Rh1AG444100

phosphatase 2c

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0005995
Physical Location & Seq
Reverse (-)
66470140 .. 66474677
4538 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG444100.1

Sequence Viewer

Length: 1050 bp
ATGATATGCAAGAGTGGGATAAGGAGTCTGATTGTTCAAGCTGGGAATATAGTAGCGTGCACAAAAACTGGGGCGTATTTGAACAACATTGGGAGAGTTTACATGCAAACATCTTTGGGGAACCGCGAATTTAAGACAACGAGTTTAAGGATGATGGTTGATTCTAGTGCCACCGAAAAACAGGGTTCCATTGTTGATGTCTTATCGCAGAAAGATGAAGAGGGTGGATATATCAGTGGAGGCTGGAAAAGTGAAGGTGGAAAACTTAGCTGTGGCTATTGCAGTTTCAGGGGAAAAAGAGCCACCATGGAGGATTTTTATGATATAAAAACTTCCAAGATTGATGGGCAAACAGTTTGCCTTTTTGGAATTTTTGATGGTCACGGTGGTTCTCGTGCTGCTGAATATCTGAAGGAGCATCTATTTGAGAATCTCATGAAGCATCCAAACTTTATCACAGACACCAAATTGGCTATTAGTGAATCATATCAACAAACTGATGCAGCTTTTTTGGATTCTGAAAGGGATACATATCGTGATGATGGTTCTACTGCTTCAACAGCAGTCTTAGTGGGTAACCATCTATACGTTGCCAATGTTGGAGATTCTCGTACAGTAATATCAAAAGCAGGCAAAGCAATTCCTCTATCTGAGGATCATAAACCAAATCGAACTGATGAGAGAAAGAGAATTGAAAATGCTGGGGGCATTGTAATGTGGGCAGGAACTTGGAGGGTAGGAGGTGTTTTGGCTATGTCTCGGGCTTTCGGAAACCGTATGTTGAAGCAATTTGTTGTTGCAGAACCTGAAATCCAGGACCAAGTGATAGATGAAGAATTTGAATTGCTGGTGCTCGCTAGTGATGGGCTGTGGGACGTGGTGCCAAATGAGGATGCTGTTTCACTTGCCCGAACAGAAGAAGAACCCGAGGCGGCAGCTCGGAAGTTAACGGGAACTGCATTTGCCCGTGGTAGTGCAGACAATATAACATCCATTGTGGTGAGGTTCCACCATGACAAAGCAGAGTCTGCTGGGGCTAACCATGATTAG

Protein Analysis

349

Amino Acids

38.14

Weight (kDa)

5.49

Isoelectric Point (pI)

