Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0005995

Physical Location & Seq

Genomic Coordinates Reverse (-)

29266968 .. 29271116

Gene Structure 4149 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G308600.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGATATGCAAAATTTGCATAAGGAGTGTGATTGCTCAAGCTGGCCATATAGTAAAGTTCACAAAAGCAAGGGTGCATTTGAACAATTTTGAGAGAATTCGCAAGTGTGCCAATCCGTGGAACCGAGCATTTAGGACGAGTTTAAGGATGATGGTTGATGCAGGTGAGATGGAAAAACGGGGCTCCATTCTTGATGTGCTGCCAGACAAAAATGAAGATGGTGAATATACCAGCGGGGGTTTGAAAAGTGAAGGCGGAAAACTGAGTTGCGGCTATTCAAGTTTCAGGGGAAAAAGAGCAACCATGGAGGATTTTTATGACATTAAGATGTCCAAAATCGATGGGCAAACAGTCTGCCTGTTTGGAATATTCGATGGTCATGGTGGTTCTCGTGCTGCTGAATATTTGAAGGAGCATCTATTTGAGAATCTCGTGAAGCATCCACTATTTATTACAGACACGAAGTTAGCTATTAGTGAATCGTATCAACAGACGGATGCAGATTTCTTGGCTTCTGAAAGAGATACATACCGTGATGATGGTTCTACTGCTTCAACAGCAGTCTTGGTTGGTAACCATCTATATGTTGCCAATGTTGGAGATTCACGTACAATAATATCAAAGGCAGGAAGAGCAATTCCTTTATCTGAGGATCACAAACCAAATCGAAGTGATGAGAGGAAGAGAATTGAAAGTGCCGGGGGTGTTGTAATGTGGGCAGGCACTTGGAGGGTAGGAGGTGTGCTGGCTATGTCTCGGGCTTTTGGGAACCGCATGTTGAAACAATTTGTTGTCGCAGAACCTGAGATCCAGGACCAAGAGGTGGATGAAGAATTTGAATTTATCGTGCTTGCTAGTGATGGGTTATGGGACGTGGTACCAAATGAGGTTGCTGTTGAAGTGGCCCAAACAGAAGAACAACCTGAGGCAGCAGCTCGAAAGTTAACGGCGGTTGCATTTTGCCGCGGTAGTGCAGACAATATAACATGCATTGTGGTGAAGTTCCACCACGACAAAGCAGAGCCTGCCAGTGAACACCGTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008150 GO:0009846 GO:0009856 GO:0022414 GO:0032501 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0051704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP2C

Protein Analysis

349

Amino Acids

38.64

Weight (kDa)

5.98

Isoelectric Point (pI)

