Rroxscaffold_4G00278420

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0005547
Physical Location & Seq
Forward (+)
1422535 .. 1423245
711 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00278420.1

Sequence Viewer

Length: 711 bp
ATGGTGACCGCTTATACATTGCGTAGTTGCTTCGACATATGCTCTACTATTTGTTTTATCTGTGTTGTTGTCAAGTGCGTCACCACAATTGGTATTGCGATGAAGAGAGAATCTAAACCTCCCCATCACTCAAACATTCATGTAACTCATGCTTCGCTCACCGAATTCACCATCATCACCACTAAGAACACTAACACCCTCCGCTATAATCTTGTCTTCCACACCACCCTCCAAAACCCCAACAAAGATTTCGGCATACATTATCATAACATTACGGTCATGGCTTATTACCAAGGGAAGAGGTTTGTTGCGGAGAGCTACTCTTATATGTTTTACCAAGAGAAAAATGATACAACTCTTCTCAAATTGTCATTCAGAGGACAGCAGGACATGGATACTCTTGGGGTTGAAAAGGATCTTAATTCCGAGGCTAAGCATCAGTGTGCACACGTCGAGGACAAAAATGCTGGATCAGCTAATAATAATTACGACATCTTTGTCAGACTCTATCTTCAAAACACTGCAATCCCTAAGGCGCCGTTTAAGAAGAATTGGAAAGTGAACTCCCAGTTCATATGCGACTTGAAGAAGGTTCCGTTGATCAAGTCGGCGAATTATTTCCCTAGTACTTTTAAGACTATCGAATGTGATTCCTATTTGCCGCAAGTATATCATGCACCCGGCCTTAAGAGTAAACGATTTGTTTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

236

Amino Acids

27.21

Weight (kDa)

9.16

Isoelectric Point (pI)