35.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 91 - 329 3e-64 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 880
AccII CGCG 1 cut(s) 126
AciI CCGC 2 cut(s) 124, 932
AclWI GGATC 1 cut(s) 663
AcsI RAATTY 3 cut(s) 128, 369, 836
AcuI CTGAAG 1 cut(s) 431
AfaI GTAC 1 cut(s) 613
AgsI TTSAA 6 cut(s) 38, 82, 558, 695, 784, 842
AjiI CACGTC 1 cut(s) 877
AjnI CCWGG 1 cut(s) 813
AloI GAACNNNNNNTCC 2 cut(s) 795, 827
AluBI AGCT 4 cut(s) 41, 270, 506, 938
AluI AGCT 4 cut(s) 41, 270, 506, 938
Alw21I GWGCWC 2 cut(s) 62, 855
Alw26I GTCTC 1 cut(s) 762
Alw44I GTGCAC 1 cut(s) 58
AlwI GGATC 1 cut(s) 663
AlwNI CAGNNNCTG 2 cut(s) 806, 1028
Ama87I CYCGRG 2 cut(s) 759, 926
ApaLI GTGCAC 1 cut(s) 58
ApeKI GCWGC 3 cut(s) 398, 503, 935
ApoI RAATTY 3 cut(s) 128, 369, 836
AspS9I GGNCC 1 cut(s) 817
AsuHPI GGTGA 1 cut(s) 1012
AvaI CYCGRG 2 cut(s) 759, 926
AvaII GGWCC 1 cut(s) 817
BaeGI GKGCMC 1 cut(s) 62
BanI GGYRCC 1 cut(s) 880
BauI CACGAG 1 cut(s) 393
Bbv12I GWGCWC 2 cut(s) 62, 855
BbvI GCAGC 3 cut(s) 385, 515, 947
BccI CCATC 6 cut(s) 148, 338, 371, 536, 588, 857
BciT130I CCWGG 1 cut(s) 815
BciVI GTATCC 1 cut(s) 520
BcoDI GTCTC 1 cut(s) 762
BfaI CTAG 2 cut(s) 165, 858
BfuI GTATCC 1 cut(s) 520
BisI GCNGC 4 cut(s) 399, 504, 933, 936
BlsI GCNGC 4 cut(s) 400, 505, 934, 937
Bme1390I CCNGG 1 cut(s) 815
Bme18I GGWCC 1 cut(s) 817
BmeT110I CYCGRG 2 cut(s) 759, 926
BmgBI CACGTC 1 cut(s) 877
BmgT120I GGNCC 1 cut(s) 817
BmiI GGNNCC 4 cut(s) 122, 187, 882, 1007
BmrFI CCNGG 1 cut(s) 815
BmrI ACTGGG 1 cut(s) 78
BmsI GCATC 4 cut(s) 427, 451, 490, 883
BmuI ACTGGG 1 cut(s) 78
BsaBI GATNNNNATC 1 cut(s) 531
BsaJI CCNNGG 3 cut(s) 306, 927, 967
Bse1I ACTGG 1 cut(s) 73
Bse8I GATNNNNATC 1 cut(s) 531
BseBI CCWGG 1 cut(s) 815
BseDI CCNNGG 3 cut(s) 306, 927, 967
BseGI GGATG 4 cut(s) 156, 442, 898, 989
BseJI GATNNNNATC 1 cut(s) 531
BseMII CTCAG 1 cut(s) 642
BseNI ACTGG 1 cut(s) 73
BseSI GKGCMC 1 cut(s) 62
BseXI GCAGC 3 cut(s) 385, 515, 947
BseYI CCCAGC 3 cut(s) 41, 701, 1031
BsgI GTGCAG 1 cut(s) 996
Bsh1236I CGCG 1 cut(s) 126
BshNI GGYRCC 1 cut(s) 880
BsiHKAI GWGCWC 2 cut(s) 62, 855
BsiHKCI CYCGRG 2 cut(s) 759, 926
BslFI GGGAC 1 cut(s) 887
BsmAI GTCTC 1 cut(s) 762
BsmFI GGGAC 1 cut(s) 887
BsoBI CYCGRG 2 cut(s) 759, 926
Bsp1286I GDGCHC 2 cut(s) 62, 855
Bsp143I GATC 1 cut(s) 655
Bsp19I CCATGG 1 cut(s) 306
BspACI CCGC 2 cut(s) 124, 932
BspCNI CTCAG 1 cut(s) 643
BspFNI CGCG 1 cut(s) 126
BspHI TCATGA 1 cut(s) 435
BspLI GGNNCC 4 cut(s) 122, 187, 882, 1007
BspPI GGATC 1 cut(s) 663
BspT107I GGYRCC 1 cut(s) 880
