Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005547

Physical Location & Seq

Genomic Coordinates Reverse (-)

72904419 .. 72905372

Gene Structure 954 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0612200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGTCCGAAGGGAGGGATATATATAGGAGCCAAGTAAGGCAATATCAAACAACATTGCCACCAGGACGGGATAGGCAGCTTAACATATGTTTCTACAGGCAAAGCCGCTTTTGGCATGATGATCCTGCAAACTATACACATGATGAATGTACCTTGATAAGTCGCAGAGGAGTTTTTGTCACTCACGATTTCTTAACAAGTATGGACATGCGCTGGTTACTTCTTAGTGTAGGTGTTCCATTAGAAGAACAGTCACCGATTCTTGAGGAAATAATAACTCAGTTTGCTCAAGTGGCTGTCCCCGAGCTGCCTATTACTGTGGTAATACTGCACATCCGCGTTCGCTCATTAGGTAGTGTCGACTATCAGGATATCATTGATTTTGTTGCAAGAGAACCGATCAATGTTAATTTACATGCTTCCCCTATTCGTGTCACTCCTACTGCGCATGCTTCTACGGTGTCCTTGCTAGGAACATATATGTCACTTCTTACTATTCCTGCATCTAGATCCTCGATTGAAGGTTTGAAGAAAGTGAGATTTGATAGTTTGGAAGAAGATGTTATCCGAGAGACTCCAACATGTGCTATTTGTATCAAGGACTTTGTAGAATGTGTTGATGAACTGATTACTAGTTTACCCTGCGCTCACCATTATCATGTAGATTGCATTGTCCAGTGGCTGAAGAGAGATCACACTTGTCCCTTGTGCCGATACCGAATGCCACCTGCACGCATGGACGAGGATAGGGACCGGGACCGGGACGGGGACGCAGTTGAGCCATCAAATCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0007275 GO:0007568 GO:0008150 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009615 GO:0010150 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0055044 GO:0071944 GO:0090693 GO:0098542 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

264

Amino Acids

30.33

Weight (kDa)

5.45

Isoelectric Point (pI)

