Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0005547

Physical Location & Seq

Genomic Coordinates Reverse (-)

23185743 .. 23186450

Gene Structure 708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g32184.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGATCGGCGGTTCTATGGAATCTTTCGGAATCATCGTCATTCTGGGTTTTGTCATGGCCATAATCTATGTGTTCATCGATTTAAGAAGATGTGTTATCGACCCCCACCACTCATACATTCAAGTAACTCATGCTTCGCTTGCCGAGTTCAATAGGACCACCATCAACACCCTCCATTATAATCTCTTACTCCATATCACCCTCCAAAACCCCAACAACAATTTCGACGTCTATTATGATAGCATGGTAGTCATGGCTTATTATGAAAACCAGAGGTTTATTATGGAGAATCACTCGCATGTAGTTTACCAAGGGAAGAGAAACACAACTCATCTCACACTGTCACTCAAAGGAGAGAAGGACATGGACAACACTATTGGGGTGGTTGAGGAGGGGCATCATCAAGAGCGTCTTGATTCCGAGGTTGAGCAGAAGCAGCAACAATGCAGATGTGACAACAATGGTGATGAAAGAAACAAGAAGTCTGGATATGATATTCTCGTCAGGTTCTATCTTGAAACTACTGCAATGCCAAACCCTAAGTCGTTCATCAGGATGAATTGGATGGGGAACTCTCAATTCACATGTAACTTGAAAAGGGTTCCATTGATCACAGCGTCTAATTATAATCCTCGTTCCTTCATGAATAATATTGCCAAGTGTAATACCGATTTCTATCGCGTATCTCATCCTCCTGGCAGTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0007275 GO:0007568 GO:0008150 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009615 GO:0010150 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0055044 GO:0071944 GO:0090693 GO:0098542 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

236

Amino Acids

27.21

Weight (kDa)

6.82

Isoelectric Point (pI)

