Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0005547

Physical Location & Seq

Genomic Coordinates Forward (+)

47283214 .. 47284041

Gene Structure 828 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00426600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGCTAAGGACGCTGATTGTAACAATGCGAATGGCTTCCTTGTTGAACTCGAGGGCATCCTCAGCCTCCTCATGCTCATCATTTTCACTGTTTTTGCTGCTCTCATGATTATCCTCTTCACACGACCCTACATTGCTAATTCTGACATTACTCATGCTTCGCTTGCCGAGTTCAACTTCAGTACCCCGACCACCACCAGCAATTTCAGTGTCACTATTCTTCACTACAAGCTTAATCTCAACATCGCAGTAGGAAACCCAAACGAAAACTACGGCATCTACCACGACAAAGTTCAAATGCTGGCTTATTATAAGAAGCAGAGGTTTGGCATGGCGAATTTGAGCTCTTTTTACCAAGGGAAGAGGAACATAACTGAAATGACACTGCCGTTGAAAGGACAACAAGTGATGATTTTTGATGGGATTGAGGATCTTTGCAAGCTTAAGCACCGCGACGATGGAGCTAATTACGATATTGTTGTTGAGCTCTATCGTCAAAACAAGTACCAAGCCACTGCGTCAGCTATGGCTAGGTTGATTCGGCCGGGTTGGGAAGATAAGTCCAAGATGACATGTTACTTGGAAGTTCCTTTGATCAGTGGTTACAAGAATAACAGAGGAGCTCAATCTGCCATGTGCTATGATGATCACTTTGATGATGAGCTATACTTCCCTTTTGTTTTTCTTTGTTTACTGGAGTTCCACTTGGTTATATTGGCTGTAGTGTTGGTTTTAATTCTTTTGCGGGCTTCTGCAGAGGCCGAAGAGCAGACTACTGCAGTACAAGTTCATATTGATAACGGTTGTACGCTAATTGTTGAGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0007275 GO:0007568 GO:0008150 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009615 GO:0010150 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0055044 GO:0071944 GO:0090693 GO:0098542 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

275

Amino Acids

31.16

Weight (kDa)

5.36

Isoelectric Point (pI)

