Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0005547

Physical Location & Seq

Genomic Coordinates Forward (+)

23186805 .. 23187691

Gene Structure 887 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g32210.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGCTCCACCATTCTTTTGATCTGTGTTGGCGTAATCGCGATTGGTATAGTCACGAAAACAGAATCAAAAACTCCCTATCACAAAACATCCATGTCACTGATGCTTTGCTAAGGGAATTCACCTTTGTCACCACAAAGAACACCGACACCCTCCACTATAATCTCGTCCTCCATGTCACCCTCCGAAACCCCAACAAGGATTTCAGCATACTTCAAGATAACATTGCGGTCATGGCTTATTACCAAGACAAGAAGTTCGTTGCAGAGAACTATTCTCATATCTTCTACCAAGAGAAAGATGGTACAACTCTTCTCAAGTTGTCATTCAAAGGGCAGCAGGACATGGATAGTACTCTTGGAGTTCAAAAGCATCTTAATTCTGAGGCTAAGCAGCATCAATGTGCACGCGTCGAGGACAACAATGTTGGATCAGCTAATAATAGTTATGACATTGTTGTCAGACTCTATCTTCAGAACACTGCAGTCCCTAAGGAGGCGTTTAAGAAGTATTGGAATGTGAACTCGCAGTTCATATGCGACTTAAAGAAGGTTCCGGTTCTGAATTCAACGAATTATTTCAAGACTACTGAATGTGATTCCTATTTCCTGCAAGGAATTGGAGTACTCTCCCTTCCAAACATTGAGCCACATAATCAAGCCTTAAATCTTGAAGTCAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0007275 GO:0007568 GO:0008150 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009615 GO:0010150 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0055044 GO:0071944 GO:0090693 GO:0098542 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

227

Amino Acids

26.34

Weight (kDa)

7.14

Isoelectric Point (pI)