63.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	194 - 238	4e-11	Ring finger domain
zf-C3HC4	PF00097	195 - 237	6.4e-06	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	212 - 238	8.3e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005547)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g32184 FvH4_7g32210
rosa_chinensis	RchiOBHm_Chr3g0448411
rosa_multiflora	Rmu_sc0003308.1_g000008 Rmu_sc0008418.1_g000004 Rmu_sc0008418.1_g000005 Rmu_sc0010238.1_g000009 Rmu_sc0010238.1_g000010
rosa_roxburghii	Rroxscaffold_4G00278410 Rroxscaffold_4G00278420 Rroxscaffold_6G00426600
rosa_rugosa	Rorug02G0612200
rosa_samantha	Rh1AG454600 Rh1AG454700 Rh1BG411900 Rh1BG412000 Rh1CG426500 Rh1DG444100 Rh1DG444200 Rh3AG011500 Rh3AG011600 Rh3BG011300 Rh3BG011400 Rh3CG011000 Rh3CG011100 Rh3DG011700 Rh3DG011800
rosa_wichuraiana	Rw0G013340 Rw0G013350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	736
Acc16I	TGCGCA	1 cut(s)	447
Acc36I	ACCTGC	1 cut(s)	736
AccI	GTMKAC	1 cut(s)	360
AccII	CGCG	1 cut(s)	339
AciI	CCGC	2 cut(s)	106, 337
AclWI	GGATC	2 cut(s)	116, 504
AcuI	CTGAAG	1 cut(s)	704
AfaI	GTAC	1 cut(s)	151
AfiI	CCNNNNNNNGG	3 cut(s)	12, 760, 766
AflIII	ACRYGT	1 cut(s)	581
AgsI	TTSAA	2 cut(s)	521, 529
AhlI	ACTAGT	1 cut(s)	632
AjnI	CCWGG	1 cut(s)	61
AluBI	AGCT	2 cut(s)	79, 307
AluI	AGCT	2 cut(s)	79, 307
Alw26I	GTCTC	1 cut(s)	566
AlwI	GGATC	2 cut(s)	116, 504
AlwNI	CAGNNNCTG	1 cut(s)	682
Ama87I	CYCGRG	1 cut(s)	302
ApeKI	GCWGC	2 cut(s)	76, 307
AspLEI	GCGC	3 cut(s)	213, 448, 647
AspS9I	GGNCC	2 cut(s)	751, 757
AsuC2I	CCSGG	2 cut(s)	755, 761
AsuHPI	GGTGA	2 cut(s)	246, 641
AvaI	CYCGRG	1 cut(s)	302
AvaII	GGWCC	2 cut(s)	751, 757
BbvI	GCAGC	2 cut(s)	88, 294
BccI	CCATC	1 cut(s)	790
BciT130I	CCWGG	1 cut(s)	63
BcnI	CCSGG	2 cut(s)	755, 761
BcoDI	GTCTC	1 cut(s)	566
BcuI	ACTAGT	1 cut(s)	632
BfaI	CTAG	3 cut(s)	470, 507, 633
BfmI	CTRYAG	1 cut(s)	94
BfuAI	ACCTGC	1 cut(s)	736
BisI	GCNGC	3 cut(s)	77, 106, 308
BlsI	GCNGC	3 cut(s)	78, 107, 309
Bme1390I	CCNGG	3 cut(s)	63, 755, 761
Bme18I	GGWCC	2 cut(s)	751, 757
BmeT110I	CYCGRG	1 cut(s)	302
BmgT120I	GGNCC	2 cut(s)	751, 757
BmiI	GGNNCC	3 cut(s)	29, 752, 758
BmrFI	CCNGG	3 cut(s)	63, 755, 761
BmsI	GCATC	1 cut(s)	512
BpuEI	CTTGAG	2 cut(s)	273, 284
BpuMI	CCSGG	2 cut(s)	755, 761
BsaXI	ACNNNNNCTCC	2 cut(s)	162, 192
Bsc4I	CCNNNNNNNGG	3 cut(s)	12, 760, 766
Bse1I	ACTGG	1 cut(s)	676
Bse3DI	GCAATG	1 cut(s)	53
BseBI	CCWGG	1 cut(s)	63
BseGI	GGATG	1 cut(s)	333
BseLI	CCNNNNNNNGG	3 cut(s)	12, 760, 766
BseMI	GCAATG	1 cut(s)	53
BseMII	CTCAG	1 cut(s)	293
BseNI	ACTGG	1 cut(s)	676
BseRI	GAGGAG	1 cut(s)	183
BseXI	GCAGC	2 cut(s)	88, 294
BsgI	GTGCAG	2 cut(s)	314, 714
Bsh1236I	CGCG	1 cut(s)	339
BsiHKCI	CYCGRG	1 cut(s)	302
BsiSI	CCGG	2 cut(s)	754, 760
BslFI	GGGAC	6 cut(s)	284, 687, 764, 770, 776, 782
BslI	CCNNNNNNNGG	3 cut(s)	12, 760, 766
BsmAI	GTCTC	1 cut(s)	566