44.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 76 - 129 9.3e-07 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 497
AccB1I GGYRCC 1 cut(s) 535
AciI CCGC 4 cut(s) 9, 202, 311, 662
AclWI GGATC 2 cut(s) 423, 478
AcsI RAATTY 1 cut(s) 164
AcyI GRCGYC 1 cut(s) 536
AfaI GTAC 1 cut(s) 628
AflII CTTAAG 1 cut(s) 686
AflIII ACRYGT 1 cut(s) 448
AgsI TTSAA 3 cut(s) 410, 515, 586
AjiI CACGTC 1 cut(s) 451
AjuI GAANNNNNNNTTGG 2 cut(s) 233, 265
AluBI AGCT 2 cut(s) 318, 476
AluI AGCT 2 cut(s) 318, 476
Alw21I GWGCWC 1 cut(s) 448
Alw44I GTGCAC 1 cut(s) 444
AlwI GGATC 2 cut(s) 423, 478
AoxI GGCC 1 cut(s) 682
ApaLI GTGCAC 1 cut(s) 444
ApoI RAATTY 1 cut(s) 164
Asp700I GAANNNNTTC 1 cut(s) 617
AspLEI GCGC 1 cut(s) 538
AsuC2I CCSGG 1 cut(s) 681
AsuHPI GGTGA 5 cut(s) 16, 73, 151, 160, 169
AxyI CCTNAGG 1 cut(s) 531
BaeGI GKGCMC 1 cut(s) 448
BanI GGYRCC 1 cut(s) 535
BbsI GAAGAC 1 cut(s) 208
Bbv12I GWGCWC 1 cut(s) 448
BccI CCATC 2 cut(s) 132, 179
BceAI ACGGC 1 cut(s) 523
BciVI GTATCC 1 cut(s) 388
BclI TGATCA 1 cut(s) 600
BcnI CCSGG 1 cut(s) 681
BfaI CTAG 1 cut(s) 624
BfoI RGCGCY 1 cut(s) 539
BfrI CTTAAG 1 cut(s) 686
BfuI GTATCC 1 cut(s) 388
BisI GCNGC 1 cut(s) 662
BlpI GCTNAGC 1 cut(s) 432
BlsI GCNGC 1 cut(s) 663
BmcAI AGTACT 1 cut(s) 628
Bme1390I CCNGG 1 cut(s) 681
BmgBI CACGTC 1 cut(s) 451
BmiI GGNNCC 2 cut(s) 537, 594
BmrFI CCNGG 1 cut(s) 681
BmrI ACTGGG 1 cut(s) 562
BmsI GCATC 1 cut(s) 445
BmuI ACTGGG 1 cut(s) 562
BpiI GAAGAC 1 cut(s) 208
BplI GAGNNNNNCTC 2 cut(s) 305, 337
Bpu1102I GCTNAGC 1 cut(s) 432
BpuMI CCSGG 1 cut(s) 681
BsaHI GRCGYC 1 cut(s) 536
BsaJI CCNNGG 2 cut(s) 292, 426
Bse1I ACTGG 1 cut(s) 568
Bse21I CCTNAGG 1 cut(s) 531
Bse3DI GCAATG 1 cut(s) 17
BseDI CCNNGG 2 cut(s) 292, 426
BseMI GCAATG 1 cut(s) 17
BseNI ACTGG 1 cut(s) 568
BseSI GKGCMC 1 cut(s) 448
BshFI GGCC 1 cut(s) 684
BshNI GGYRCC 1 cut(s) 535
BsiHKAI GWGCWC 1 cut(s) 448
BsiSI CCGG 1 cut(s) 681
BsnI GGCC 1 cut(s) 684
Bsp1286I GDGCHC 1 cut(s) 448
Bsp143I GATC 3 cut(s) 415, 470, 600
Bsp1720I GCTNAGC 1 cut(s) 432
BspACI CCGC 4 cut(s) 9, 202, 311, 662
BspANI GGCC 1 cut(s) 684
BspLI GGNNCC 2 cut(s) 537, 594
BspPI GGATC 2 cut(s) 423, 478
BspT107I GGYRCC 1 cut(s) 535
BspTI CTTAAG 1 cut(s) 686
BsrDI GCAATG 1 cut(s) 17
BsrI ACTGG 1 cut(s) 568
BssECI CCNNGG 2 cut(s) 292, 426
BssMI GATC 3 cut(s) 415, 470, 600
BssNI GRCGYC 1 cut(s) 536
BssT1I CCWWGG 1 cut(s) 292
Bst4CI ACNGT 1 cut(s) 277
Bst6I CTCTTC 3 cut(s) 98, 293, 363
BstACI GRCGYC 1 cut(s) 536
BstAFI CTTAAG 1 cut(s) 686