35.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_2	PF03168	82 - 163	8e-06	Late embryogenesis abundant protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005547)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g32184 FvH4_7g32210
rosa_chinensis	RchiOBHm_Chr3g0448411
rosa_multiflora	Rmu_sc0003308.1_g000008 Rmu_sc0008418.1_g000004 Rmu_sc0008418.1_g000005 Rmu_sc0010238.1_g000009 Rmu_sc0010238.1_g000010
rosa_roxburghii	Rroxscaffold_4G00278410 Rroxscaffold_4G00278420 Rroxscaffold_6G00426600
rosa_rugosa	Rorug02G0612200
rosa_samantha	Rh1AG454600 Rh1AG454700 Rh1BG411900 Rh1BG412000 Rh1CG426500 Rh1DG444100 Rh1DG444200 Rh3AG011500 Rh3AG011600 Rh3BG011300 Rh3BG011400 Rh3CG011000 Rh3CG011100 Rh3DG011700 Rh3DG011800
rosa_wichuraiana	Rw0G013340 Rw0G013350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	312
AccII	CGCG	1 cut(s)	453
AciI	CCGC	2 cut(s)	451, 745
AclWI	GGATC	1 cut(s)	438
AcoI	YGGCCR	1 cut(s)	542
AcsI	RAATTY	1 cut(s)	337
AcuI	CTGAAG	1 cut(s)	163
AfaI	GTAC	4 cut(s)	184, 506, 783, 808
AfiI	CCNNNNNNNGG	1 cut(s)	395
AflII	CTTAAG	1 cut(s)	443
AflIII	ACRYGT	1 cut(s)	572
AgsI	TTSAA	4 cut(s)	47, 175, 296, 394
AluBI	AGCT	8 cut(s)	232, 345, 442, 464, 487, 524, 623, 664
AluI	AGCT	8 cut(s)	232, 345, 442, 464, 487, 524, 623, 664
Alw21I	GWGCWC	3 cut(s)	347, 489, 625
AlwI	GGATC	1 cut(s)	438
Ama87I	CYCGRG	1 cut(s)	50
AoxI	GGCC	2 cut(s)	542, 759
ApeKI	GCWGC	1 cut(s)	98
ApoI	RAATTY	1 cut(s)	337
Asp700I	GAANNNNTTC	1 cut(s)	35
AsuC2I	CCSGG	1 cut(s)	546
AvaI	CYCGRG	1 cut(s)	50
BaeI	ACNNNNGTAYC	2 cut(s)	166, 199
BanII	GRGCYC	3 cut(s)	347, 489, 625
Bbv12I	GWGCWC	3 cut(s)	347, 489, 625
BbvCI	CCTCAGC	1 cut(s)	62
BbvI	GCAGC	1 cut(s)	85
BccI	CCATC	2 cut(s)	413, 452
BceAI	ACGGC	2 cut(s)	289, 373
BclI	TGATCA	2 cut(s)	594, 646
BcnI	CCSGG	1 cut(s)	546
BfaI	CTAG	1 cut(s)	531
BfmI	CTRYAG	3 cut(s)	720, 753, 777
BfrI	CTTAAG	1 cut(s)	443
BisI	GCNGC	1 cut(s)	99
BlsI	GCNGC	1 cut(s)	100
Bme1390I	CCNGG	1 cut(s)	546
BmeT110I	CYCGRG	1 cut(s)	50
BmrFI	CCNGG	1 cut(s)	546
BmsI	GCATC	2 cut(s)	66, 285
BpmI	CTGGAG	1 cut(s)	716
Bpu10I	CCTNAGC	2 cut(s)	6, 62
BpuMI	CCSGG	1 cut(s)	546
BsaJI	CCNNGG	1 cut(s)	355
Bsc4I	CCNNNNNNNGG	1 cut(s)	395
Bse1I	ACTGG	1 cut(s)	699
Bse3DI	GCAATG	1 cut(s)	132
BseDI	CCNNGG	1 cut(s)	355
BseGI	GGATG	1 cut(s)	57
BseLI	CCNNNNNNNGG	1 cut(s)	395
BseMI	GCAATG	1 cut(s)	132
BseMII	CTCAG	1 cut(s)	76
BseNI	ACTGG	1 cut(s)	699
BseRI	GAGGAG	2 cut(s)	59, 633
BseX3I	CGGCCG	1 cut(s)	542
BseXI	GCAGC	1 cut(s)	85
Bsh1236I	CGCG	1 cut(s)	453
Bsh1285I	CGRYCG	1 cut(s)	545
BshFI	GGCC	2 cut(s)	544, 761
BsiEI	CGRYCG	1 cut(s)	545
BsiHKAI	GWGCWC	3 cut(s)	347, 489, 625
BsiHKCI	CYCGRG	1 cut(s)	50
BsiSI	CCGG	1 cut(s)	545
BslI	CCNNNNNNNGG	1 cut(s)	395
BsnI	GGCC	2 cut(s)	544, 761
BsoBI	CYCGRG	1 cut(s)	50
Bsp1286I	GDGCHC	3 cut(s)	347, 489, 625