BsrI ACTGG 1 cut(s) 73
BssECI CCNNGG 3 cut(s) 306, 927, 967
BssMI GATC 1 cut(s) 655
BssSI CACGAG 1 cut(s) 393
BssT1I CCWWGG 1 cut(s) 306
Bst2BI CACGAG 1 cut(s) 393
Bst2UI CCWGG 1 cut(s) 815
Bst4CI ACNGT 4 cut(s) 355, 386, 616, 776
Bst6I CTCTTC 1 cut(s) 213
BstAPI GCANNNNNTGC 1 cut(s) 1028
BstC8I GCNNGC 3 cut(s) 58, 631, 855
BstDEI CTNAG 3 cut(s) 266, 568, 651
BstDSI CCRYGG 2 cut(s) 306, 967
BstEII GGTNACC 1 cut(s) 575
BstF5I GGATG 4 cut(s) 156, 442, 898, 989
BstFNI CGCG 1 cut(s) 126
BstKTI GATC 1 cut(s) 658
BstMAI GTCTC 1 cut(s) 762
BstMBI GATC 1 cut(s) 655
BstMWI GCNNNNNNNGC 3 cut(s) 560, 635, 1028
BstNI CCWGG 1 cut(s) 815
BstNSI RCATGY 1 cut(s) 106
BstPI GGTNACC 1 cut(s) 575
BstSCI CCNGG 1 cut(s) 813
BstSLI GKGCMC 1 cut(s) 62
BstUI CGCG 1 cut(s) 126
BstV1I GCAGC 3 cut(s) 385, 515, 947
BsuI GTATCC 1 cut(s) 520
BtgI CCRYGG 2 cut(s) 306, 967
BtrI CACGTC 1 cut(s) 877
BtsCI GGATG 4 cut(s) 156, 442, 898, 989
BtsIMutI CAGTG 1 cut(s) 241
Cac8I GCNNGC 3 cut(s) 58, 631, 855
CaiI CAGNNNCTG 2 cut(s) 806, 1028
CciI TCATGA 1 cut(s) 435
Cfr13I GGNCC 1 cut(s) 817
Csp6I GTAC 1 cut(s) 612
CviAII CATG 5 cut(s) 103, 307, 436, 1013, 1043
CviQI GTAC 1 cut(s) 612
DdeI CTNAG 3 cut(s) 266, 568, 651
DpnI GATC 1 cut(s) 657
DpnII GATC 1 cut(s) 655
Eam1104I CTCTTC 1 cut(s) 213
EarI CTCTTC 1 cut(s) 213
Eco130I CCWWGG 1 cut(s) 306
Eco47I GGWCC 1 cut(s) 817
Eco57I CTGAAG 1 cut(s) 431
Eco88I CYCGRG 2 cut(s) 759, 926
Eco91I GGTNACC 1 cut(s) 575
EcoO65I GGTNACC 1 cut(s) 575
EcoRII CCWGG 1 cut(s) 813
EcoT14I CCWWGG 1 cut(s) 306
ErhI CCWWGG 1 cut(s) 306
FaeI CATG 5 cut(s) 106, 310, 439, 1016, 1046
FaqI GGGAC 1 cut(s) 887
FatI CATG 5 cut(s) 102, 306, 435, 1012, 1042
Fnu4HI GCNGC 4 cut(s) 399, 504, 933, 936
FokI GGATG 4 cut(s) 163, 429, 905, 976
Fsp4HI GCNGC 4 cut(s) 399, 504, 933, 936
FspBI CTAG 2 cut(s) 165, 858
GluI GCNGC 4 cut(s) 399, 504, 933, 936
GsaI CCCAGC 3 cut(s) 45, 705, 1035
Hin1II CATG 5 cut(s) 106, 310, 439, 1016, 1046
HincII GTYRAC 1 cut(s) 948
HindII GTYRAC 1 cut(s) 948
HinfI GANTC 7 cut(s) 25, 161, 430, 482, 515, 605, 1025
HpaI GTTAAC 1 cut(s) 948
HphI GGTGA 1 cut(s) 1012
Hpy166II GTNNAC 3 cut(s) 60, 100, 948
Hpy188I TCNGA 6 cut(s) 30, 411, 520, 652, 770, 942
Hpy188III TCNNGA 2 cut(s) 436, 536
Hpy8I GTNNAC 3 cut(s) 60, 100, 948
HpyAV CCTTC 2 cut(s) 248, 406
HpyCH4III ACNGT 4 cut(s) 355, 386, 616, 776
HpyCH4IV ACGT 2 cut(s) 588, 876
HpyCH4V TGCA 8 cut(s) 9, 60, 106, 282, 503, 800, 959, 977
HpyF10VI GCNNNNNNNGC 3 cut(s) 560, 635, 1028
HpyF3I CTNAG 3 cut(s) 266, 568, 651
HpySE526I ACGT 2 cut(s) 588, 876