BstDEI CTNAG 3 cut(s) 183, 432, 531
BstEII GGTNACC 1 cut(s) 4
BstH2I RGCGCY 1 cut(s) 539
BstHHI GCGC 1 cut(s) 538
BstKTI GATC 3 cut(s) 418, 473, 603
BstMBI GATC 3 cut(s) 415, 470, 600
BstMWI GCNNNNNNNGC 1 cut(s) 473
BstPI GGTNACC 1 cut(s) 4
BstSCI CCNGG 1 cut(s) 679
BstSLI GKGCMC 1 cut(s) 448
BstV2I GAAGAC 1 cut(s) 208
BstX2I RGATCY 1 cut(s) 415
BstYI RGATCY 1 cut(s) 415
Bsu36I CCTNAGG 1 cut(s) 531
BsuI GTATCC 1 cut(s) 388
BsuRI GGCC 1 cut(s) 684
BtgZI GCGATG 1 cut(s) 113
BtrI CACGTC 1 cut(s) 451
BtsI GCAGTG 1 cut(s) 519
BtsIMutI CAGTG 2 cut(s) 446, 519
CfoI GCGC 1 cut(s) 538
CseI GACGC 1 cut(s) 67
Csp6I GTAC 1 cut(s) 627
CviAII CATG 5 cut(s) 140, 149, 280, 391, 674
CviJI RGCY 5 cut(s) 284, 318, 431, 476, 684
CviKI_1 RGCY 5 cut(s) 284, 318, 431, 476, 684
CviQI GTAC 1 cut(s) 627
DdeI CTNAG 3 cut(s) 183, 432, 531
DinI GGCGCC 1 cut(s) 537
DpnI GATC 3 cut(s) 417, 472, 602
DpnII GATC 3 cut(s) 415, 470, 600
DrdI GACNNNNNNGTC 1 cut(s) 497
DseDI GACNNNNNNGTC 1 cut(s) 497
Eam1104I CTCTTC 3 cut(s) 98, 293, 363
EarI CTCTTC 3 cut(s) 98, 293, 363
Eco130I CCWWGG 1 cut(s) 292
Eco81I CCTNAGG 1 cut(s) 531
Eco91I GGTNACC 1 cut(s) 4
EcoO65I GGTNACC 1 cut(s) 4
EcoRI GAATTC 1 cut(s) 164
EcoT14I CCWWGG 1 cut(s) 292
EgeI GGCGCC 1 cut(s) 537
EheI GGCGCC 1 cut(s) 537
ErhI CCWWGG 1 cut(s) 292
FaeI CATG 5 cut(s) 143, 152, 283, 394, 677
FatI CATG 5 cut(s) 139, 148, 279, 390, 673
FauNDI CATATG 2 cut(s) 38, 575
FbaI TGATCA 1 cut(s) 600
Fnu4HI GCNGC 1 cut(s) 662
Fsp4HI GCNGC 1 cut(s) 662
FspBI CTAG 1 cut(s) 624
GlaI GCGC 1 cut(s) 537
GluI GCNGC 1 cut(s) 662
HaeII RGCGCY 1 cut(s) 539
HaeIII GGCC 1 cut(s) 684
HapII CCGG 1 cut(s) 681
HgaI GACGC 1 cut(s) 67
HhaI GCGC 1 cut(s) 538
Hin1I GRCGYC 1 cut(s) 536
Hin1II CATG 5 cut(s) 143, 152, 283, 394, 677
Hin6I GCGC 1 cut(s) 536
HinP1I GCGC 1 cut(s) 536
HinfI GANTC 3 cut(s) 110, 504, 650
HpaII CCGG 1 cut(s) 681
HphI GGTGA 5 cut(s) 16, 73, 151, 160, 169
Hpy166II GTNNAC 3 cut(s) 446, 562, 695
Hpy188I TCNGA 3 cut(s) 377, 427, 503
Hpy8I GTNNAC 3 cut(s) 446, 562, 695
Hpy99I CGWCG 1 cut(s) 455
HpyAV CCTTC 1 cut(s) 583
HpyCH4III ACNGT 1 cut(s) 277
HpyCH4IV ACGT 1 cut(s) 450
HpyCH4V TGCA 3 cut(s) 446, 524, 677
HpyF10VI GCNNNNNNNGC 1 cut(s) 473
HpyF3I CTNAG 3 cut(s) 183, 432, 531
HpySE526I ACGT 1 cut(s) 450
Hsp92I GRCGYC 1 cut(s) 536
Hsp92II CATG 5 cut(s) 143, 152, 283, 394, 677
HspAI GCGC 1 cut(s) 536
KasI GGCGCC 1 cut(s) 535
Ksp22I TGATCA 1 cut(s) 600
Kzo9I GATC 3 cut(s) 415, 470, 600
LpnPI CCDG 4 cut(s) 371, 453, 581, 694
