YLS9-like
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_7g32184 FvH4_7g32210 |
| rosa_chinensis | RchiOBHm_Chr3g0448411 |
| rosa_multiflora | Rmu_sc0003308.1_g000008 Rmu_sc0008418.1_g000004 Rmu_sc0008418.1_g000005 Rmu_sc0010238.1_g000009 Rmu_sc0010238.1_g000010 |
| rosa_roxburghii | Rroxscaffold_4G00278410 Rroxscaffold_4G00278420 Rroxscaffold_6G00426600 |
| rosa_rugosa | Rorug02G0612200 |
| rosa_samantha | Rh1AG454600 Rh1AG454700 Rh1BG411900 Rh1BG412000 Rh1CG426500 Rh1DG444100 Rh1DG444200 Rh3AG011500 Rh3AG011600 Rh3BG011300 Rh3BG011400 Rh3CG011000 Rh3CG011100 Rh3DG011700 Rh3DG011800 |
| rosa_wichuraiana | Rw0G013340 Rw0G013350 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 312 |
| AciI | CCGC | 1 cut(s) | 192 |
| AclWI | GGATC | 2 cut(s) | 52, 65 |
| AcsI | RAATTY | 1 cut(s) | 337 |
| AcuI | CTGAAG | 1 cut(s) | 163 |
| AfaI | GTAC | 1 cut(s) | 184 |
| AgsI | TTSAA | 3 cut(s) | 47, 175, 296 |
| AluBI | AGCT | 1 cut(s) | 232 |
| AluI | AGCT | 1 cut(s) | 232 |
| AlwI | GGATC | 2 cut(s) | 52, 65 |
| Ama87I | CYCGRG | 1 cut(s) | 50 |
| ApeKI | GCWGC | 1 cut(s) | 98 |
| ApoI | RAATTY | 1 cut(s) | 337 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 35 |
| AvaI | CYCGRG | 1 cut(s) | 50 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 166, 199 |
| BamHI | GGATCC | 1 cut(s) | 57 |
| BbvCI | CCTCAGC | 1 cut(s) | 62 |
| BbvI | GCAGC | 1 cut(s) | 85 |
| BceAI | ACGGC | 1 cut(s) | 289 |
| BisI | GCNGC | 1 cut(s) | 99 |
| BlsI | GCNGC | 1 cut(s) | 100 |
| BmeT110I | CYCGRG | 1 cut(s) | 50 |
| BmiI | GGNNCC | 1 cut(s) | 59 |
| BmsI | GCATC | 1 cut(s) | 285 |
| Bpu10I | CCTNAGC | 2 cut(s) | 6, 62 |
| Bse3DI | GCAATG | 1 cut(s) | 132 |
| BseMI | GCAATG | 1 cut(s) | 132 |
| BseMII | CTCAG | 1 cut(s) | 76 |
| BseRI | GAGGAG | 1 cut(s) | 59 |
| BseXI | GCAGC | 1 cut(s) | 85 |
| Bsh1285I | CGRYCG | 1 cut(s) | 192 |
| BsiEI | CGRYCG | 1 cut(s) | 192 |
| BsiHKCI | CYCGRG | 1 cut(s) | 50 |
| BsoBI | CYCGRG | 1 cut(s) | 50 |
| Bsp143I | GATC | 1 cut(s) | 57 |
| BspACI | CCGC | 1 cut(s) | 192 |
| BspCNI | CTCAG | 1 cut(s) | 75 |
| BspHI | TCATGA | 1 cut(s) | 105 |
| BspLI | GGNNCC | 1 cut(s) | 59 |
| BspPI | GGATC | 2 cut(s) | 52, 65 |
| BsrDI | GCAATG | 1 cut(s) | 132 |
| BssMI | GATC | 1 cut(s) | 57 |
| Bst4CI | ACNGT | 2 cut(s) | 20, 91 |
| Bst6I | CTCTTC | 2 cut(s) | 122, 346 |
| BstC8I | GCNNGC | 2 cut(s) | 165, 303 |
| BstDEI | CTNAG | 2 cut(s) | 6, 62 |
| BstKTI | GATC | 1 cut(s) | 60 |
| BstMBI | GATC | 1 cut(s) | 57 |
| BstMCI | CGRYCG | 1 cut(s) | 192 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 164 |
| BstV1I | GCAGC | 1 cut(s) | 85 |
| BstX2I | RGATCY | 1 cut(s) | 57 |
| BstYI | RGATCY | 1 cut(s) | 57 |
| BtgZI | GCGATG | 1 cut(s) | 229 |
| BtsIMutI | CAGTG | 2 cut(s) | 87, 214 |
| Cac8I | GCNNGC | 2 cut(s) | 165, 303 |
| CciI | TCATGA | 1 cut(s) | 105 |
| Csp6I | GTAC | 1 cut(s) | 183 |
| CviAII | CATG | 3 cut(s) | 106, 155, 331 |