35.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53140 AT5G53140
fragaria_vesca	FvH4_7g31190
malus_domestica	MD01G1216600.v1.1 MD07G1286600.v1.1
prunus_persica	Prupe.2G308600_v2.0.a1 Prupe.2G308600_v2.0.a1 Prupe.2G308600_v2.0.a1 Prupe.2G308600_v2.0.a1 Prupe.2G308600_v2.0.a1 Prupe.2G308600_v2.0.a1 Prupe.2G308600_v2.0.a1 Prupe.2G308600_v2.0.a1
pyrus_communis	pycom07g25970
rosa_chinensis	RchiOBHm_Chr1g0380251
rosa_laevigata	RLG00000026315
rosa_multiflora	Rmu_sc0001232.1_g000029
rosa_roxburghii	Rroxscaffold_4G00279540
rosa_rugosa	Rorug01G0419300 Rorug01G0419400 Rorug01G0419500
rosa_samantha	Rh1AG444100 Rh1BG399200 Rh1CG412600 Rh1DG429700
rosa_wichuraiana	Rw1G038570 Rw1G038640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	152
Acc36I	ACCTGC	1 cut(s)	152
Acc65I	GGTACC	1 cut(s)	877
AccB1I	GGYRCC	1 cut(s)	877
AccB7I	CCANNNNNTGG	2 cut(s)	117, 823
AccII	CGCG	1 cut(s)	966
AciI	CCGC	7 cut(s)	234, 255, 270, 772, 950, 964, 966
AclWI	GGATC	2 cut(s)	660, 802
AcoI	YGGCCR	1 cut(s)	43
AcsI	RAATTY	4 cut(s)	12, 96, 833, 839
AfaI	GTAC	2 cut(s)	610, 879
AfiI	CCNNNNNNNGG	2 cut(s)	117, 823
AgsI	TTSAA	9 cut(s)	82, 244, 279, 409, 555, 692, 781, 839, 899
AjiI	CACGTC	1 cut(s)	874
AjnI	CCWGG	1 cut(s)	810
AloI	GAACNNNNNNTCC	2 cut(s)	792, 824
AluBI	AGCT	3 cut(s)	41, 470, 935
AluI	AGCT	3 cut(s)	41, 470, 935
Alw26I	GTCTC	1 cut(s)	759
AlwI	GGATC	2 cut(s)	660, 802
AlwNI	CAGNNNCTG	2 cut(s)	803, 1025
Ama87I	CYCGRG	1 cut(s)	756
AoxI	GGCC	2 cut(s)	43, 903
ApeKI	GCWGC	4 cut(s)	199, 395, 929, 932
ApoI	RAATTY	4 cut(s)	12, 96, 833, 839
Asp718I	GGTACC	1 cut(s)	877
AspS9I	GGNCC	2 cut(s)	814, 904
AsuC2I	CCSGG	1 cut(s)	700
AsuHPI	GGTGA	3 cut(s)	176, 233, 1009
AvaI	CYCGRG	1 cut(s)	756
AvaII	GGWCC	1 cut(s)	814
AxyI	CCTNAGG	1 cut(s)	924
BalI	TGGCCA	1 cut(s)	45
BanI	GGYRCC	1 cut(s)	877
BanII	GRGCYC	1 cut(s)	185
BauI	CACGAG	2 cut(s)	390, 431
BbvI	GCAGC	4 cut(s)	186, 382, 941, 944
BccI	CCATC	8 cut(s)	145, 163, 212, 335, 368, 533, 585, 854
BceAI	ACGGC	1 cut(s)	963
BciT130I	CCWGG	1 cut(s)	812
BcnI	CCSGG	1 cut(s)	700
BcoDI	GTCTC	1 cut(s)	759
BfaI	CTAG	1 cut(s)	855
BfuAI	ACCTGC	1 cut(s)	152
BisI	GCNGC	6 cut(s)	200, 271, 396, 930, 933, 964
BlsI	GCNGC	6 cut(s)	201, 272, 397, 931, 934, 965
Bme1390I	CCNGG	2 cut(s)	700, 812
Bme18I	GGWCC	1 cut(s)	814
BmeT110I	CYCGRG	1 cut(s)	756
BmgBI	CACGTC	1 cut(s)	874
BmgT120I	GGNCC	2 cut(s)	814, 904
BmiI	GGNNCC	4 cut(s)	122, 184, 770, 879
BmrFI	CCNGG	2 cut(s)	700, 812
BmsI	GCATC	4 cut(s)	148, 424, 448, 487
BpuEI	CTTGAG	1 cut(s)	21
BpuMI	CCSGG	1 cut(s)	700