BsmFI	GGGAC	6 cut(s)	284, 687, 764, 770, 776, 782
BsmI	GAATGC	1 cut(s)	726
BsoBI	CYCGRG	1 cut(s)	302
Bsp143I	GATC	4 cut(s)	121, 399, 509, 691
BspACI	CCGC	2 cut(s)	106, 337
BspCNI	CTCAG	1 cut(s)	292
BspFNI	CGCG	1 cut(s)	339
BspLI	GGNNCC	3 cut(s)	29, 752, 758
BspMI	ACCTGC	1 cut(s)	736
BspPI	GGATC	2 cut(s)	116, 504
BsrDI	GCAATG	1 cut(s)	53
BsrI	ACTGG	1 cut(s)	676
BssMI	GATC	4 cut(s)	121, 399, 509, 691
Bst2UI	CCWGG	1 cut(s)	63
Bst4CI	ACNGT	3 cut(s)	252, 319, 460
Bst6I	CTCTTC	1 cut(s)	680
BstC8I	GCNNGC	2 cut(s)	450, 733
BstDEI	CTNAG	2 cut(s)	224, 279
BstF5I	GGATG	1 cut(s)	333
BstFNI	CGCG	1 cut(s)	339
BstHHI	GCGC	3 cut(s)	213, 448, 647
BstKTI	GATC	4 cut(s)	124, 402, 512, 694
BstMAI	GTCTC	1 cut(s)	566
BstMBI	GATC	4 cut(s)	121, 399, 509, 691
BstMWI	GCNNNNNNNGC	1 cut(s)	293
BstNI	CCWGG	1 cut(s)	63
BstNSI	RCATGY	4 cut(s)	211, 419, 452, 585
BstSCI	CCNGG	3 cut(s)	61, 753, 759
BstSFI	CTRYAG	1 cut(s)	94
BstUI	CGCG	1 cut(s)	339
BstV1I	GCAGC	2 cut(s)	88, 294
BstX2I	RGATCY	1 cut(s)	509
BstYI	RGATCY	1 cut(s)	509
BtsCI	GGATG	1 cut(s)	333
BtsIMutI	CAGTG	1 cut(s)	683
BveI	ACCTGC	1 cut(s)	736
Cac8I	GCNNGC	2 cut(s)	450, 733
CaiI	CAGNNNCTG	1 cut(s)	682
CfoI	GCGC	3 cut(s)	213, 448, 647
Cfr13I	GGNCC	2 cut(s)	751, 757
CseI	GACGC	1 cut(s)	779
Csp6I	GTAC	1 cut(s)	150
CviAII	CATG	8 cut(s)	116, 140, 208, 416, 449, 582, 659, 736
CviJI	RGCY	7 cut(s)	30, 79, 105, 296, 307, 682, 781
CviKI_1	RGCY	7 cut(s)	30, 79, 105, 296, 307, 682, 781
CviQI	GTAC	1 cut(s)	150
DdeI	CTNAG	2 cut(s)	224, 279
DpnI	GATC	4 cut(s)	123, 401, 511, 693
DpnII	GATC	4 cut(s)	121, 399, 509, 691
Eam1104I	CTCTTC	1 cut(s)	680
EarI	CTCTTC	1 cut(s)	680
Eco32I	GATATC	1 cut(s)	373
Eco47I	GGWCC	2 cut(s)	751, 757
Eco57I	CTGAAG	1 cut(s)	704
Eco88I	CYCGRG	1 cut(s)	302
EcoRII	CCWGG	1 cut(s)	61
EcoRV	GATATC	1 cut(s)	373
FaeI	CATG	8 cut(s)	119, 143, 211, 419, 452, 585, 662, 739
FaqI	GGGAC	6 cut(s)	284, 687, 764, 770, 776, 782
FatI	CATG	8 cut(s)	115, 139, 207, 415, 448, 581, 658, 735
FauNDI	CATATG	1 cut(s)	86
FblI	GTMKAC	1 cut(s)	360
Fnu4HI	GCNGC	3 cut(s)	77, 106, 308
FokI	GGATG	1 cut(s)	320
Fsp4HI	GCNGC	3 cut(s)	77, 106, 308
FspBI	CTAG	3 cut(s)	470, 507, 633
FspI	TGCGCA	1 cut(s)	447
GlaI	GCGC	3 cut(s)	212, 447, 646
GluI	GCNGC	3 cut(s)	77, 106, 308
HapII	CCGG	2 cut(s)	754, 760
HgaI	GACGC	1 cut(s)	779
HhaI	GCGC	3 cut(s)	213, 448, 647
Hin1II	CATG	8 cut(s)	119, 143, 211, 419, 452, 585, 662, 739
Hin6I	GCGC	3 cut(s)	211, 446, 645
HinP1I	GCGC	3 cut(s)	211, 446, 645
HincII	GTYRAC	1 cut(s)	361
HindII	GTYRAC	1 cut(s)	361
HinfI	GANTC	2 cut(s)	259, 574
HpaII	CCGG	2 cut(s)	754, 760
HphI	GGTGA	2 cut(s)	246, 641
Hpy166II	GTNNAC	2 cut(s)	361, 638
Hpy188I	TCNGA	2 cut(s)	7, 569
Hpy188III	TCNNGA	4 cut(s)	185, 263, 368, 507
Hpy8I	GTNNAC	2 cut(s)	361, 638
HpyAV	CCTTC	1 cut(s)	515
HpyCH4III	ACNGT	3 cut(s)	252, 319, 460
HpyCH4V	TGCA	6 cut(s)	128, 331, 389, 503, 669, 731