| CviJI | RGCY | 5 cut(s) | 5, 36, 66, 232, 305 |
| CviKI_1 | RGCY | 5 cut(s) | 5, 36, 66, 232, 305 |
| CviQI | GTAC | 1 cut(s) | 183 |
| DdeI | CTNAG | 2 cut(s) | 6, 62 |
| DpnI | GATC | 1 cut(s) | 59 |
| DpnII | GATC | 1 cut(s) | 57 |
| Eam1104I | CTCTTC | 2 cut(s) | 122, 346 |
| EarI | CTCTTC | 2 cut(s) | 122, 346 |
| Eco57I | CTGAAG | 1 cut(s) | 163 |
| Eco88I | CYCGRG | 1 cut(s) | 50 |
| FaeI | CATG | 3 cut(s) | 109, 158, 334 |
| FaiI | YATR | 5 cut(s) | 107, 156, 312, 332, 361 |
| FatI | CATG | 3 cut(s) | 105, 154, 330 |
| Fnu4HI | GCNGC | 1 cut(s) | 99 |
| Fsp4HI | GCNGC | 1 cut(s) | 99 |
| GluI | GCNGC | 1 cut(s) | 99 |
| Hin1II | CATG | 3 cut(s) | 109, 158, 334 |
| HindIII | AAGCTT | 1 cut(s) | 230 |
| Hpy188I | TCNGA | 2 cut(s) | 145, 254 |
| Hpy188III | TCNNGA | 2 cut(s) | 44, 106 |
| HpyAV | CCTTC | 1 cut(s) | 50 |
| HpyCH4III | ACNGT | 2 cut(s) | 20, 91 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 164 |
| HpyF3I | CTNAG | 2 cut(s) | 6, 62 |
| Hsp92II | CATG | 3 cut(s) | 109, 158, 334 |
| Kzo9I | GATC | 1 cut(s) | 57 |
| LpnPI | CCDG | 1 cut(s) | 287 |
| Lsp1109I | GCAGC | 1 cut(s) | 85 |
| LweI | GCATC | 1 cut(s) | 285 |
| MaeIII | GTNAC | 1 cut(s) | 20 |
| MalI | GATC | 1 cut(s) | 59 |
| MboI | GATC | 1 cut(s) | 57 |
| MboII | GAAGA | 3 cut(s) | 109, 212, 363 |
| MflI | RGATCY | 1 cut(s) | 57 |
| MluCI | AATT | 3 cut(s) | 139, 202, 337 |
| MmeI | TCCRAC | 1 cut(s) | 232 |
| MnlI | CCTC | 7 cut(s) | 46, 71, 77, 80, 125, 315, 347 |
| MroXI | GAANNNNTTC | 1 cut(s) | 35 |
| MseI | TTAA | 1 cut(s) | 234 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 164 |
| NdeII | GATC | 1 cut(s) | 57 |
| NlaIII | CATG | 3 cut(s) | 109, 158, 334 |
| NlaIV | GGNNCC | 1 cut(s) | 59 |
| NmeAIII | GCCGAG | 1 cut(s) | 193 |
| PaeR7I | CTCGAG | 1 cut(s) | 50 |
| PagI | TCATGA | 1 cut(s) | 105 |
| PdmI | GAANNNNTTC | 1 cut(s) | 35 |
| PkrI | GCNGC | 1 cut(s) | 100 |
| PsiI | TTATAA | 1 cut(s) | 312 |
| PspN4I | GGNNCC | 1 cut(s) | 59 |
| PspXI | VCTCGAGB | 1 cut(s) | 50 |
| PsuI | RGATCY | 1 cut(s) | 57 |
| RsaI | GTAC | 1 cut(s) | 184 |
| RsaNI | GTAC | 1 cut(s) | 183 |
| SaqAI | TTAA | 1 cut(s) | 234 |
| SatI | GCNGC | 1 cut(s) | 99 |
| Sau3AI | GATC | 1 cut(s) | 57 |
| SetI | ASST | 2 cut(s) | 234, 326 |
| SfaNI | GCATC | 1 cut(s) | 285 |
| Sfr274I | CTCGAG | 1 cut(s) | 50 |
| SlaI | CTCGAG | 1 cut(s) | 50 |
| SmlI | CTYRAG | 1 cut(s) | 50 |
| SmoI | CTYRAG | 1 cut(s) | 50 |
| Sse9I | AATT | 3 cut(s) | 139, 202, 337 |
| SsiI | CCGC | 1 cut(s) | 192 |
| SspI | AATATT | 1 cut(s) | 217 |
| TaaI | ACNGT | 2 cut(s) | 20, 91 |
| TaqI | TCGA | 1 cut(s) | 51 |
| TasI | AATT | 3 cut(s) | 139, 202, 337 |
| Tru1I | TTAA | 1 cut(s) | 234 |
| Tru9I | TTAA | 1 cut(s) | 234 |
| TscAI | CASTG | 2 cut(s) | 94, 214 |
| TseI | GCWGC | 1 cut(s) | 98 |
| TspRI | CASTG | 2 cut(s) | 94, 214 |
| XapI | RAATTY | 1 cut(s) | 337 |
| XhoI | CTCGAG | 1 cut(s) | 50 |
| XmnI | GAANNNNTTC | 1 cut(s) | 35 |