Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0005547

Physical Location & Seq

Genomic Coordinates Forward (+)

695958 .. 696392

Gene Structure 435 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG011400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGGATTGAGGATCTTTGCAAGCTTAAGCATCGCGACGATGGAGCTGATTACGATATTGTTGATGAGCTCTATCGTCAAAACAAGTACCAAGTCAGCTATGGCTAGGTTGATTCGGCCGAGTTGGGAAGATAAGTCCAAGATGACATGTTACTTGGTAGTTCCCTTGATCAGTGGTTACAAGAATAACAGAGGAGCTCGATCTGCCATGTGCTATGAAGATCACTTTGATGTTGAGCTATACTTCCATTTTGTTTTTCTTTGTTTACTGGAGTTCCACTTGGTTATATTGGCTGTAGTGTTGGTTTTGATTCTTTTGGGGGCTTCTGCAGAGGCCGAAGAACAGGGTACTGCAGTACAAGTTCATATTGATAACGGTTGTACACTAATTATTGAGTTGAGAATAATATTTGATTCAGAATGGGAATGTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

144

Amino Acids

16.22

Weight (kDa)

5.29

Isoelectric Point (pI)

45.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Publication-ready

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Orthologous Genes (Group: OG0005547)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g32184 FvH4_7g32210
rosa_chinensis	RchiOBHm_Chr3g0448411
rosa_multiflora	Rmu_sc0003308.1_g000008 Rmu_sc0008418.1_g000004 Rmu_sc0008418.1_g000005 Rmu_sc0010238.1_g000009 Rmu_sc0010238.1_g000010
rosa_roxburghii	Rroxscaffold_4G00278410 Rroxscaffold_4G00278420 Rroxscaffold_6G00426600
rosa_rugosa	Rorug02G0612200
rosa_samantha	Rh1AG454600 Rh1AG454700 Rh1BG411900 Rh1BG412000 Rh1CG426500 Rh1DG444100 Rh1DG444200 Rh3AG011500 Rh3AG011600 Rh3BG011300 Rh3BG011400 Rh3CG011000 Rh3CG011100 Rh3DG011700 Rh3DG011800
rosa_wichuraiana	Rw0G013340 Rw0G013350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	35
AclWI	GGATC	1 cut(s)	20
AcoI	YGGCCR	1 cut(s)	116
AfaI	GTAC	4 cut(s)	88, 349, 357, 382
AflII	CTTAAG	1 cut(s)	25
AflIII	ACRYGT	1 cut(s)	146
AluBI	AGCT	6 cut(s)	24, 46, 69, 98, 197, 238
AluI	AGCT	6 cut(s)	24, 46, 69, 98, 197, 238
Alw21I	GWGCWC	2 cut(s)	71, 199
AlwI	GGATC	1 cut(s)	20
AoxI	GGCC	2 cut(s)	116, 333
BaeI	ACNNNNGTAYC	2 cut(s)	339, 372
BanII	GRGCYC	2 cut(s)	71, 199
Bbv12I	GWGCWC	2 cut(s)	71, 199
BccI	CCATC	1 cut(s)	34
BclI	TGATCA	1 cut(s)	168