46.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005547)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g32184 FvH4_7g32210
rosa_chinensis	RchiOBHm_Chr3g0448411
rosa_multiflora	Rmu_sc0003308.1_g000008 Rmu_sc0008418.1_g000004 Rmu_sc0008418.1_g000005 Rmu_sc0010238.1_g000009 Rmu_sc0010238.1_g000010
rosa_roxburghii	Rroxscaffold_4G00278410 Rroxscaffold_4G00278420 Rroxscaffold_6G00426600
rosa_rugosa	Rorug02G0612200
rosa_samantha	Rh1AG454600 Rh1AG454700 Rh1BG411900 Rh1BG412000 Rh1CG426500 Rh1DG444100 Rh1DG444200 Rh3AG011500 Rh3AG011600 Rh3BG011300 Rh3BG011400 Rh3CG011000 Rh3CG011100 Rh3DG011700 Rh3DG011800
rosa_wichuraiana	Rw0G013340 Rw0G013350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	455
AccII	CGCG	2 cut(s)	39, 408
AciI	CCGC	1 cut(s)	227
AclWI	GGATC	1 cut(s)	436
AcsI	RAATTY	2 cut(s)	116, 562
AcuI	CTGAAG	1 cut(s)	455
AfaI	GTAC	3 cut(s)	304, 352, 624
AfiI	CCNNNNNNNGG	2 cut(s)	196, 493
AflIII	ACRYGT	1 cut(s)	406
AgsI	TTSAA	6 cut(s)	215, 328, 365, 567, 580, 671
AjuI	GAANNNNNNNTTGG	2 cut(s)	185, 217
AluBI	AGCT	1 cut(s)	434
AluI	AGCT	1 cut(s)	434
Alw21I	GWGCWC	1 cut(s)	406
Alw44I	GTGCAC	1 cut(s)	402
AlwI	GGATC	1 cut(s)	436
ApaLI	GTGCAC	1 cut(s)	402
ApeKI	GCWGC	2 cut(s)	334, 391
ApoI	RAATTY	2 cut(s)	116, 562
ArsI	GACNNNNNNTTYG	2 cut(s)	239, 271
Asp700I	GAANNNNTTC	1 cut(s)	575
AsuHPI	GGTGA	3 cut(s)	112, 121, 169
AxyI	CCTNAGG	1 cut(s)	489
BaeGI	GKGCMC	1 cut(s)	406
BarI	GAAGNNNNNNTAC	2 cut(s)	615, 647
Bbv12I	GWGCWC	1 cut(s)	406
BbvI	GCAGC	2 cut(s)	346, 403
BccI	CCATC	1 cut(s)	293
BfmI	CTRYAG	1 cut(s)	480
BisI	GCNGC	2 cut(s)	335, 392
BlpI	GCTNAGC	1 cut(s)	387
BlsI	GCNGC	2 cut(s)	336, 393
BmcAI	AGTACT	2 cut(s)	352, 624
BmiI	GGNNCC	1 cut(s)	552
BmsI	GCATC	3 cut(s)	91, 379, 403
Bpu10I	CCTNAGC	1 cut(s)	110
Bpu1102I	GCTNAGC	1 cut(s)	387
BpuEI	CTTGAG	1 cut(s)	299
BsaWI	WCCGGW	1 cut(s)	553
Bsc4I	CCNNNNNNNGG	2 cut(s)	196, 493
Bse21I	CCTNAGG	1 cut(s)	489
Bse3DI	GCAATG	1 cut(s)	222
BseGI	GGATG	1 cut(s)	87
BseLI	CCNNNNNNNGG	2 cut(s)	196, 493
BseMI	GCAATG	1 cut(s)	222
BseMII	CTCAG	1 cut(s)	372
BseSI	GKGCMC	1 cut(s)	406
BseXI	GCAGC	2 cut(s)	346, 403
Bsh1236I	CGCG	2 cut(s)	39, 408
BsiHKAI	GWGCWC	1 cut(s)	406
BsiSI	CCGG	1 cut(s)	554
BslFI	GGGAC	1 cut(s)	470
BslI	CCNNNNNNNGG	2 cut(s)	196, 493
BsmFI	GGGAC	1 cut(s)	470
Bsp1286I	GDGCHC	1 cut(s)	406
Bsp143I	GATC	2 cut(s)	19, 428
Bsp1720I	GCTNAGC	1 cut(s)	387
Bsp68I	TCGCGA	1 cut(s)	39
BspACI	CCGC	1 cut(s)	227
BspCNI	CTCAG	1 cut(s)	373
BspFNI	CGCG	2 cut(s)	39, 408
BspLI	GGNNCC	1 cut(s)	552
BspMAI	CTGCAG	1 cut(s)	484
BspPI	GGATC	1 cut(s)	436
BsrDI	GCAATG	1 cut(s)	222
BssMI	GATC	2 cut(s)	19, 428
Bst6I	CTCTTC	1 cut(s)	315
BstC8I	GCNNGC	1 cut(s)	406
BstDEI	CTNAG	4 cut(s)	110, 381, 387, 489
BstF5I	GGATG	1 cut(s)	87
BstFNI	CGCG	2 cut(s)	39, 408
BstKTI	GATC	2 cut(s)	22, 431
BstMBI	GATC	2 cut(s)	19, 428
BstMWI	GCNNNNNNNGC	1 cut(s)	233
BstSFI	CTRYAG	1 cut(s)	480
BstSLI	GKGCMC	1 cut(s)	406
BstUI	CGCG	2 cut(s)	39, 408
BstV1I	GCAGC	2 cut(s)	346, 403
Bsu36I	CCTNAGG	1 cut(s)	489
BtsCI	GGATG	1 cut(s)	87
BtsI	GCAGTG	1 cut(s)	477
BtsIMutI	CAGTG	2 cut(s)	96, 477
BtuMI	TCGCGA	1 cut(s)	39
Cac8I	GCNNGC	1 cut(s)	406
CseI	GACGC	1 cut(s)	397
Csp6I	GTAC	3 cut(s)	303, 351, 623
CviAII	CATG	4 cut(s)	92, 173, 232, 343
CviJI	RGCY	5 cut(s)	236, 386, 434, 646, 659
CviKI_1	RGCY	5 cut(s)	236, 386, 434, 646, 659