Hsp92II CATG 5 cut(s) 106, 310, 439, 1016, 1046
KspAI GTTAAC 1 cut(s) 948
Kzo9I GATC 1 cut(s) 655
LmnI GCTCC 1 cut(s) 415
Lsp1109I GCAGC 3 cut(s) 385, 515, 947
LweI GCATC 4 cut(s) 427, 451, 490, 883
MaeI CTAG 2 cut(s) 165, 858
MaeII ACGT 2 cut(s) 588, 876
MaeIII GTNAC 2 cut(s) 380, 575
MalI GATC 1 cut(s) 657
MboI GATC 1 cut(s) 655
MboII GAAGA 4 cut(s) 230, 845, 929, 932
MhlI GDGCHC 2 cut(s) 62, 855
MluCI AATT 8 cut(s) 128, 369, 467, 639, 690, 788, 836, 842
MlyI GAGTC 2 cut(s) 34, 1034
MmeI TCCRAC 1 cut(s) 580
MseI TTAA 3 cut(s) 132, 146, 947
MslI CAYNNNNRTG 2 cut(s) 713, 998
MspR9I CCNGG 1 cut(s) 815
MvaI CCWGG 1 cut(s) 815
MvnI CGCG 1 cut(s) 126
MwoI GCNNNNNNNGC 3 cut(s) 560, 635, 1028
NcoI CCATGG 1 cut(s) 306
NdeII GATC 1 cut(s) 655
NlaIII CATG 5 cut(s) 106, 310, 439, 1016, 1046
NlaIV GGNNCC 4 cut(s) 122, 187, 882, 1007
NmuCI GTSAC 1 cut(s) 380
NspI RCATGY 1 cut(s) 106
PagI TCATGA 1 cut(s) 435
PfeI GAWTC 5 cut(s) 161, 430, 482, 515, 605
PfoI TCCNGGA 1 cut(s) 813
PkrI GCNGC 4 cut(s) 400, 505, 934, 937
PleI GAGTC 2 cut(s) 33, 1033
PpsI GAGTC 2 cut(s) 33, 1033
Psp6I CCWGG 1 cut(s) 813
PspEI GGTNACC 1 cut(s) 575
PspFI CCCAGC 3 cut(s) 41, 701, 1031
PspGI CCWGG 1 cut(s) 813
PspN4I GGNNCC 4 cut(s) 122, 187, 882, 1007
PspPI GGNCC 1 cut(s) 817
PstNI CAGNNNCTG 2 cut(s) 806, 1028
RsaI GTAC 1 cut(s) 613
RsaNI GTAC 1 cut(s) 612
RseI CAYNNNNRTG 2 cut(s) 713, 998
SaqAI TTAA 3 cut(s) 132, 146, 947
SatI GCNGC 4 cut(s) 399, 504, 933, 936
Sau3AI GATC 1 cut(s) 655
Sau96I GGNCC 1 cut(s) 817
SchI GAGTC 2 cut(s) 34, 1034
ScrFI CCNGG 1 cut(s) 815
SduI GDGCHC 2 cut(s) 62, 855
SfaNI GCATC 4 cut(s) 427, 451, 490, 883
SinI GGWCC 1 cut(s) 817
SmiMI CAYNNNNRTG 2 cut(s) 713, 998
Sse9I AATT 8 cut(s) 128, 369, 467, 639, 690, 788, 836, 842
SsiI CCGC 2 cut(s) 124, 932
SspMI CTAG 2 cut(s) 165, 858
StyD4I CCNGG 1 cut(s) 813
StyI CCWWGG 1 cut(s) 306
TaaI ACNGT 4 cut(s) 355, 386, 616, 776
TaiI ACGT 2 cut(s) 591, 879
TaqI TCGA 1 cut(s) 670
TasI AATT 8 cut(s) 128, 369, 467, 639, 690, 788, 836, 842
TauI GCSGC 1 cut(s) 935
TfiI GAWTC 5 cut(s) 161, 430, 482, 515, 605
Tru1I TTAA 3 cut(s) 132, 146, 947
Tru9I TTAA 3 cut(s) 132, 146, 947
TscAI CASTG 1 cut(s) 241
TseFI GTSAC 1 cut(s) 380
TseI GCWGC 3 cut(s) 398, 503, 935
Tsp45I GTSAC 1 cut(s) 380
TspDTI ATGAA 3 cut(s) 231, 452, 846
TspRI CASTG 1 cut(s) 241
VneI GTGCAC 1 cut(s) 58
VpaK11BI GGWCC 1 cut(s) 817
XapI RAATTY 3 cut(s) 128, 369, 836
XceI RCATGY 1 cut(s) 106
XspI CTAG 2 cut(s) 165, 858
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.