Bsa29I	ATCGAT	1 cut(s)	339
BsaAI	YACGTR	1 cut(s)	608
BsaJI	CCNNGG	4 cut(s)	116, 303, 699, 964
Bsc4I	CCNNNNNNNGG	2 cut(s)	117, 823
Bse1I	ACTGG	1 cut(s)	1029
Bse21I	CCTNAGG	1 cut(s)	924
BseBI	CCWGG	1 cut(s)	812
BseCI	ATCGAT	1 cut(s)	339
BseDI	CCNNGG	4 cut(s)	116, 303, 699, 964
BseGI	GGATG	4 cut(s)	153, 439, 502, 832
BseLI	CCNNNNNNNGG	2 cut(s)	117, 823
BseMII	CTCAG	4 cut(s)	254, 639, 795, 915
BseNI	ACTGG	1 cut(s)	1029
BseXI	GCAGC	4 cut(s)	186, 382, 941, 944
BsgI	GTGCAG	1 cut(s)	993
Bsh1236I	CGCG	1 cut(s)	966
BshFI	GGCC	2 cut(s)	45, 905
BshNI	GGYRCC	1 cut(s)	877
BshVI	ATCGAT	1 cut(s)	339
BsiHKCI	CYCGRG	1 cut(s)	756
BsiSI	CCGG	1 cut(s)	699
BslFI	GGGAC	1 cut(s)	884
BslI	CCNNNNNNNGG	2 cut(s)	117, 823
BsmAI	GTCTC	1 cut(s)	759
BsmFI	GGGAC	1 cut(s)	884
BsnI	GGCC	2 cut(s)	45, 905
BsoBI	CYCGRG	1 cut(s)	756
Bsp1286I	GDGCHC	1 cut(s)	185
Bsp143I	GATC	2 cut(s)	652, 807
Bsp19I	CCATGG	1 cut(s)	303
BspACI	CCGC	7 cut(s)	234, 255, 270, 772, 950, 964, 966
BspANI	GGCC	2 cut(s)	45, 905
BspCNI	CTCAG	4 cut(s)	255, 640, 796, 916
BspDI	ATCGAT	1 cut(s)	339
BspFNI	CGCG	1 cut(s)	966
BspLI	GGNNCC	4 cut(s)	122, 184, 770, 879
BspMI	ACCTGC	1 cut(s)	152
BspPI	GGATC	2 cut(s)	660, 802
BspQI	GCTCTTC	1 cut(s)	625
BspT107I	GGYRCC	1 cut(s)	877
BsrI	ACTGG	1 cut(s)	1029
BssECI	CCNNGG	4 cut(s)	116, 303, 699, 964
BssMI	GATC	2 cut(s)	652, 807
BssSI	CACGAG	2 cut(s)	390, 431
BssT1I	CCWWGG	1 cut(s)	303
Bst2BI	CACGAG	2 cut(s)	390, 431
Bst2UI	CCWGG	1 cut(s)	812
Bst4CI	ACNGT	3 cut(s)	352, 533, 1040
Bst6I	CTCTTC	2 cut(s)	625, 677
BstAPI	GCANNNNNTGC	2 cut(s)	15, 1025
BstBAI	YACGTR	1 cut(s)	608
BstC8I	GCNNGC	5 cut(s)	43, 721, 747, 852, 1026
BstDEI	CTNAG	4 cut(s)	263, 648, 804, 924
BstDSI	CCRYGG	3 cut(s)	116, 303, 964
BstEII	GGTNACC	1 cut(s)	572
BstF5I	GGATG	4 cut(s)	153, 439, 502, 832
BstFNI	CGCG	1 cut(s)	966
BstKTI	GATC	2 cut(s)	655, 810
BstMAI	GTCTC	1 cut(s)	759
BstMBI	GATC	2 cut(s)	652, 807
BstMWI	GCNNNNNNNGC	4 cut(s)	15, 557, 632, 1025
BstNI	CCWGG	1 cut(s)	812
BstNSI	RCATGY	2 cut(s)	778, 990
BstPI	GGTNACC	1 cut(s)	572
BstSCI	CCNGG	2 cut(s)	698, 810
BstUI	CGCG	1 cut(s)	966
BstV1I	GCAGC	4 cut(s)	186, 382, 941, 944
BstX2I	RGATCY	1 cut(s)	807
BstYI	RGATCY	1 cut(s)	807
Bsu15I	ATCGAT	1 cut(s)	339
Bsu36I	CCTNAGG	1 cut(s)	924
BsuRI	GGCC	2 cut(s)	45, 905
BsuTUI	ATCGAT	1 cut(s)	339
BtgI	CCRYGG	3 cut(s)	116, 303, 964
BtrI	CACGTC	1 cut(s)	874
BtsCI	GGATG	4 cut(s)	153, 439, 502, 832
BtsIMutI	CAGTG	1 cut(s)	1036
BveI	ACCTGC	1 cut(s)	152
Cac8I	GCNNGC	5 cut(s)	43, 721, 747, 852, 1026
CaiI	CAGNNNCTG	2 cut(s)	803, 1025
