Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0013735

Physical Location & Seq

Genomic Coordinates Reverse (-)

4768807 .. 4769061

Gene Structure 255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1029200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGGCGACGGTGGAGGAGCAGAAGAGGATGTATTTTGATTCGAAAGATGCGTTGACCATGGTTGAGGAGCTGAGGGCCAGCTATAATTCCGGCAAGACCAGAAGCTACGAGTGGAGGGAGTCGCAGCTGAACAACCTCTTGAAGGTGGCGGAGCTTCACGAACAAGAGATCGTCGATGCTCTTCGGTCAGACCTCTCCAAACCTGAATTTGAAGCCTACGTTCAAGAGGTTAGGTTCCTCTCTCTCCACCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004028 GO:0004029 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005794 GO:0005911 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009269 GO:0009414 GO:0009415 GO:0009506 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0012505 GO:0016020 GO:0016491 GO:0016620 GO:0016903 GO:0030054 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0055044 GO:0055114 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldedh

Protein Analysis

85

Amino Acids

9.99

Weight (kDa)

5.16

Isoelectric Point (pI)

53.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013735)

Species	Orthologous Gene IDs
malus_domestica	MD00G1029200.v1.1
pyrus_communis	pycom08g13770
rosa_chinensis	RchiOBHm_Chr6g0296181
rosa_multiflora	Rmu_co8154236.1_g000001 Rmu_co8256199.1_g000001 Rmu_sc0007413.1_g000001 Rmu_sc0019544.1_g000004
rosa_roxburghii	Rroxscaffold_7G00171770 Rroxscaffold_7G00178280
rosa_rugosa	Rorug04G0204800 Rorug06G0259000 Rorug06G0259100
rosa_samantha	Rh4BG268200 Rh4CG279300 Rh5AG220000 Rh7AG088400
rosa_wichuraiana	Rw2G019540 Rw4G035980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	149
AcsI	RAATTY	1 cut(s)	206
AfiI	CCNNNNNNNGG	1 cut(s)	142
AgsI	TTSAA	3 cut(s)	142, 212, 224
AluBI	AGCT	5 cut(s)	70, 81, 105, 127, 154
AluI	AGCT	5 cut(s)	70, 81, 105, 127, 154
AoxI	GGCC	1 cut(s)	75
ApeKI	GCWGC	1 cut(s)	124
ApoI	RAATTY	1 cut(s)	206
AspS9I	GGNCC	1 cut(s)	75
AsuII	TTCGAA	1 cut(s)	41
BbvCI	CCTCAGC	1 cut(s)	71
BbvI	GCAGC	1 cut(s)	136
BisI	GCNGC	1 cut(s)	125
BlsI	GCNGC	1 cut(s)	126
BmgT120I	GGNCC	1 cut(s)	75
BmiI	GGNNCC	1 cut(s)	236
BmsI	GCATC	2 cut(s)	37, 166
Bpu10I	CCTNAGC	1 cut(s)	71
Bpu14I	TTCGAA	1 cut(s)	41
BsaJI	CCNNGG	1 cut(s)	57
Bsc4I	CCNNNNNNNGG	1 cut(s)	142
BseDI	CCNNGG	1 cut(s)	57
BseGI	GGATG	1 cut(s)	33
BseLI	CCNNNNNNNGG	1 cut(s)	142
BseMII	CTCAG	1 cut(s)	62
BseRI	GAGGAG	2 cut(s)	29, 80
BseXI	GCAGC	1 cut(s)	136
BshFI	GGCC	1 cut(s)	77
BsiSI	CCGG	1 cut(s)	90
BslI	CCNNNNNNNGG	1 cut(s)	142
BsnI	GGCC	1 cut(s)	77
Bsp119I	TTCGAA	1 cut(s)	41
Bsp143I	GATC	1 cut(s)	168