40.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_2	PF03168	65 - 117	3.3e-06	Late embryogenesis abundant protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005547)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g32184 FvH4_7g32210
rosa_chinensis	RchiOBHm_Chr3g0448411
rosa_multiflora	Rmu_sc0003308.1_g000008 Rmu_sc0008418.1_g000004 Rmu_sc0008418.1_g000005 Rmu_sc0010238.1_g000009 Rmu_sc0010238.1_g000010
rosa_roxburghii	Rroxscaffold_4G00278410 Rroxscaffold_4G00278420 Rroxscaffold_6G00426600
rosa_rugosa	Rorug02G0612200
rosa_samantha	Rh1AG454600 Rh1AG454700 Rh1BG411900 Rh1BG412000 Rh1CG426500 Rh1DG444100 Rh1DG444200 Rh3AG011500 Rh3AG011600 Rh3BG011300 Rh3BG011400 Rh3CG011000 Rh3CG011100 Rh3DG011700 Rh3DG011800
rosa_wichuraiana	Rw0G013340 Rw0G013350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	180, 627
AatII	GACGTC	1 cut(s)	231
AccII	CGCG	1 cut(s)	681
AciI	CCGC	1 cut(s)	9
AcoI	YGGCCR	1 cut(s)	57
AcyI	GRCGYC	1 cut(s)	228
AfiI	CCNNNNNNNGG	1 cut(s)	701
AflIII	ACRYGT	1 cut(s)	584
AgsI	TTSAA	4 cut(s)	122, 151, 518, 595
AjnI	CCWGG	1 cut(s)	694
AjuI	GAANNNNNNNTTGG	2 cut(s)	206, 238
AoxI	GGCC	1 cut(s)	57
ApeKI	GCWGC	1 cut(s)	436
ArsI	GACNNNNNNTTYG	2 cut(s)	527, 559
AspS9I	GGNCC	1 cut(s)	156
AsuHPI	GGTGA	2 cut(s)	190, 476
AvaII	GGWCC	1 cut(s)	156
BalI	TGGCCA	1 cut(s)	59
BbvI	GCAGC	1 cut(s)	448
BccI	CCATC	2 cut(s)	170, 559
BciT130I	CCWGG	1 cut(s)	696
BclI	TGATCA	1 cut(s)	609
BisI	GCNGC	1 cut(s)	437
BlsI	GCNGC	1 cut(s)	438
Bme1390I	CCNGG	1 cut(s)	696
Bme18I	GGWCC	1 cut(s)	156
BmgT120I	GGNCC	1 cut(s)	156
BmiI	GGNNCC	1 cut(s)	603
BmrFI	CCNGG	1 cut(s)	696
BmsI	GCATC	1 cut(s)	406
BplI	GAGNNNNNCTC	2 cut(s)	278, 310
Bsa29I	ATCGAT	1 cut(s)	78
BsaBI	GATNNNNATC	1 cut(s)	675
BsaHI	GRCGYC	1 cut(s)	228
BsaJI	CCNNGG	2 cut(s)	310, 420
Bsc4I	CCNNNNNNNGG	1 cut(s)	701
Bse3DI	GCAATG	1 cut(s)	534
Bse8I	GATNNNNATC	1 cut(s)	675
BseBI	CCWGG	1 cut(s)	696
BseCI	ATCGAT	1 cut(s)	78
BseDI	CCNNGG	2 cut(s)	310, 420
BseGI	GGATG	3 cut(s)	561, 570, 688
BseJI	GATNNNNATC	1 cut(s)	675
BseLI	CCNNNNNNNGG	1 cut(s)	701
BseMI	GCAATG	1 cut(s)	534
BseRI	GAGGAG	1 cut(s)	404
BseXI	GCAGC	1 cut(s)	448
Bsh1236I	CGCG	1 cut(s)	681
BshFI	GGCC	1 cut(s)	59
BshVI	ATCGAT	1 cut(s)	78
BslI	CCNNNNNNNGG	1 cut(s)	701
BsnI	GGCC	1 cut(s)	59
Bsp143I	GATC	2 cut(s)	3, 609
BspACI	CCGC	1 cut(s)	9
BspANI	GGCC	1 cut(s)	59
BspDI	ATCGAT	1 cut(s)	78
BspFNI	CGCG	1 cut(s)	681
BspHI	TCATGA	1 cut(s)	642
BspLI	GGNNCC	1 cut(s)	603
BsrDI	GCAATG	1 cut(s)	534
BssECI	CCNNGG	2 cut(s)	310, 420
BssMI	GATC	2 cut(s)	3, 609
BssNI	GRCGYC	1 cut(s)	228
BssT1I	CCWWGG	1 cut(s)	310
Bst2UI	CCWGG	1 cut(s)	696
Bst4CI	ACNGT	1 cut(s)	342
Bst6I	CTCTTC	1 cut(s)	311
BstACI	GRCGYC	1 cut(s)	228
BstC8I	GCNNGC	1 cut(s)	141
BstDEI	CTNAG	1 cut(s)	540
BstF5I	GGATG	3 cut(s)	561, 570, 688
BstFNI	CGCG	1 cut(s)	681
BstKTI	GATC	2 cut(s)	6, 612
BstMBI	GATC	2 cut(s)	3, 609
BstMWI	GCNNNNNNNGC	2 cut(s)	140, 436
BstNI	CCWGG	1 cut(s)	696
BstNSI	RCATGY	2 cut(s)	302, 588
BstSCI	CCNGG	1 cut(s)	694
BstUI	CGCG	1 cut(s)	681
BstV1I	GCAGC	1 cut(s)	448
Bsu15I	ATCGAT	1 cut(s)	78
BsuRI	GGCC	1 cut(s)	59
BsuTUI	ATCGAT	1 cut(s)	78
BtsCI	GGATG	3 cut(s)	561, 570, 688
BtsI	GCAGTG	1 cut(s)	706
BtsIMutI	CAGTG	2 cut(s)	338, 706
Cac8I	GCNNGC	1 cut(s)	141
CciI	TCATGA	1 cut(s)	642
Cfr13I	GGNCC	1 cut(s)	156
ClaI	ATCGAT	1 cut(s)	78
CseI	GACGC	2 cut(s)	398, 606
CviAII	CATG	8 cut(s)	55, 131, 244, 253, 299, 364, 585, 643
CviJI	RGCY	2 cut(s)	59, 257