Bsp143I	GATC	3 cut(s)	430, 594, 646
BspACI	CCGC	2 cut(s)	451, 745
BspANI	GGCC	2 cut(s)	544, 761
BspCNI	CTCAG	1 cut(s)	75
BspFNI	CGCG	1 cut(s)	453
BspHI	TCATGA	1 cut(s)	105
BspMAI	CTGCAG	2 cut(s)	757, 781
BspPI	GGATC	1 cut(s)	438
BspQI	GCTCTTC	1 cut(s)	759
BspTI	CTTAAG	1 cut(s)	443
BsrDI	GCAATG	1 cut(s)	132
BsrI	ACTGG	1 cut(s)	699
BssECI	CCNNGG	1 cut(s)	355
BssMI	GATC	3 cut(s)	430, 594, 646
BssT1I	CCWWGG	1 cut(s)	355
Bst4CI	ACNGT	2 cut(s)	91, 803
Bst6I	CTCTTC	3 cut(s)	122, 356, 759
BstAFI	CTTAAG	1 cut(s)	443
BstC8I	GCNNGC	4 cut(s)	165, 303, 440, 747
BstDEI	CTNAG	2 cut(s)	6, 62
BstF5I	GGATG	1 cut(s)	57
BstFNI	CGCG	1 cut(s)	453
BstKTI	GATC	3 cut(s)	433, 597, 649
BstMBI	GATC	3 cut(s)	430, 594, 646
BstMCI	CGRYCG	1 cut(s)	545
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 63, 164, 629
BstNSI	RCATGY	1 cut(s)	576
BstSCI	CCNGG	1 cut(s)	544
BstSFI	CTRYAG	3 cut(s)	720, 753, 777
BstUI	CGCG	1 cut(s)	453
BstV1I	GCAGC	1 cut(s)	85
BstX2I	RGATCY	1 cut(s)	430
BstYI	RGATCY	1 cut(s)	430
BstZI	CGGCCG	1 cut(s)	542
BsuRI	GGCC	2 cut(s)	544, 761
BtgZI	GCGATG	1 cut(s)	229
BtsCI	GGATG	1 cut(s)	57
BtsI	GCAGTG	2 cut(s)	383, 513
BtsIMutI	CAGTG	5 cut(s)	87, 214, 383, 513, 604
Cac8I	GCNNGC	4 cut(s)	165, 303, 440, 747
CciI	TCATGA	1 cut(s)	105
CseI	GACGC	2 cut(s)	20, 507
Csp6I	GTAC	4 cut(s)	183, 505, 782, 807
CviAII	CATG	6 cut(s)	73, 106, 155, 331, 573, 634
CviQI	GTAC	4 cut(s)	183, 505, 782, 807
DdeI	CTNAG	2 cut(s)	6, 62
DpnI	GATC	3 cut(s)	432, 596, 648
DpnII	GATC	3 cut(s)	430, 594, 646
EaeI	YGGCCR	1 cut(s)	542
EagI	CGGCCG	1 cut(s)	542
Eam1104I	CTCTTC	3 cut(s)	122, 356, 759
EarI	CTCTTC	3 cut(s)	122, 356, 759
Ecl136II	GAGCTC	3 cut(s)	345, 487, 623
EclXI	CGGCCG	1 cut(s)	542
Eco130I	CCWWGG	1 cut(s)	355
Eco24I	GRGCYC	3 cut(s)	347, 489, 625
Eco52I	CGGCCG	1 cut(s)	542
Eco53kI	GAGCTC	3 cut(s)	345, 487, 623
Eco57I	CTGAAG	1 cut(s)	163
Eco88I	CYCGRG	1 cut(s)	50
EcoICRI	GAGCTC	3 cut(s)	345, 487, 623
EcoT14I	CCWWGG	1 cut(s)	355
EcoT38I	GRGCYC	3 cut(s)	347, 489, 625
ErhI	CCWWGG	1 cut(s)	355
FaeI	CATG	6 cut(s)	76, 109, 158, 334, 576, 637
FatI	CATG	6 cut(s)	72, 105, 154, 330, 572, 633
FauI	CCCGC	1 cut(s)	738
FbaI	TGATCA	2 cut(s)	594, 646
Fnu4HI	GCNGC	1 cut(s)	99
FokI	GGATG	1 cut(s)	44
FriOI	GRGCYC	3 cut(s)	347, 489, 625
Fsp4HI	GCNGC	1 cut(s)	99
FspBI	CTAG	1 cut(s)	531
GluI	GCNGC	1 cut(s)	99
GsuI	CTGGAG	1 cut(s)	716
HaeIII	GGCC	2 cut(s)	544, 761
HapII	CCGG	1 cut(s)	545
HgaI	GACGC	2 cut(s)	20, 507
Hin1II	CATG	6 cut(s)	76, 109, 158, 334, 576, 637
HindIII	AAGCTT	2 cut(s)	230, 440
HinfI	GANTC	1 cut(s)	538
HpaII	CCGG	1 cut(s)	545
Hpy166II	GTNNAC	1 cut(s)	692
Hpy188I	TCNGA	1 cut(s)	145
Hpy188III	TCNNGA	1 cut(s)	106
Hpy8I	GTNNAC	1 cut(s)	692
Hpy99I	CGWCG	1 cut(s)	458
HpyCH4III	ACNGT	2 cut(s)	91, 803
HpyCH4V	TGCA	3 cut(s)	438, 755, 779
