNRTG	2 cut(s)	611, 896
Sse9I	AATT	7 cut(s)	26, 267, 537, 588, 686, 734, 740
SsiI	CCGC	5 cut(s)	22, 156, 433, 673, 830
SspMI	CTAG	2 cut(s)	63, 756
StyD4I	CCNGG	1 cut(s)	711
StyI	CCWWGG	1 cut(s)	204
TaaI	ACNGT	2 cut(s)	253, 514
TaiI	ACGT	2 cut(s)	489, 777
TaqI	TCGA	1 cut(s)	568
TaqII	GACCGA	1 cut(s)	86
TasI	AATT	7 cut(s)	26, 267, 537, 588, 686, 734, 740
TauI	GCSGC	1 cut(s)	833
TfiI	GAWTC	5 cut(s)	59, 328, 380, 413, 503
Tru1I	TTAA	3 cut(s)	30, 44, 845
Tru9I	TTAA	3 cut(s)	30, 44, 845
TscAI	CASTG	1 cut(s)	139
TseI	GCWGC	3 cut(s)	296, 401, 833
TspDTI	ATGAA	2 cut(s)	350, 744
TspRI	CASTG	1 cut(s)	139
VpaK11BI	GGWCC	1 cut(s)	715
XapI	RAATTY	3 cut(s)	26, 267, 734
XceI	RCATGY	1 cut(s)	679
XspI	CTAG	2 cut(s)	63, 756

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.