HpyF10VI	GCNNNNNNNGC	1 cut(s)	293
HpyF3I	CTNAG	2 cut(s)	224, 279
Hsp92II	CATG	8 cut(s)	119, 143, 211, 419, 452, 585, 662, 739
HspAI	GCGC	3 cut(s)	211, 446, 645
Kzo9I	GATC	4 cut(s)	121, 399, 509, 691
LmnI	GCTCC	1 cut(s)	27
Lsp1109I	GCAGC	2 cut(s)	88, 294
LweI	GCATC	1 cut(s)	512
MaeI	CTAG	3 cut(s)	470, 507, 633
MaeIII	GTNAC	5 cut(s)	178, 216, 252, 433, 483
MalI	GATC	4 cut(s)	123, 401, 511, 693
MboI	GATC	4 cut(s)	121, 399, 509, 691
MboII	GAAGA	5 cut(s)	257, 541, 566, 569, 697
MflI	RGATCY	1 cut(s)	509
MluCI	AATT	1 cut(s)	409
MlyI	GAGTC	1 cut(s)	568
MmeI	TCCRAC	1 cut(s)	602
MnlI	CCTC	5 cut(s)	6, 161, 259, 523, 736
MseI	TTAA	3 cut(s)	81, 194, 408
MslI	CAYNNNNRTG	1 cut(s)	657
MspI	CCGG	2 cut(s)	754, 760
MspR9I	CCNGG	3 cut(s)	63, 755, 761
Mva1269I	GAATGC	1 cut(s)	726
MvaI	CCWGG	1 cut(s)	63
MvnI	CGCG	1 cut(s)	339
MwoI	GCNNNNNNNGC	1 cut(s)	293
NciI	CCSGG	2 cut(s)	755, 761
NdeI	CATATG	1 cut(s)	86
NdeII	GATC	4 cut(s)	121, 399, 509, 691
NlaIII	CATG	8 cut(s)	119, 143, 211, 419, 452, 585, 662, 739
NlaIV	GGNNCC	3 cut(s)	29, 752, 758
NmuCI	GTSAC	4 cut(s)	178, 252, 433, 483
NsbI	TGCGCA	1 cut(s)	447
NspI	RCATGY	4 cut(s)	211, 419, 452, 585
PaeI	GCATGC	1 cut(s)	452
PaqCI	CACCTGC	1 cut(s)	736
PciI	ACATGT	1 cut(s)	581
PctI	GAATGC	1 cut(s)	726
PfeI	GAWTC	1 cut(s)	259
PkrI	GCNGC	3 cut(s)	78, 107, 309
PleI	GAGTC	1 cut(s)	568
PpsI	GAGTC	1 cut(s)	568
PscI	ACATGT	1 cut(s)	581
Psp6I	CCWGG	1 cut(s)	61
PspGI	CCWGG	1 cut(s)	61
PspN4I	GGNNCC	3 cut(s)	29, 752, 758
PspPI	GGNCC	2 cut(s)	751, 757
PstNI	CAGNNNCTG	1 cut(s)	682
PsuI	RGATCY	1 cut(s)	509
RsaI	GTAC	1 cut(s)	151
RsaNI	GTAC	1 cut(s)	150
RseI	CAYNNNNRTG	1 cut(s)	657
SalI	GTCGAC	1 cut(s)	359
SaqAI	TTAA	3 cut(s)	81, 194, 408
SatI	GCNGC	3 cut(s)	77, 106, 308
Sau3AI	GATC	4 cut(s)	121, 399, 509, 691
Sau96I	GGNCC	2 cut(s)	751, 757
SchI	GAGTC	1 cut(s)	568
ScrFI	CCNGG	3 cut(s)	63, 755, 761
SetI	ASST	7 cut(s)	81, 155, 235, 309, 355, 526, 730
SfaNI	GCATC	1 cut(s)	512
SfcI	CTRYAG	1 cut(s)	94
SinI	GGWCC	2 cut(s)	751, 757
SmiMI	CAYNNNNRTG	1 cut(s)	657
SmlI	CTYRAG	2 cut(s)	263, 288
SmoI	CTYRAG	2 cut(s)	263, 288
SpeI	ACTAGT	1 cut(s)	632
SphI	GCATGC	1 cut(s)	452
Sse9I	AATT	1 cut(s)	409
SsiI	CCGC	2 cut(s)	106, 337
SspMI	CTAG	3 cut(s)	470, 507, 633
StyD4I	CCNGG	3 cut(s)	61, 753, 759
TaaI	ACNGT	3 cut(s)	252, 319, 460
TaqI	TCGA	2 cut(s)	360, 515
TasI	AATT	1 cut(s)	409
TauI	GCSGC	1 cut(s)	108
TfiI	GAWTC	1 cut(s)	259
Tru1I	TTAA	3 cut(s)	81, 194, 408
Tru9I	TTAA	3 cut(s)	81, 194, 408
TscAI	CASTG	1 cut(s)	683
TseFI	GTSAC	4 cut(s)	178, 252, 433, 483
TseI	GCWGC	2 cut(s)	76, 307
Tsp45I	GTSAC	4 cut(s)	178, 252, 433, 483
TspDTI	ATGAA	2 cut(s)	159, 636
TspRI	CASTG	1 cut(s)	683
VpaK11BI	GGWCC	2 cut(s)	751, 757
XbaI	TCTAGA	1 cut(s)	506
XceI	RCATGY	4 cut(s)	211, 419, 452, 585
XmiI	GTMKAC	1 cut(s)	360
XspI	CTAG	3 cut(s)	470, 507, 633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.