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 63, 164, 629
HpyF3I	CTNAG	2 cut(s)	6, 62
Hsp92II	CATG	6 cut(s)	76, 109, 158, 334, 576, 637
Ksp22I	TGATCA	2 cut(s)	594, 646
Kzo9I	GATC	3 cut(s)	430, 594, 646
LguI	GCTCTTC	1 cut(s)	759
LmnI	GCTCC	2 cut(s)	461, 620
LpnPI	CCDG	4 cut(s)	211, 287, 558, 680
Lsp1109I	GCAGC	1 cut(s)	85
LweI	GCATC	2 cut(s)	66, 285
MaeI	CTAG	1 cut(s)	531
MaeIII	GTNAC	4 cut(s)	20, 211, 575, 602
MalI	GATC	3 cut(s)	432, 596, 648
MboI	GATC	3 cut(s)	430, 594, 646
MboII	GAAGA	5 cut(s)	109, 212, 373, 566, 776
MflI	RGATCY	1 cut(s)	430
MhlI	GDGCHC	3 cut(s)	347, 489, 625
MluCI	AATT	6 cut(s)	139, 202, 337, 466, 735, 813
MroXI	GAANNNNTTC	1 cut(s)	35
MseI	TTAA	3 cut(s)	234, 444, 734
MslI	CAYNNNNRTG	1 cut(s)	654
MspCI	CTTAAG	1 cut(s)	443
MspI	CCGG	1 cut(s)	545
MspR9I	CCNGG	1 cut(s)	546
MvnI	CGCG	1 cut(s)	453
MwoI	GCNNNNNNNGC	4 cut(s)	11, 63, 164, 629
NciI	CCSGG	1 cut(s)	546
NdeII	GATC	3 cut(s)	430, 594, 646
NlaIII	CATG	6 cut(s)	76, 109, 158, 334, 576, 637
NmeAIII	GCCGAG	1 cut(s)	193
NmuCI	GTSAC	1 cut(s)	211
NspI	RCATGY	1 cut(s)	576
PaeR7I	CTCGAG	1 cut(s)	50
PagI	TCATGA	1 cut(s)	105
PciI	ACATGT	1 cut(s)	572
PciSI	GCTCTTC	1 cut(s)	759
PdmI	GAANNNNTTC	1 cut(s)	35
PfeI	GAWTC	1 cut(s)	538
PkrI	GCNGC	1 cut(s)	100
PscI	ACATGT	1 cut(s)	572
PsiI	TTATAA	1 cut(s)	312
Psp124BI	GAGCTC	3 cut(s)	347, 489, 625
PspXI	VCTCGAGB	1 cut(s)	50
PstI	CTGCAG	2 cut(s)	757, 781
PsuI	RGATCY	1 cut(s)	430
RsaI	GTAC	4 cut(s)	184, 506, 783, 808
RsaNI	GTAC	4 cut(s)	183, 505, 782, 807
RseI	CAYNNNNRTG	1 cut(s)	654
SacI	GAGCTC	3 cut(s)	347, 489, 625
SapI	GCTCTTC	1 cut(s)	759
SaqAI	TTAA	3 cut(s)	234, 444, 734
SatI	GCNGC	1 cut(s)	99
Sau3AI	GATC	3 cut(s)	430, 594, 646
ScrFI	CCNGG	1 cut(s)	546
SduI	GDGCHC	3 cut(s)	347, 489, 625
SfaNI	GCATC	2 cut(s)	66, 285
SfcI	CTRYAG	3 cut(s)	720, 753, 777
Sfr274I	CTCGAG	1 cut(s)	50
SlaI	CTCGAG	1 cut(s)	50
SmiMI	CAYNNNNRTG	1 cut(s)	654
SmlI	CTYRAG	2 cut(s)	50, 443
SmoI	CTYRAG	2 cut(s)	50, 443
Sse9I	AATT	6 cut(s)	139, 202, 337, 466, 735, 813
SsiI	CCGC	2 cut(s)	451, 745
SspMI	CTAG	1 cut(s)	531
SstI	GAGCTC	3 cut(s)	347, 489, 625
StyD4I	CCNGG	1 cut(s)	544
StyI	CCWWGG	1 cut(s)	355
TaaI	ACNGT	2 cut(s)	91, 803
TaqI	TCGA	1 cut(s)	51
TasI	AATT	6 cut(s)	139, 202, 337, 466, 735, 813
TatI	WGTACW	1 cut(s)	781
TfiI	GAWTC	1 cut(s)	538
Tru1I	TTAA	3 cut(s)	234, 444, 734
Tru9I	TTAA	3 cut(s)	234, 444, 734
TscAI	CASTG	5 cut(s)	94, 214, 390, 520, 604
TseFI	GTSAC	1 cut(s)	211
TseI	GCWGC	1 cut(s)	98
Tsp45I	GTSAC	1 cut(s)	211
TspDTI	ATGAA	1 cut(s)	779
TspRI	CASTG	5 cut(s)	94, 214, 390, 520, 604
Vha464I	CTTAAG	1 cut(s)	443
XapI	RAATTY	1 cut(s)	337
XceI	RCATGY	1 cut(s)	576
XhoI	CTCGAG	1 cut(s)	50
XmnI	GAANNNNTTC	1 cut(s)	35
XspI	CTAG	1 cut(s)	531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.