LweI GCATC 1 cut(s) 445
MaeI CTAG 1 cut(s) 624
MaeII ACGT 1 cut(s) 450
MaeIII GTNAC 3 cut(s) 4, 79, 142
MalI GATC 3 cut(s) 417, 472, 602
MboI GATC 3 cut(s) 415, 470, 600
MboII GAAGA 7 cut(s) 115, 208, 310, 350, 503, 559, 598
MfeI CAATTG 1 cut(s) 87
MflI RGATCY 1 cut(s) 415
MhlI GDGCHC 1 cut(s) 448
MluCI AATT 7 cut(s) 87, 164, 365, 421, 484, 550, 613
Mly113I GGCGCC 1 cut(s) 536
MlyI GAGTC 1 cut(s) 498
MnlI CCTC 7 cut(s) 129, 209, 239, 294, 371, 421, 448
MroXI GAANNNNTTC 1 cut(s) 617
MseI TTAA 4 cut(s) 420, 543, 633, 687
MslI CAYNNNNRTG 1 cut(s) 441
MspCI CTTAAG 1 cut(s) 686
MspI CCGG 1 cut(s) 681
MspR9I CCNGG 1 cut(s) 681
MunI CAATTG 1 cut(s) 87
MwoI GCNNNNNNNGC 1 cut(s) 473
NarI GGCGCC 1 cut(s) 536
NciI CCSGG 1 cut(s) 681
NdeI CATATG 2 cut(s) 38, 575
NdeII GATC 3 cut(s) 415, 470, 600
NlaIII CATG 5 cut(s) 143, 152, 283, 394, 677
NlaIV GGNNCC 2 cut(s) 537, 594
NmuCI GTSAC 2 cut(s) 4, 79
PdmI GAANNNNTTC 1 cut(s) 617
PfeI GAWTC 2 cut(s) 110, 650
PkrI GCNGC 1 cut(s) 663
PleI GAGTC 1 cut(s) 498
PluTI GGCGCC 1 cut(s) 539
PpsI GAGTC 1 cut(s) 498
PspEI GGTNACC 1 cut(s) 4
PspN4I GGNNCC 2 cut(s) 537, 594
PsuI RGATCY 1 cut(s) 415
RsaI GTAC 1 cut(s) 628
RsaNI GTAC 1 cut(s) 627
RseI CAYNNNNRTG 1 cut(s) 441
SaqAI TTAA 4 cut(s) 420, 543, 633, 687
SatI GCNGC 1 cut(s) 662
Sau3AI GATC 3 cut(s) 415, 470, 600
ScaI AGTACT 1 cut(s) 628
SchI GAGTC 1 cut(s) 498
ScrFI CCNGG 1 cut(s) 681
SduI GDGCHC 1 cut(s) 448
SetI ASST 6 cut(s) 121, 305, 320, 453, 478, 594
SfaNI GCATC 1 cut(s) 445
SfoI GGCGCC 1 cut(s) 537
SmiMI CAYNNNNRTG 1 cut(s) 441
SmlI CTYRAG 1 cut(s) 686
SmoI CTYRAG 1 cut(s) 686
Sse9I AATT 7 cut(s) 87, 164, 365, 421, 484, 550, 613
SsiI CCGC 4 cut(s) 9, 202, 311, 662
SspDI GGCGCC 1 cut(s) 535
SspMI CTAG 1 cut(s) 624
StyD4I CCNGG 1 cut(s) 679
StyI CCWWGG 1 cut(s) 292
TaaI ACNGT 1 cut(s) 277
TaiI ACGT 1 cut(s) 453
TaqI TCGA 3 cut(s) 33, 453, 642
TasI AATT 7 cut(s) 87, 164, 365, 421, 484, 550, 613
TatI WGTACW 1 cut(s) 626
TauI GCSGC 1 cut(s) 664
TfiI GAWTC 2 cut(s) 110, 650
Tru1I TTAA 4 cut(s) 420, 543, 633, 687
Tru9I TTAA 4 cut(s) 420, 543, 633, 687
TscAI CASTG 2 cut(s) 446, 526
TseFI GTSAC 2 cut(s) 4, 79
Tsp45I GTSAC 2 cut(s) 4, 79
TspDTI ATGAA 3 cut(s) 116, 128, 562
TspGWI ACGGA 1 cut(s) 585
TspRI CASTG 2 cut(s) 446, 526
Vha464I CTTAAG 1 cut(s) 686
VneI GTGCAC 1 cut(s) 444
XapI RAATTY 1 cut(s) 164
XmnI GAANNNNTTC 1 cut(s) 617
XspI CTAG 1 cut(s) 624
ZrmI AGTACT 1 cut(s) 628
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.