BfaI	CTAG	1 cut(s)	105
BfmI	CTRYAG	3 cut(s)	294, 327, 351
BfrI	CTTAAG	1 cut(s)	25
BmsI	GCATC	1 cut(s)	39
BpmI	CTGGAG	1 cut(s)	290
Bse1I	ACTGG	1 cut(s)	273
BseNI	ACTGG	1 cut(s)	273
BseRI	GAGGAG	1 cut(s)	207
BseX3I	CGGCCG	1 cut(s)	116
Bsh1236I	CGCG	1 cut(s)	35
Bsh1285I	CGRYCG	1 cut(s)	119
BshFI	GGCC	2 cut(s)	118, 335
BsiEI	CGRYCG	1 cut(s)	119
BsiHKAI	GWGCWC	2 cut(s)	71, 199
BsnI	GGCC	2 cut(s)	118, 335
Bsp1286I	GDGCHC	2 cut(s)	71, 199
Bsp1407I	TGTACA	1 cut(s)	380
Bsp143I	GATC	4 cut(s)	12, 168, 200, 220
Bsp68I	TCGCGA	1 cut(s)	35
BspANI	GGCC	2 cut(s)	118, 335
BspFNI	CGCG	1 cut(s)	35
BspMAI	CTGCAG	2 cut(s)	331, 355
BspPI	GGATC	1 cut(s)	20
BspTI	CTTAAG	1 cut(s)	25
BsrGI	TGTACA	1 cut(s)	380
BsrI	ACTGG	1 cut(s)	273
BssMI	GATC	4 cut(s)	12, 168, 200, 220
Bst4CI	ACNGT	1 cut(s)	377
BstAFI	CTTAAG	1 cut(s)	25
BstAUI	TGTACA	1 cut(s)	380
BstC8I	GCNNGC	1 cut(s)	22
BstFNI	CGCG	1 cut(s)	35
BstKTI	GATC	4 cut(s)	15, 171, 203, 223
BstMBI	GATC	4 cut(s)	12, 168, 200, 220
BstMCI	CGRYCG	1 cut(s)	119
BstMWI	GCNNNNNNNGC	1 cut(s)	203
BstNSI	RCATGY	1 cut(s)	150
BstSFI	CTRYAG	3 cut(s)	294, 327, 351
BstUI	CGCG	1 cut(s)	35
BstX2I	RGATCY	1 cut(s)	12
BstYI	RGATCY	1 cut(s)	12
BstZI	CGGCCG	1 cut(s)	116
BsuRI	GGCC	2 cut(s)	118, 335
BtgZI	GCGATG	1 cut(s)	16
BtsIMutI	CAGTG	1 cut(s)	178
BtuMI	TCGCGA	1 cut(s)	35
Cac8I	GCNNGC	1 cut(s)	22
Csp6I	GTAC	4 cut(s)	87, 348, 356, 381
CviAII	CATG	2 cut(s)	147, 208
CviQI	GTAC	4 cut(s)	87, 348, 356, 381
DpnI	GATC	4 cut(s)	14, 170, 202, 222
DpnII	GATC	4 cut(s)	12, 168, 200, 220
EaeI	YGGCCR	1 cut(s)	116
EagI	CGGCCG	1 cut(s)	116
Ecl136II	GAGCTC	2 cut(s)	69, 197
EclXI	CGGCCG	1 cut(s)	116
Eco24I	GRGCYC	2 cut(s)	71, 199
Eco52I	CGGCCG	1 cut(s)	116
Eco53kI	GAGCTC	2 cut(s)	69, 197
EcoICRI	GAGCTC	2 cut(s)	69, 197
EcoT38I	GRGCYC	2 cut(s)	71, 199
FaeI	CATG	2 cut(s)	150, 211
FaiI	YATR	9 cut(s)	101, 148, 209, 216, 241, 287, 366, 431, 433
FatI	CATG	2 cut(s)	146, 207
FbaI	TGATCA	1 cut(s)	168
FriOI	GRGCYC	2 cut(s)	71, 199
FspBI	CTAG	1 cut(s)	105
GsuI	CTGGAG	1 cut(s)	290
HaeIII	GGCC	2 cut(s)	118, 335
Hin1II	CATG	2 cut(s)	150, 211
HindIII	AAGCTT	1 cut(s)	22
HinfI	GANTC	3 cut(s)	112, 310, 413