CviQI	GTAC	3 cut(s)	303, 351, 623
DdeI	CTNAG	4 cut(s)	110, 381, 387, 489
DpnI	GATC	2 cut(s)	21, 430
DpnII	GATC	2 cut(s)	19, 428
DrdI	GACNNNNNNGTC	1 cut(s)	455
DseDI	GACNNNNNNGTC	1 cut(s)	455
Eam1104I	CTCTTC	1 cut(s)	315
EarI	CTCTTC	1 cut(s)	315
Eco57I	CTGAAG	1 cut(s)	455
Eco81I	CCTNAGG	1 cut(s)	489
EcoRI	GAATTC	2 cut(s)	116, 562
FaeI	CATG	4 cut(s)	95, 176, 235, 346
FaqI	GGGAC	1 cut(s)	470
FatI	CATG	4 cut(s)	91, 172, 231, 342
FauNDI	CATATG	1 cut(s)	533
Fnu4HI	GCNGC	2 cut(s)	335, 392
FokI	GGATG	1 cut(s)	74
Fsp4HI	GCNGC	2 cut(s)	335, 392
GluI	GCNGC	2 cut(s)	335, 392
HapII	CCGG	1 cut(s)	554
HgaI	GACGC	1 cut(s)	397
Hin1II	CATG	4 cut(s)	95, 176, 235, 346
HinfI	GANTC	3 cut(s)	63, 462, 596
HpaII	CCGG	1 cut(s)	554
HphI	GGTGA	3 cut(s)	112, 121, 169
Hpy166II	GTNNAC	2 cut(s)	404, 520
Hpy188I	TCNGA	5 cut(s)	185, 382, 461, 474, 561
Hpy188III	TCNNGA	5 cut(s)	38, 53, 215, 580, 668
Hpy8I	GTNNAC	2 cut(s)	404, 520
Hpy99I	CGWCG	1 cut(s)	413
HpyAV	CCTTC	2 cut(s)	541, 641
HpyCH4V	TGCA	4 cut(s)	263, 404, 482, 610
HpyF10VI	GCNNNNNNNGC	1 cut(s)	233
HpyF3I	CTNAG	4 cut(s)	110, 381, 387, 489
Hsp92II	CATG	4 cut(s)	95, 176, 235, 346
Kzo9I	GATC	2 cut(s)	19, 428
LmnI	GCTCC	1 cut(s)	9
LpnPI	CCDG	4 cut(s)	323, 567, 620, 661
Lsp1109I	GCAGC	2 cut(s)	346, 403
LweI	GCATC	3 cut(s)	91, 379, 403
MaeIII	GTNAC	4 cut(s)	50, 94, 127, 175
MalI	GATC	2 cut(s)	21, 430
MboI	GATC	2 cut(s)	19, 428
MboII	GAAGA	3 cut(s)	274, 302, 461
MhlI	GDGCHC	1 cut(s)	406
MluCI	AATT	5 cut(s)	116, 376, 562, 571, 615
MluI	ACGCGT	1 cut(s)	406
MlyI	GAGTC	1 cut(s)	456
MmeI	TCCRAC	1 cut(s)	406
MnlI	CCTC	6 cut(s)	161, 179, 191, 376, 406, 487
MroXI	GAANNNNTTC	1 cut(s)	575
MseI	TTAA	4 cut(s)	375, 501, 542, 662
MslI	CAYNNNNRTG	1 cut(s)	399
MspI	CCGG	1 cut(s)	554
MvnI	CGCG	2 cut(s)	39, 408
MwoI	GCNNNNNNNGC	1 cut(s)	233
NdeI	CATATG	1 cut(s)	533
NdeII	GATC	2 cut(s)	19, 428
NlaIII	CATG	4 cut(s)	95, 176, 235, 346
NlaIV	GGNNCC	1 cut(s)	552
NmuCI	GTSAC	4 cut(s)	50, 94, 127, 175
NruI	TCGCGA	1 cut(s)	39
PdmI	GAANNNNTTC	1 cut(s)	575
PfeI	GAWTC	2 cut(s)	63, 596
PkrI	GCNGC	2 cut(s)	336, 393
PleI	GAGTC	1 cut(s)	456
PpsI	GAGTC	1 cut(s)	456
PspN4I	GGNNCC	1 cut(s)	552
PstI	CTGCAG	1 cut(s)	484
RruI	TCGCGA	1 cut(s)	39
RsaI	GTAC	3 cut(s)	304, 352, 624
RsaNI	GTAC	3 cut(s)	303, 351, 623
RseI	CAYNNNNRTG	1 cut(s)	399
SaqAI	TTAA	4 cut(s)	375, 501, 542, 662
SatI	GCNGC	2 cut(s)	335, 392
Sau3AI	GATC	2 cut(s)	19, 428
ScaI	AGTACT	2 cut(s)	352, 624
SchI	GAGTC	1 cut(s)	456
SduI	GDGCHC	1 cut(s)	406
SetI	ASST	4 cut(s)	125, 436, 552, 680
SfaNI	GCATC	3 cut(s)	91, 379, 403
SfcI	CTRYAG	1 cut(s)	480
SmiMI	CAYNNNNRTG	1 cut(s)	399
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
Sse9I	AATT	5 cut(s)	116, 376, 562, 571, 615
SsiI	CCGC	1 cut(s)	227
TaqI	TCGA	1 cut(s)	411
TasI	AATT	5 cut(s)	116, 376, 562, 571, 615
TatI	WGTACW	2 cut(s)	350, 622
TfiI	GAWTC	2 cut(s)	63, 596
Tru1I	TTAA	4 cut(s)	375, 501, 542, 662
Tru9I	TTAA	4 cut(s)	375, 501, 542, 662
TscAI	CASTG	2 cut(s)	103, 484
TseFI	GTSAC	4 cut(s)	50, 94, 127, 175
TseI	GCWGC	2 cut(s)	334, 391
Tsp45I	GTSAC	4 cut(s)	50, 94, 127, 175
TspDTI	ATGAA	1 cut(s)	520
TspRI	CASTG	2 cut(s)	103, 484
VneI	GTGCAC	1 cut(s)	402
XapI	RAATTY	2 cut(s)	116, 562
XcmI	CCANNNNNNNNNTGG	1 cut(s)	296
XmnI	GAANNNNTTC	1 cut(s)	575
ZrmI	AGTACT	2 cut(s)	352, 624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.