CviKI_1	RGCY	2 cut(s)	59, 257
DdeI	CTNAG	1 cut(s)	540
DpnI	GATC	2 cut(s)	5, 611
DpnII	GATC	2 cut(s)	3, 609
EaeI	YGGCCR	1 cut(s)	57
Eam1104I	CTCTTC	1 cut(s)	311
EarI	CTCTTC	1 cut(s)	311
Eco130I	CCWWGG	1 cut(s)	310
Eco47I	GGWCC	1 cut(s)	156
EcoRII	CCWGG	1 cut(s)	694
EcoT14I	CCWWGG	1 cut(s)	310
ErhI	CCWWGG	1 cut(s)	310
FaeI	CATG	8 cut(s)	58, 134, 247, 256, 302, 367, 588, 646
FalI	AAGNNNNNCTT	2 cut(s)	396, 428
FatI	CATG	8 cut(s)	54, 130, 243, 252, 298, 363, 584, 642
FbaI	TGATCA	1 cut(s)	609
Fnu4HI	GCNGC	1 cut(s)	437
FokI	GGATG	3 cut(s)	568, 577, 675
Fsp4HI	GCNGC	1 cut(s)	437
GluI	GCNGC	1 cut(s)	437
HaeIII	GGCC	1 cut(s)	59
HgaI	GACGC	2 cut(s)	398, 606
Hin1I	GRCGYC	1 cut(s)	228
Hin1II	CATG	8 cut(s)	58, 134, 247, 256, 302, 367, 588, 646
HinfI	GANTC	4 cut(s)	20, 30, 289, 416
HphI	GGTGA	2 cut(s)	190, 476
Hpy166II	GTNNAC	1 cut(s)	307
Hpy188I	TCNGA	2 cut(s)	29, 421
Hpy188III	TCNNGA	6 cut(s)	404, 413, 486, 515, 553, 643
Hpy8I	GTNNAC	1 cut(s)	307
Hpy99I	CGWCG	1 cut(s)	230
HpyAV	CCTTC	2 cut(s)	352, 649
HpyCH4III	ACNGT	1 cut(s)	342
HpyCH4IV	ACGT	1 cut(s)	228
HpyCH4V	TGCA	2 cut(s)	447, 527
HpyF10VI	GCNNNNNNNGC	2 cut(s)	140, 436
HpyF3I	CTNAG	1 cut(s)	540
HpySE526I	ACGT	1 cut(s)	228
Hsp92I	GRCGYC	1 cut(s)	228
Hsp92II	CATG	8 cut(s)	58, 134, 247, 256, 302, 367, 588, 646
Ksp22I	TGATCA	1 cut(s)	609
Kzo9I	GATC	2 cut(s)	3, 609
LpnPI	CCDG	6 cut(s)	29, 284, 471, 490, 538, 681
Lsp1109I	GCAGC	1 cut(s)	448
LweI	GCATC	1 cut(s)	406
MaeII	ACGT	1 cut(s)	228
MaeIII	GTNAC	4 cut(s)	124, 342, 452, 587
MalI	GATC	2 cut(s)	5, 611
MboI	GATC	2 cut(s)	3, 609
MboII	GAAGA	2 cut(s)	99, 328
MlsI	TGGCCA	1 cut(s)	59
MluCI	AATT	4 cut(s)	220, 559, 578, 622
MluNI	TGGCCA	1 cut(s)	59
MnlI	CCTC	8 cut(s)	182, 212, 267, 382, 385, 415, 642, 702
Mox20I	TGGCCA	1 cut(s)	59
MscI	TGGCCA	1 cut(s)	59
MseI	TTAA	1 cut(s)	83
MslI	CAYNNNNRTG	2 cut(s)	297, 554
Msp20I	TGGCCA	1 cut(s)	59
MspR9I	CCNGG	1 cut(s)	696
MvaI	CCWGG	1 cut(s)	696
MvnI	CGCG	1 cut(s)	681
MwoI	GCNNNNNNNGC	2 cut(s)	140, 436
NdeII	GATC	2 cut(s)	3, 609
NlaIII	CATG	8 cut(s)	58, 134, 247, 256, 302, 367, 588, 646
NlaIV	GGNNCC	1 cut(s)	603
NmeAIII	GCCGAG	1 cut(s)	169
NmuCI	GTSAC	2 cut(s)	342, 452
NspI	RCATGY	2 cut(s)	302, 588
PagI	TCATGA	1 cut(s)	642
PciI	ACATGT	1 cut(s)	584
PcsI	WCGNNNNNNNCGW	1 cut(s)	33
PfeI	GAWTC	4 cut(s)	20, 30, 289, 416
PkrI	GCNGC	1 cut(s)	438
PscI	ACATGT	1 cut(s)	584
PsiI	TTATAA	2 cut(s)	180, 627
Psp6I	CCWGG	1 cut(s)	694
PspGI	CCWGG	1 cut(s)	694
PspN4I	GGNNCC	1 cut(s)	603
PspPI	GGNCC	1 cut(s)	156
RseI	CAYNNNNRTG	2 cut(s)	297, 554
SaqAI	TTAA	1 cut(s)	83
SatI	GCNGC	1 cut(s)	437
Sau3AI	GATC	2 cut(s)	3, 609
Sau96I	GGNCC	1 cut(s)	156
ScrFI	CCNGG	1 cut(s)	696
SetI	ASST	4 cut(s)	231, 278, 426, 509
SfaNI	GCATC	1 cut(s)	406
SinI	GGWCC	1 cut(s)	156
SmiMI	CAYNNNNRTG	2 cut(s)	297, 554
Sse9I	AATT	4 cut(s)	220, 559, 578, 622
SsiI	CCGC	1 cut(s)	9
SspI	AATATT	1 cut(s)	652
StyD4I	CCNGG	1 cut(s)	694
StyI	CCWWGG	1 cut(s)	310
TaaI	ACNGT	1 cut(s)	342
TaiI	ACGT	1 cut(s)	231
TaqI	TCGA	3 cut(s)	78, 99, 225
TasI	AATT	4 cut(s)	220, 559, 578, 622
TfiI	GAWTC	4 cut(s)	20, 30, 289, 416
Tru1I	TTAA	1 cut(s)	83
Tru9I	TTAA	1 cut(s)	83
TscAI	CASTG	2 cut(s)	345, 706
TseFI	GTSAC	2 cut(s)	342, 452
TseI	GCWGC	1 cut(s)	436
Tsp45I	GTSAC	2 cut(s)	342, 452
TspDTI	ATGAA	7 cut(s)	64, 279, 483, 538, 572, 631, 659
TspRI	CASTG	2 cut(s)	345, 706
VpaK11BI	GGWCC	1 cut(s)	156
XceI	RCATGY	2 cut(s)	302, 588
ZraI	GACGTC	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.