RchiOBHm_Chr3g0448411

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0005547
Physical Location & Seq
Forward (+)
662504 .. 663331
828 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41585

Sequence Viewer

Length: 828 bp
ATGGCTAAGGACGCCGACTGTAACAATGCGAATGGCTTCCTTCTTGAACTCGAGGGCATCCTCAGCCTCCTCACGCTCATCGTTCTCTGTGTTTTTGCTGCTCTCATGATTATCCTCTTCACACGACCCTACATTGCTAATTCTGACATTACTCATGCTTCGCTTGCCGAGTTCAACTTCAGTACCCCGACCGCCACCAACAATTTCAGTGCCAATATTCTTCACTACAAGCTTAATCTCAACATCGCAGTCGGAAACCCAAACGAAAACTACGGCATCTACCACGACAAAGTTCAAATGCTGGCTTATTATAAGAAGCAGAGGTTTGGCATGGCGAATTTGAGCTCTTTTTACCAAGGGAAGAGGAACATAACTGAAATGACACTGCCGTTGAAAGGACAACAAGTGATGATTTTTGATGGGATTGAGGATCTTTGCAAGCTTAAGCATCGCGACGATGGAGCTGATTACGATATTGTTGATGAGCTCTATCGTCAAAACAAGTACCAAGCCACTGCGTCAGCTATGGCTAGGTTGATTCGGCCGAGTTGGGAAGATAAGTCCAAGATGACATGTTACTTGGTAGTTCCCTTGATCAGTGGTTACAAGAATAACAGAGGAGCTCGATCTGCCATGTGCTATGAAGATCACTTTGATGTTGAGCTATACTTCCATTTTGTTTTTCTTTGTTTACTGGAGTTCCACTTGGTTATATTGGCTGTAGTGTTGGTTTTGATTCTTTTGGGGGCTTCTGCAGAGGCCGAAGAGCAGGGTACTGCAGTACAAGTTCATATTGATAACGGTCGTACACTAATTATTGAGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

275

Amino Acids

31.08

Weight (kDa)

5.6

Isoelectric Point (pI)

