Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0005547

Physical Location & Seq

Genomic Coordinates Reverse (-)

65251422 .. 65252135

Gene Structure 714 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG444100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGAGGGCCGCTTATGCATTGCGTAGTTGCTTCGACATATGCTCCTCTATTTGCTTTATCTGTGTTGTTGTCACGGGCGTCACCACGATTGGTATTGCGGTGAAGAGAGAATCTAAAACTCCCTATCACTCAAACATCCATGTAACTGATGCTTTGCTCACCGAATTCACCATCATCACCACCAAGAACACCGACACCCTCCATTATAATCTCGTCCTCCACATCACCTTCCGAAACCCCAACAAGGATTTCGGCATACATCATCATAACATTACGGTCACGGCTTATTACCAAGATAAGAGGTTTGTTGCGGAGAACTATTCTCATATGTTTTACCAAGAGAAAAATGATACAACTCCGCTCAAGTTGTCATTCAAAGGACAGCAGGACATGGATACTCTTGGGGTTGAAAAGGATCTTAATTCGGAGGCTAAGCATCAGTGTGCACACGGCAAGGACAACAATGTTGGATCAGCTAATAATAATTACGACATTCTTGTCAGACTCTATCTTCAAAGCACTGCAATTCCTAAAGCCGCGTTCAAGAAGAATTGGAAAGTGAACTCCCAGTTCATATGCGACTTGAAGAAGGTTCCATTGATCAAGTCGGCAAATTATTTCCCTAGTACTTTCAAGTCTATCGAATGTGATTCCTATTTCCCGCAAGTATATCATGCATCCGGCCTTCACAGTGTAAACGATTTGTTTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0007275 GO:0007568 GO:0008150 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009615 GO:0010150 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0055044 GO:0071944 GO:0090693 GO:0098542 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

237

Amino Acids

26.93

Weight (kDa)

8.58

Isoelectric Point (pI)