Cfr13I	GGNCC	2 cut(s)	814, 904
Cfr42I	CCGCGG	1 cut(s)	967
ClaI	ATCGAT	1 cut(s)	339
Csp6I	GTAC	2 cut(s)	609, 878
CviAII	CATG	4 cut(s)	304, 380, 775, 987
CviQI	GTAC	2 cut(s)	609, 878
DdeI	CTNAG	4 cut(s)	263, 648, 804, 924
DpnI	GATC	2 cut(s)	654, 809
DpnII	GATC	2 cut(s)	652, 807
EaeI	YGGCCR	1 cut(s)	43
Eam1104I	CTCTTC	2 cut(s)	625, 677
EarI	CTCTTC	2 cut(s)	625, 677
EciI	GGCGGA	1 cut(s)	270
Eco130I	CCWWGG	1 cut(s)	303
Eco24I	GRGCYC	1 cut(s)	185
Eco47I	GGWCC	1 cut(s)	814
Eco81I	CCTNAGG	1 cut(s)	924
Eco88I	CYCGRG	1 cut(s)	756
Eco91I	GGTNACC	1 cut(s)	572
EcoO65I	GGTNACC	1 cut(s)	572
EcoRI	GAATTC	1 cut(s)	96
EcoRII	CCWGG	1 cut(s)	810
EcoT14I	CCWWGG	1 cut(s)	303
EcoT22I	ATGCAT	1 cut(s)	992
EcoT38I	GRGCYC	1 cut(s)	185
ErhI	CCWWGG	1 cut(s)	303
FaeI	CATG	4 cut(s)	307, 383, 778, 990
FaqI	GGGAC	1 cut(s)	884
FatI	CATG	4 cut(s)	303, 379, 774, 986
FauI	CCCGC	1 cut(s)	227
Fnu4HI	GCNGC	6 cut(s)	200, 271, 396, 930, 933, 964
FokI	GGATG	4 cut(s)	160, 426, 509, 839
FriOI	GRGCYC	1 cut(s)	185
Fsp4HI	GCNGC	6 cut(s)	200, 271, 396, 930, 933, 964
FspBI	CTAG	1 cut(s)	855
GluI	GCNGC	6 cut(s)	200, 271, 396, 930, 933, 964
HaeIII	GGCC	2 cut(s)	45, 905
HapII	CCGG	1 cut(s)	699
Hin1II	CATG	4 cut(s)	307, 383, 778, 990
HincII	GTYRAC	1 cut(s)	945
HindII	GTYRAC	1 cut(s)	945
HinfI	GANTC	3 cut(s)	427, 479, 602
HpaI	GTTAAC	1 cut(s)	945
HpaII	CCGG	1 cut(s)	699
HphI	GGTGA	3 cut(s)	176, 233, 1009
Hpy166II	GTNNAC	3 cut(s)	60, 945, 1034
Hpy188I	TCNGA	2 cut(s)	517, 649
Hpy188III	TCNNGA	2 cut(s)	191, 433
Hpy8I	GTNNAC	3 cut(s)	60, 945, 1034
HpyAV	CCTTC	2 cut(s)	245, 403
HpyCH4III	ACNGT	3 cut(s)	352, 533, 1040
HpyCH4IV	ACGT	2 cut(s)	607, 873
HpyCH4V	TGCA	8 cut(s)	9, 18, 76, 161, 500, 956, 974, 990
HpyF10VI	GCNNNNNNNGC	4 cut(s)	15, 557, 632, 1025
HpyF3I	CTNAG	4 cut(s)	263, 648, 804, 924
HpySE526I	ACGT	2 cut(s)	607, 873
Hsp92II	CATG	4 cut(s)	307, 383, 778, 990
KpnI	GGTACC	1 cut(s)	881
KspAI	GTTAAC	1 cut(s)	945
KspI	CCGCGG	1 cut(s)	967
Kzo9I	GATC	2 cut(s)	652, 807
LguI	GCTCTTC	1 cut(s)	625
LmnI	GCTCC	2 cut(s)	188, 412
Lsp1109I	GCAGC	4 cut(s)	186, 382, 941, 944
LweI	GCATC	4 cut(s)	148, 424, 448, 487
MaeI	CTAG	1 cut(s)	855
MaeII	ACGT	2 cut(s)	607, 873
MaeIII	GTNAC	1 cut(s)	572
MalI	GATC	2 cut(s)	654, 809
MboI	GATC	2 cut(s)	652, 807
MboII	GAAGA	5 cut(s)	227, 642, 694, 842, 926
MflI	RGATCY	1 cut(s)	807
MhlI	GDGCHC	1 cut(s)	185
MlsI	TGGCCA	1 cut(s)	45
MluCI	AATT	8 cut(s)	12, 85, 96, 636, 687, 785, 833, 839
MluNI	TGGCCA	1 cut(s)	45
MmeI	TCCRAC	1 cut(s)	577