33.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 312
AccII CGCG 1 cut(s) 453
AciI CCGC 1 cut(s) 192
AclWI GGATC 1 cut(s) 438
AcoI YGGCCR 1 cut(s) 542
AcsI RAATTY 1 cut(s) 337
AcuI CTGAAG 1 cut(s) 163
AcyI GRCGYC 1 cut(s) 12
AfaI GTAC 5 cut(s) 184, 506, 775, 783, 808
AfiI CCNNNNNNNGG 1 cut(s) 395
AflII CTTAAG 1 cut(s) 443
AflIII ACRYGT 1 cut(s) 572
AgsI TTSAA 4 cut(s) 47, 175, 296, 394
AluBI AGCT 8 cut(s) 232, 345, 442, 464, 487, 524, 623, 664
AluI AGCT 8 cut(s) 232, 345, 442, 464, 487, 524, 623, 664
Alw21I GWGCWC 3 cut(s) 347, 489, 625
AlwI GGATC 1 cut(s) 438
Ama87I CYCGRG 1 cut(s) 50
AoxI GGCC 2 cut(s) 542, 759
ApeKI GCWGC 1 cut(s) 98
ApoI RAATTY 1 cut(s) 337
Asp700I GAANNNNTTC 1 cut(s) 35
AvaI CYCGRG 1 cut(s) 50
BaeI ACNNNNGTAYC 4 cut(s) 166, 199, 765, 798
BanII GRGCYC 3 cut(s) 347, 489, 625
Bbv12I GWGCWC 3 cut(s) 347, 489, 625
BbvCI CCTCAGC 1 cut(s) 62
BbvI GCAGC 1 cut(s) 85
BccI CCATC 2 cut(s) 413, 452
BceAI ACGGC 2 cut(s) 289, 373
BclI TGATCA 1 cut(s) 594
BfaI CTAG 1 cut(s) 531
BfmI CTRYAG 3 cut(s) 720, 753, 777
BfrI CTTAAG 1 cut(s) 443
BisI GCNGC 1 cut(s) 99
BlsI GCNGC 1 cut(s) 100
BmeT110I CYCGRG 1 cut(s) 50
BmsI GCATC 3 cut(s) 66, 285, 457
BpmI CTGGAG 1 cut(s) 716
Bpu10I CCTNAGC 2 cut(s) 6, 62
BsaHI GRCGYC 1 cut(s) 12
BsaJI CCNNGG 1 cut(s) 355
Bsc4I CCNNNNNNNGG 1 cut(s) 395
Bse1I ACTGG 1 cut(s) 699
Bse3DI GCAATG 1 cut(s) 132
BseDI CCNNGG 1 cut(s) 355
BseGI GGATG 1 cut(s) 57
BseLI CCNNNNNNNGG 1 cut(s) 395
BseMI GCAATG 1 cut(s) 132
BseMII CTCAG 1 cut(s) 76
BseNI ACTGG 1 cut(s) 699
BseRI GAGGAG 2 cut(s) 59, 633
BseX3I CGGCCG 1 cut(s) 542
BseXI GCAGC 1 cut(s) 85
Bsh1236I CGCG 1 cut(s) 453
Bsh1285I CGRYCG 3 cut(s) 192, 545, 805
BshFI GGCC 2 cut(s) 544, 761
BsiEI CGRYCG 3 cut(s) 192, 545, 805
BsiHKAI GWGCWC 3 cut(s) 347, 489, 625
BsiHKCI CYCGRG 1 cut(s) 50
BslI CCNNNNNNNGG 1 cut(s) 395
BsnI GGCC 2 cut(s) 544, 761
BsoBI CYCGRG 1 cut(s) 50
Bsp1286I GDGCHC 3 cut(s) 347, 489, 625
Bsp143I GATC 4 cut(s) 430, 594, 626, 646
Bsp68I TCGCGA 1 cut(s) 453
BspACI CCGC 1 cut(s) 192
BspANI GGCC 2 cut(s) 544, 761
BspCNI CTCAG 1 cut(s) 75
BspFNI CGCG 1 cut(s) 453
BspHI TCATGA 1 cut(s) 105
BspMAI CTGCAG 2 cut(s) 757, 781
BspPI GGATC 1 cut(s) 438
BspQI GCTCTTC 1 cut(s) 759
BspTI CTTAAG 1 cut(s) 443
BsrDI GCAATG 1 cut(s) 132
BsrI ACTGG 1 cut(s) 699
BssECI CCNNGG 1 cut(s) 355
BssMI GATC 4 cut(s) 430, 594, 626, 646
BssNI GRCGYC 1 cut(s) 12
BssT1I CCWWGG 1 cut(s) 355
Bst4CI ACNGT 2 cut(s) 20, 803
Bst6I CTCTTC 3 cut(s) 122, 356, 759