41.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_2	PF03168	75 - 129	1.4e-06	Late embryogenesis abundant protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005547)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g32184 FvH4_7g32210
rosa_chinensis	RchiOBHm_Chr3g0448411
rosa_multiflora	Rmu_sc0003308.1_g000008 Rmu_sc0008418.1_g000004 Rmu_sc0008418.1_g000005 Rmu_sc0010238.1_g000009 Rmu_sc0010238.1_g000010
rosa_roxburghii	Rroxscaffold_4G00278410 Rroxscaffold_4G00278420 Rroxscaffold_6G00426600
rosa_rugosa	Rorug02G0612200
rosa_samantha	Rh1AG454600 Rh1AG454700 Rh1BG411900 Rh1BG412000 Rh1CG426500 Rh1DG444100 Rh1DG444200 Rh3AG011500 Rh3AG011600 Rh3BG011300 Rh3BG011400 Rh3CG011000 Rh3CG011100 Rh3DG011700 Rh3DG011800
rosa_wichuraiana	Rw0G013340 Rw0G013350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	207
AasI	GACNNNNNNGTC	1 cut(s)	497
AccBSI	CCGCTC	1 cut(s)	361
AccII	CGCG	1 cut(s)	539
AciI	CCGC	6 cut(s)	9, 98, 311, 359, 537, 662
AclWI	GGATC	2 cut(s)	423, 478
AcsI	RAATTY	1 cut(s)	164
AcyI	GRCGYC	1 cut(s)	78
AfaI	GTAC	1 cut(s)	628
AfiI	CCNNNNNNNGG	1 cut(s)	244
AgsI	TTSAA	6 cut(s)	376, 410, 515, 544, 586, 634
AjuI	GAANNNNNNNTTGG	2 cut(s)	233, 265
AluBI	AGCT	1 cut(s)	476
AluI	AGCT	1 cut(s)	476
Alw21I	GWGCWC	1 cut(s)	448
Alw44I	GTGCAC	1 cut(s)	444
AlwI	GGATC	2 cut(s)	423, 478
AoxI	GGCC	2 cut(s)	6, 682
ApaLI	GTGCAC	1 cut(s)	444
ApoI	RAATTY	1 cut(s)	164
AspS9I	GGNCC	1 cut(s)	6
AsuHPI	GGTGA	6 cut(s)	73, 112, 151, 160, 169, 217
BaeGI	GKGCMC	1 cut(s)	448
Bbv12I	GWGCWC	1 cut(s)	448
BccI	CCATC	1 cut(s)	179
BceAI	ACGGC	2 cut(s)	297, 466
BciVI	GTATCC	1 cut(s)	388
BclI	TGATCA	1 cut(s)	600
BfaI	CTAG	1 cut(s)	624
BfuI	GTATCC	1 cut(s)	388
BisI	GCNGC	2 cut(s)	9, 537
BlpI	GCTNAGC	1 cut(s)	432
BlsI	GCNGC	2 cut(s)	10, 538
BmcAI	AGTACT	1 cut(s)	628
BmgT120I	GGNCC	1 cut(s)	6
BmiI	GGNNCC	1 cut(s)	594
BmrI	ACTGGG	1 cut(s)	562
BmsI	GCATC	3 cut(s)	139, 445, 686
BmuI	ACTGGG	1 cut(s)	562
Bpu1102I	GCTNAGC	1 cut(s)	432
BpuEI	CTTGAG	1 cut(s)	347
BsaHI	GRCGYC	1 cut(s)	78
BsaXI	ACNNNNNCTCC	2 cut(s)	26, 56
Bsc4I	CCNNNNNNNGG	1 cut(s)	244
Bse1I	ACTGG	1 cut(s)	568
Bse3DI	GCAATG	1 cut(s)	17
BseGI	GGATG	2 cut(s)	135, 677
BseLI	CCNNNNNNNGG	1 cut(s)	244
BseMI	GCAATG	1 cut(s)	17
BseNI	ACTGG	1 cut(s)	568
BseRI	GAGGAG	1 cut(s)	34
BseSI	GKGCMC	1 cut(s)	448
Bsh1236I	CGCG	1 cut(s)	539
BshFI	GGCC	2 cut(s)	8, 684
BsiHKAI	GWGCWC	1 cut(s)	448
BsiSI	CCGG	1 cut(s)	681
BslI	CCNNNNNNNGG	1 cut(s)	244
BsnI	GGCC	2 cut(s)	8, 684
Bsp1286I	GDGCHC	1 cut(s)	448
Bsp143I	GATC	3 cut(s)	415, 470, 600
Bsp1720I	GCTNAGC	1 cut(s)	432
BspACI	CCGC	6 cut(s)	9, 98, 311, 359, 537, 662
BspANI	GGCC	2 cut(s)	8, 684
BspFNI	CGCG	1 cut(s)	539
BspLI	GGNNCC	1 cut(s)	594
BspPI	GGATC	2 cut(s)	423, 478
BsrBI	CCGCTC	1 cut(s)	361
BsrDI	GCAATG	1 cut(s)	17
BsrI	ACTGG	1 cut(s)	568
BssMI	GATC	3 cut(s)	415, 470, 600
BssNI	GRCGYC	1 cut(s)	78
Bst4CI	ACNGT	2 cut(s)	277, 692
Bst6I	CTCTTC	1 cut(s)	98
BstACI	GRCGYC	1 cut(s)	78
BstDEI	CTNAG	1 cut(s)	432
BstF5I	GGATG	2 cut(s)	135, 677
BstFNI	CGCG	1 cut(s)	539
BstKTI	GATC	3 cut(s)	418, 473, 603
BstMBI	GATC	3 cut(s)	415, 470, 600
BstMWI	GCNNNNNNNGC	1 cut(s)	14
BstSLI	GKGCMC	1 cut(s)	448
BstUI	CGCG	1 cut(s)	539
BstX2I	RGATCY	1 cut(s)	415
BstYI	RGATCY	1 cut(s)	415
BsuI	GTATCC	1 cut(s)	388
BsuRI	GGCC	2 cut(s)	8, 684
BtsCI	GGATG	2 cut(s)	135, 677
BtsI	GCAGTG	1 cut(s)	519
BtsIMutI	CAGTG	3 cut(s)	446, 519, 697
Cfr13I	GGNCC	1 cut(s)	6
CseI	GACGC	1 cut(s)	67
Csp6I	GTAC	1 cut(s)	627
CviAII	CATG	3 cut(s)	140, 391, 674
CviJI	RGCY	6 cut(s)	8, 284, 431, 476, 536, 684