MnlI	CCTC	8 cut(s)	301, 643, 672, 723, 731, 814, 880, 919
Mox20I	TGGCCA	1 cut(s)	45
Mph1103I	ATGCAT	1 cut(s)	992
MscI	TGGCCA	1 cut(s)	45
MseI	TTAA	3 cut(s)	143, 324, 944
MslI	CAYNNNNRTG	3 cut(s)	326, 582, 995
Msp20I	TGGCCA	1 cut(s)	45
MspA1I	CMGCKG	2 cut(s)	234, 966
MspI	CCGG	1 cut(s)	699
MspR9I	CCNGG	2 cut(s)	700, 812
MvaI	CCWGG	1 cut(s)	812
MvnI	CGCG	1 cut(s)	966
MwoI	GCNNNNNNNGC	4 cut(s)	15, 557, 632, 1025
NciI	CCSGG	1 cut(s)	700
NcoI	CCATGG	1 cut(s)	303
NdeII	GATC	2 cut(s)	652, 807
NlaIII	CATG	4 cut(s)	307, 383, 778, 990
NlaIV	GGNNCC	4 cut(s)	122, 184, 770, 879
NsiI	ATGCAT	1 cut(s)	992
NspI	RCATGY	2 cut(s)	778, 990
PaqCI	CACCTGC	1 cut(s)	152
PciSI	GCTCTTC	1 cut(s)	625
PfeI	GAWTC	3 cut(s)	427, 479, 602
PflMI	CCANNNNNTGG	2 cut(s)	117, 823
PfoI	TCCNGGA	1 cut(s)	810
PkrI	GCNGC	6 cut(s)	201, 272, 397, 931, 934, 965
Ppu21I	YACGTR	1 cut(s)	608
Psp6I	CCWGG	1 cut(s)	810
PspEI	GGTNACC	1 cut(s)	572
PspGI	CCWGG	1 cut(s)	810
PspN4I	GGNNCC	4 cut(s)	122, 184, 770, 879
PspPI	GGNCC	2 cut(s)	814, 904
PstNI	CAGNNNCTG	2 cut(s)	803, 1025
PsuI	RGATCY	1 cut(s)	807
RsaI	GTAC	2 cut(s)	610, 879
RsaNI	GTAC	2 cut(s)	609, 878
RseI	CAYNNNNRTG	3 cut(s)	326, 582, 995
SacII	CCGCGG	1 cut(s)	967
SapI	GCTCTTC	1 cut(s)	625
SaqAI	TTAA	3 cut(s)	143, 324, 944
SatI	GCNGC	6 cut(s)	200, 271, 396, 930, 933, 964
Sau3AI	GATC	2 cut(s)	652, 807
Sau96I	GGNCC	2 cut(s)	814, 904
ScrFI	CCNGG	2 cut(s)	700, 812
SduI	GDGCHC	1 cut(s)	185
SfaNI	GCATC	4 cut(s)	148, 424, 448, 487
Sfr303I	CCGCGG	1 cut(s)	967
SgrBI	CCGCGG	1 cut(s)	967
SinI	GGWCC	1 cut(s)	814
SmiMI	CAYNNNNRTG	3 cut(s)	326, 582, 995
SmlI	CTYRAG	1 cut(s)	36
SmoI	CTYRAG	1 cut(s)	36
Sse9I	AATT	8 cut(s)	12, 85, 96, 636, 687, 785, 833, 839
SsiI	CCGC	7 cut(s)	234, 255, 270, 772, 950, 964, 966
SspI	AATATT	2 cut(s)	369, 404
SspMI	CTAG	1 cut(s)	855
StyD4I	CCNGG	2 cut(s)	698, 810
StyI	CCWWGG	1 cut(s)	303
TaaI	ACNGT	3 cut(s)	352, 533, 1040
TaiI	ACGT	2 cut(s)	610, 876
TaqI	TCGA	4 cut(s)	339, 372, 667, 937
TasI	AATT	8 cut(s)	12, 85, 96, 636, 687, 785, 833, 839
TauI	GCSGC	2 cut(s)	273, 966
TfiI	GAWTC	3 cut(s)	427, 479, 602
Tru1I	TTAA	3 cut(s)	143, 324, 944
Tru9I	TTAA	3 cut(s)	143, 324, 944
TscAI	CASTG	1 cut(s)	1036
TseI	GCWGC	4 cut(s)	199, 395, 929, 932
TspDTI	ATGAA	2 cut(s)	228, 843
TspGWI	ACGGA	2 cut(s)	105, 509
TspRI	CASTG	1 cut(s)	1036
Van91I	CCANNNNNTGG	2 cut(s)	117, 823
VpaK11BI	GGWCC	1 cut(s)	814
XapI	RAATTY	4 cut(s)	12, 96, 833, 839
XceI	RCATGY	2 cut(s)	778, 990
XspI	CTAG	1 cut(s)	855
Zsp2I	ATGCAT	1 cut(s)	992

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.