BstACI GRCGYC 1 cut(s) 12
BstAFI CTTAAG 1 cut(s) 443
BstC8I GCNNGC 3 cut(s) 165, 303, 440
BstDEI CTNAG 2 cut(s) 6, 62
BstF5I GGATG 1 cut(s) 57
BstFNI CGCG 1 cut(s) 453
BstKTI GATC 4 cut(s) 433, 597, 629, 649
BstMBI GATC 4 cut(s) 430, 594, 626, 646
BstMCI CGRYCG 3 cut(s) 192, 545, 805
BstMWI GCNNNNNNNGC 4 cut(s) 11, 63, 164, 629
BstNSI RCATGY 1 cut(s) 576
BstSFI CTRYAG 3 cut(s) 720, 753, 777
BstUI CGCG 1 cut(s) 453
BstV1I GCAGC 1 cut(s) 85
BstX2I RGATCY 1 cut(s) 430
BstYI RGATCY 1 cut(s) 430
BstZI CGGCCG 1 cut(s) 542
BsuRI GGCC 2 cut(s) 544, 761
BtgZI GCGATG 2 cut(s) 229, 434
BtsCI GGATG 1 cut(s) 57
BtsI GCAGTG 2 cut(s) 383, 513
BtsIMutI CAGTG 4 cut(s) 214, 383, 513, 604
BtuMI TCGCGA 1 cut(s) 453
Cac8I GCNNGC 3 cut(s) 165, 303, 440
CciI TCATGA 1 cut(s) 105
CseI GACGC 2 cut(s) 20, 507
Csp6I GTAC 5 cut(s) 183, 505, 774, 782, 807
CviAII CATG 5 cut(s) 106, 155, 331, 573, 634
CviQI GTAC 5 cut(s) 183, 505, 774, 782, 807
DdeI CTNAG 2 cut(s) 6, 62
DpnI GATC 4 cut(s) 432, 596, 628, 648
DpnII GATC 4 cut(s) 430, 594, 626, 646
EaeI YGGCCR 1 cut(s) 542
EagI CGGCCG 1 cut(s) 542
Eam1104I CTCTTC 3 cut(s) 122, 356, 759
EarI CTCTTC 3 cut(s) 122, 356, 759
Ecl136II GAGCTC 3 cut(s) 345, 487, 623
EclXI CGGCCG 1 cut(s) 542
Eco130I CCWWGG 1 cut(s) 355
Eco24I GRGCYC 3 cut(s) 347, 489, 625
Eco52I CGGCCG 1 cut(s) 542
Eco53kI GAGCTC 3 cut(s) 345, 487, 623
Eco57I CTGAAG 1 cut(s) 163
Eco88I CYCGRG 1 cut(s) 50
EcoICRI GAGCTC 3 cut(s) 345, 487, 623
EcoT14I CCWWGG 1 cut(s) 355
EcoT38I GRGCYC 3 cut(s) 347, 489, 625
ErhI CCWWGG 1 cut(s) 355
FaeI CATG 5 cut(s) 109, 158, 334, 576, 637
FatI CATG 5 cut(s) 105, 154, 330, 572, 633
FbaI TGATCA 1 cut(s) 594
Fnu4HI GCNGC 1 cut(s) 99
FokI GGATG 1 cut(s) 44
FriOI GRGCYC 3 cut(s) 347, 489, 625
Fsp4HI GCNGC 1 cut(s) 99
FspBI CTAG 1 cut(s) 531
GluI GCNGC 1 cut(s) 99
GsuI CTGGAG 1 cut(s) 716
HaeIII GGCC 2 cut(s) 544, 761
HgaI GACGC 2 cut(s) 20, 507
Hin1I GRCGYC 1 cut(s) 12
Hin1II CATG 5 cut(s) 109, 158, 334, 576, 637
HindIII AAGCTT 2 cut(s) 230, 440
HinfI GANTC 2 cut(s) 538, 736
Hpy166II GTNNAC 2 cut(s) 692, 809
Hpy188I TCNGA 2 cut(s) 145, 254
Hpy188III TCNNGA 3 cut(s) 44, 106, 452
Hpy8I GTNNAC 2 cut(s) 692, 809
Hpy99I CGWCG 1 cut(s) 458
HpyAV CCTTC 1 cut(s) 50
HpyCH4III ACNGT 2 cut(s) 20, 803
HpyCH4V TGCA 3 cut(s) 438, 755, 779
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 63, 164, 629
HpyF3I CTNAG 2 cut(s) 6, 62
Hsp92I GRCGYC 1 cut(s) 12
Hsp92II CATG 5 cut(s) 109, 158, 334, 576, 637
Ksp22I TGATCA 1 cut(s) 594