CviKI_1	RGCY	6 cut(s)	8, 284, 431, 476, 536, 684
CviQI	GTAC	1 cut(s)	627
DdeI	CTNAG	1 cut(s)	432
DpnI	GATC	3 cut(s)	417, 472, 602
DpnII	GATC	3 cut(s)	415, 470, 600
DrdI	GACNNNNNNGTC	1 cut(s)	497
DseDI	GACNNNNNNGTC	1 cut(s)	497
Eam1104I	CTCTTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	98
EcoRI	GAATTC	1 cut(s)	164
EcoT22I	ATGCAT	2 cut(s)	19, 679
FaeI	CATG	3 cut(s)	143, 394, 677
FatI	CATG	3 cut(s)	139, 390, 673
FauI	CCCGC	1 cut(s)	669
FauNDI	CATATG	3 cut(s)	38, 327, 575
FbaI	TGATCA	1 cut(s)	600
Fnu4HI	GCNGC	2 cut(s)	9, 537
FokI	GGATG	2 cut(s)	122, 664
Fsp4HI	GCNGC	2 cut(s)	9, 537
FspBI	CTAG	1 cut(s)	624
GluI	GCNGC	2 cut(s)	9, 537
HaeIII	GGCC	2 cut(s)	8, 684
HapII	CCGG	1 cut(s)	681
HgaI	GACGC	1 cut(s)	67
Hin1I	GRCGYC	1 cut(s)	78
Hin1II	CATG	3 cut(s)	143, 394, 677
HinfI	GANTC	3 cut(s)	110, 504, 650
HpaII	CCGG	1 cut(s)	681
HphI	GGTGA	6 cut(s)	73, 112, 151, 160, 169, 217
Hpy166II	GTNNAC	3 cut(s)	446, 562, 697
Hpy188I	TCNGA	3 cut(s)	233, 427, 503
Hpy188III	TCNNGA	1 cut(s)	544
Hpy8I	GTNNAC	3 cut(s)	446, 562, 697
HpyAV	CCTTC	3 cut(s)	238, 583, 695
HpyCH4III	ACNGT	2 cut(s)	277, 692
HpyCH4V	TGCA	4 cut(s)	17, 446, 524, 677
HpyF10VI	GCNNNNNNNGC	1 cut(s)	14
HpyF3I	CTNAG	1 cut(s)	432
Hsp92I	GRCGYC	1 cut(s)	78
Hsp92II	CATG	3 cut(s)	143, 394, 677
Ksp22I	TGATCA	1 cut(s)	600
Kzo9I	GATC	3 cut(s)	415, 470, 600
LmnI	GCTCC	1 cut(s)	47
LpnPI	CCDG	3 cut(s)	371, 581, 694
LweI	GCATC	3 cut(s)	139, 445, 686
MaeI	CTAG	1 cut(s)	624
MaeIII	GTNAC	4 cut(s)	70, 79, 142, 277
MalI	GATC	3 cut(s)	417, 472, 602
MbiI	CCGCTC	1 cut(s)	361
MboI	GATC	3 cut(s)	415, 470, 600
MboII	GAAGA	4 cut(s)	115, 503, 559, 598
MflI	RGATCY	1 cut(s)	415
MhlI	GDGCHC	1 cut(s)	448
MluCI	AATT	6 cut(s)	164, 421, 484, 525, 550, 613
MlyI	GAGTC	1 cut(s)	498
MmeI	TCCRAC	1 cut(s)	448
MnlI	CCTC	5 cut(s)	55, 209, 227, 294, 421
Mph1103I	ATGCAT	2 cut(s)	19, 679
MseI	TTAA	2 cut(s)	420, 712
MslI	CAYNNNNRTG	1 cut(s)	441
MspI	CCGG	1 cut(s)	681
MvnI	CGCG	1 cut(s)	539
MwoI	GCNNNNNNNGC	1 cut(s)	14
NdeI	CATATG	3 cut(s)	38, 327, 575
NdeII	GATC	3 cut(s)	415, 470, 600
NlaIII	CATG	3 cut(s)	143, 394, 677
NlaIV	GGNNCC	1 cut(s)	594
NmuCI	GTSAC	3 cut(s)	70, 79, 277
NsiI	ATGCAT	2 cut(s)	19, 679
PfeI	GAWTC	2 cut(s)	110, 650
PkrI	GCNGC	2 cut(s)	10, 538
PleI	GAGTC	1 cut(s)	498
PpsI	GAGTC	1 cut(s)	498
PsiI	TTATAA	1 cut(s)	207
PspN4I	GGNNCC	1 cut(s)	594
PspPI	GGNCC	1 cut(s)	6
PsuI	RGATCY	1 cut(s)	415
RsaI	GTAC	1 cut(s)	628
RsaNI	GTAC	1 cut(s)	627
RseI	CAYNNNNRTG	1 cut(s)	441
SaqAI	TTAA	2 cut(s)	420, 712
SatI	GCNGC	2 cut(s)	9, 537
Sau3AI	GATC	3 cut(s)	415, 470, 600
Sau96I	GGNCC	1 cut(s)	6
ScaI	AGTACT	1 cut(s)	628
SchI	GAGTC	1 cut(s)	498
SduI	GDGCHC	1 cut(s)	448
SetI	ASST	4 cut(s)	230, 305, 478, 594
SfaNI	GCATC	3 cut(s)	139, 445, 686
SmiMI	CAYNNNNRTG	1 cut(s)	441
SmlI	CTYRAG	1 cut(s)	362
SmoI	CTYRAG	1 cut(s)	362
Sse9I	AATT	6 cut(s)	164, 421, 484, 525, 550, 613
SsiI	CCGC	6 cut(s)	9, 98, 311, 359, 537, 662
SspMI	CTAG	1 cut(s)	624
TaaI	ACNGT	2 cut(s)	277, 692
TaqI	TCGA	2 cut(s)	33, 642
TasI	AATT	6 cut(s)	164, 421, 484, 525, 550, 613
TatI	WGTACW	1 cut(s)	626
TauI	GCSGC	2 cut(s)	11, 539
TfiI	GAWTC	2 cut(s)	110, 650
Tru1I	TTAA	2 cut(s)	420, 712
Tru9I	TTAA	2 cut(s)	420, 712
TscAI	CASTG	3 cut(s)	446, 526, 697
TseFI	GTSAC	3 cut(s)	70, 79, 277
Tsp45I	GTSAC	3 cut(s)	70, 79, 277
TspDTI	ATGAA	1 cut(s)	562
TspRI	CASTG	3 cut(s)	446, 526, 697
VneI	GTGCAC	1 cut(s)	444
XapI	RAATTY	1 cut(s)	164
XspI	CTAG	1 cut(s)	624
ZrmI	AGTACT	1 cut(s)	628
Zsp2I	ATGCAT	2 cut(s)	19, 679

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.