Hpy166II	GTNNAC	2 cut(s)	266, 383
Hpy188I	TCNGA	1 cut(s)	418
Hpy188III	TCNNGA	1 cut(s)	34
Hpy8I	GTNNAC	2 cut(s)	266, 383
Hpy99I	CGWCG	1 cut(s)	40
HpyCH4III	ACNGT	1 cut(s)	377
HpyCH4V	TGCA	3 cut(s)	20, 329, 353
HpyF10VI	GCNNNNNNNGC	1 cut(s)	203
Hsp92II	CATG	2 cut(s)	150, 211
Ksp22I	TGATCA	1 cut(s)	168
Kzo9I	GATC	4 cut(s)	12, 168, 200, 220
LmnI	GCTCC	2 cut(s)	43, 194
LpnPI	CCDG	2 cut(s)	254, 329
LweI	GCATC	1 cut(s)	39
MaeI	CTAG	1 cut(s)	105
MaeIII	GTNAC	2 cut(s)	149, 176
MalI	GATC	4 cut(s)	14, 170, 202, 222
MboI	GATC	4 cut(s)	12, 168, 200, 220
MboII	GAAGA	3 cut(s)	140, 230, 350
MflI	RGATCY	1 cut(s)	12
MhlI	GDGCHC	2 cut(s)	71, 199
MluCI	AATT	1 cut(s)	387
MnlI	CCTC	3 cut(s)	3, 185, 325
MseI	TTAA	1 cut(s)	26
MslI	CAYNNNNRTG	1 cut(s)	228
MspCI	CTTAAG	1 cut(s)	25
MvnI	CGCG	1 cut(s)	35
MwoI	GCNNNNNNNGC	1 cut(s)	203
NdeII	GATC	4 cut(s)	12, 168, 200, 220
NlaIII	CATG	2 cut(s)	150, 211
NmeAIII	GCCGAG	1 cut(s)	144
NruI	TCGCGA	1 cut(s)	35
NspI	RCATGY	1 cut(s)	150
PciI	ACATGT	1 cut(s)	146
PfeI	GAWTC	3 cut(s)	112, 310, 413
PscI	ACATGT	1 cut(s)	146
Psp124BI	GAGCTC	2 cut(s)	71, 199
PstI	CTGCAG	2 cut(s)	331, 355
PsuI	RGATCY	1 cut(s)	12
RruI	TCGCGA	1 cut(s)	35
RsaI	GTAC	4 cut(s)	88, 349, 357, 382
RsaNI	GTAC	4 cut(s)	87, 348, 356, 381
RseI	CAYNNNNRTG	1 cut(s)	228
SacI	GAGCTC	2 cut(s)	71, 199
SaqAI	TTAA	1 cut(s)	26
Sau3AI	GATC	4 cut(s)	12, 168, 200, 220
SduI	GDGCHC	2 cut(s)	71, 199
SetI	ASST	7 cut(s)	26, 48, 71, 100, 110, 199, 240
SfaNI	GCATC	1 cut(s)	39
SfcI	CTRYAG	3 cut(s)	294, 327, 351
SmiMI	CAYNNNNRTG	1 cut(s)	228
SmlI	CTYRAG	1 cut(s)	25
SmoI	CTYRAG	1 cut(s)	25
Sse9I	AATT	1 cut(s)	387
SspI	AATATT	1 cut(s)	408
SspMI	CTAG	1 cut(s)	105
SstI	GAGCTC	2 cut(s)	71, 199
TaaI	ACNGT	1 cut(s)	377
TaqI	TCGA	1 cut(s)	199
TasI	AATT	1 cut(s)	387
TatI	WGTACW	2 cut(s)	355, 380
TfiI	GAWTC	3 cut(s)	112, 310, 413
Tru1I	TTAA	1 cut(s)	26
Tru9I	TTAA	1 cut(s)	26
TscAI	CASTG	1 cut(s)	178
TspDTI	ATGAA	2 cut(s)	231, 353
TspRI	CASTG	1 cut(s)	178
Vha464I	CTTAAG	1 cut(s)	25
XceI	RCATGY	1 cut(s)	150
XcmI	CCANNNNNNNNNTGG	1 cut(s)	97
XspI	CTAG	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.