Kzo9I GATC 4 cut(s) 430, 594, 626, 646
LguI GCTCTTC 1 cut(s) 759
LmnI GCTCC 2 cut(s) 461, 620
LpnPI CCDG 3 cut(s) 287, 680, 755
Lsp1109I GCAGC 1 cut(s) 85
LweI GCATC 3 cut(s) 66, 285, 457
MaeI CTAG 1 cut(s) 531
MaeIII GTNAC 3 cut(s) 20, 575, 602
MalI GATC 4 cut(s) 432, 596, 628, 648
MboI GATC 4 cut(s) 430, 594, 626, 646
MboII GAAGA 6 cut(s) 109, 212, 373, 566, 656, 776
MflI RGATCY 1 cut(s) 430
MhlI GDGCHC 3 cut(s) 347, 489, 625
MluCI AATT 4 cut(s) 139, 202, 337, 813
MmeI TCCRAC 1 cut(s) 232
MroXI GAANNNNTTC 1 cut(s) 35
MseI TTAA 2 cut(s) 234, 444
MslI CAYNNNNRTG 1 cut(s) 654
MspCI CTTAAG 1 cut(s) 443
MvnI CGCG 1 cut(s) 453
MwoI GCNNNNNNNGC 4 cut(s) 11, 63, 164, 629
NdeII GATC 4 cut(s) 430, 594, 626, 646
NlaIII CATG 5 cut(s) 109, 158, 334, 576, 637
NmeAIII GCCGAG 2 cut(s) 193, 570
NruI TCGCGA 1 cut(s) 453
NspI RCATGY 1 cut(s) 576
PaeR7I CTCGAG 1 cut(s) 50
PagI TCATGA 1 cut(s) 105
PciI ACATGT 1 cut(s) 572
PciSI GCTCTTC 1 cut(s) 759
PdmI GAANNNNTTC 1 cut(s) 35
PfeI GAWTC 2 cut(s) 538, 736
PkrI GCNGC 1 cut(s) 100
PscI ACATGT 1 cut(s) 572
PsiI TTATAA 1 cut(s) 312
Psp124BI GAGCTC 3 cut(s) 347, 489, 625
PspXI VCTCGAGB 1 cut(s) 50
PstI CTGCAG 2 cut(s) 757, 781
PsuI RGATCY 1 cut(s) 430
RruI TCGCGA 1 cut(s) 453
RsaI GTAC 5 cut(s) 184, 506, 775, 783, 808
RsaNI GTAC 5 cut(s) 183, 505, 774, 782, 807
RseI CAYNNNNRTG 1 cut(s) 654
SacI GAGCTC 3 cut(s) 347, 489, 625
SapI GCTCTTC 1 cut(s) 759
SaqAI TTAA 2 cut(s) 234, 444
SatI GCNGC 1 cut(s) 99
Sau3AI GATC 4 cut(s) 430, 594, 626, 646
SduI GDGCHC 3 cut(s) 347, 489, 625
SfaNI GCATC 3 cut(s) 66, 285, 457
SfcI CTRYAG 3 cut(s) 720, 753, 777
Sfr274I CTCGAG 1 cut(s) 50
SlaI CTCGAG 1 cut(s) 50
SmiMI CAYNNNNRTG 1 cut(s) 654
SmlI CTYRAG 2 cut(s) 50, 443
SmoI CTYRAG 2 cut(s) 50, 443
Sse9I AATT 4 cut(s) 139, 202, 337, 813
SsiI CCGC 1 cut(s) 192
SspI AATATT 1 cut(s) 217
SspMI CTAG 1 cut(s) 531
SstI GAGCTC 3 cut(s) 347, 489, 625
StyI CCWWGG 1 cut(s) 355
TaaI ACNGT 2 cut(s) 20, 803
TaqI TCGA 2 cut(s) 51, 625
TasI AATT 4 cut(s) 139, 202, 337, 813
TatI WGTACW 1 cut(s) 781
TfiI GAWTC 2 cut(s) 538, 736
Tru1I TTAA 2 cut(s) 234, 444
Tru9I TTAA 2 cut(s) 234, 444
TscAI CASTG 4 cut(s) 214, 390, 520, 604
TseI GCWGC 1 cut(s) 98
TspDTI ATGAA 2 cut(s) 657, 779
TspRI CASTG 4 cut(s) 214, 390, 520, 604
Vha464I CTTAAG 1 cut(s) 443
XapI RAATTY 1 cut(s) 337
XceI RCATGY 1 cut(s) 576
XhoI CTCGAG 1 cut(s) 50
XmnI GAANNNNTTC 1 cut(s) 35
XspI CTAG 1 cut(s) 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.