Bsp19I	CCATGG	1 cut(s)	57
BspACI	CCGC	1 cut(s)	149
BspANI	GGCC	1 cut(s)	77
BspCNI	CTCAG	1 cut(s)	63
BspLI	GGNNCC	1 cut(s)	236
BspQI	GCTCTTC	1 cut(s)	186
BspT104I	TTCGAA	1 cut(s)	41
BssECI	CCNNGG	1 cut(s)	57
BssMI	GATC	1 cut(s)	168
BssT1I	CCWWGG	1 cut(s)	57
Bst4CI	ACNGT	2 cut(s)	10, 251
Bst6I	CTCTTC	2 cut(s)	17, 186
BstBI	TTCGAA	1 cut(s)	41
BstC8I	GCNNGC	1 cut(s)	79
BstDEI	CTNAG	1 cut(s)	71
BstDSI	CCRYGG	1 cut(s)	57
BstENI	CCTNNNNNAGG	1 cut(s)	140
BstF5I	GGATG	1 cut(s)	33
BstKTI	GATC	1 cut(s)	171
BstMBI	GATC	1 cut(s)	168
BstV1I	GCAGC	1 cut(s)	136
BsuRI	GGCC	1 cut(s)	77
BtgI	CCRYGG	1 cut(s)	57
BtsCI	GGATG	1 cut(s)	33
Cac8I	GCNNGC	1 cut(s)	79
Cfr13I	GGNCC	1 cut(s)	75
CviAII	CATG	1 cut(s)	58
CviJI	RGCY	7 cut(s)	70, 77, 81, 105, 127, 154, 215
CviKI_1	RGCY	7 cut(s)	70, 77, 81, 105, 127, 154, 215
DdeI	CTNAG	1 cut(s)	71
DpnI	GATC	1 cut(s)	170
DpnII	GATC	1 cut(s)	168
Eam1104I	CTCTTC	2 cut(s)	17, 186
EarI	CTCTTC	2 cut(s)	17, 186
EciI	GGCGGA	1 cut(s)	164
Eco130I	CCWWGG	1 cut(s)	57
EcoNI	CCTNNNNNAGG	1 cut(s)	140
EcoT14I	CCWWGG	1 cut(s)	57
ErhI	CCWWGG	1 cut(s)	57
FaeI	CATG	1 cut(s)	61
FaiI	YATR	2 cut(s)	59, 84
FatI	CATG	1 cut(s)	57
Fnu4HI	GCNGC	1 cut(s)	125
FokI	GGATG	1 cut(s)	40
Fsp4HI	GCNGC	1 cut(s)	125
GluI	GCNGC	1 cut(s)	125
HaeIII	GGCC	1 cut(s)	77
HapII	CCGG	1 cut(s)	90
Hin1II	CATG	1 cut(s)	61
HincII	GTYRAC	1 cut(s)	54
HindII	GTYRAC	1 cut(s)	54
HinfI	GANTC	2 cut(s)	38, 119
HpaII	CCGG	1 cut(s)	90
Hpy166II	GTNNAC	1 cut(s)	54
Hpy188I	TCNGA	1 cut(s)	190
Hpy188III	TCNNGA	3 cut(s)	139, 158, 224
Hpy8I	GTNNAC	1 cut(s)	54
Hpy99I	CGWCG	2 cut(s)	10, 176
HpyAV	CCTTC	1 cut(s)	136
HpyCH4III	ACNGT	2 cut(s)	10, 251
HpyCH4IV	ACGT	1 cut(s)	219
HpyF3I	CTNAG	1 cut(s)	71
HpySE526I	ACGT	1 cut(s)	219
Hsp92II	CATG	1 cut(s)	61
Kzo9I	GATC	1 cut(s)	168
LguI	GCTCTTC	1 cut(s)	186
LmnI	GCTCC	3 cut(s)	16, 67, 151
LpnPI	CCDG	4 cut(s)	91, 103, 112, 216
Lsp1109I	GCAGC	1 cut(s)	136
LweI	GCATC	2 cut(s)	37, 166
MaeII	ACGT	1 cut(s)	219
MalI	GATC	1 cut(s)	170
MboI	GATC	1 cut(s)	168
MboII	GAAGA	2 cut(s)	34, 173
MluCI	AATT	2 cut(s)	85, 206
MlyI	GAGTC	1 cut(s)	128
MnlI	CCTC	9 cut(s)	7, 18, 58, 66, 108, 146, 203, 220, 248
MspA1I	CMGCKG	1 cut(s)	127
MspI	CCGG	1 cut(s)	90
NcoI	CCATGG	1 cut(s)	57
NdeII	GATC	1 cut(s)	168
NlaIII	CATG	1 cut(s)	61
NlaIV	GGNNCC	1 cut(s)	236
NspV	TTCGAA	1 cut(s)	41
PciSI	GCTCTTC	1 cut(s)	186
PcsI	WCGNNNNNNNCGW	1 cut(s)	47
PfeI	GAWTC	1 cut(s)	38
PkrI	GCNGC	1 cut(s)	126
PleI	GAGTC	1 cut(s)	127
PpsI	GAGTC	1 cut(s)	127
PspN4I	GGNNCC	1 cut(s)	236
PspPI	GGNCC	1 cut(s)	75
PvuII	CAGCTG	1 cut(s)	127
SapI	GCTCTTC	1 cut(s)	186
SatI	GCNGC	1 cut(s)	125
Sau3AI	GATC	1 cut(s)	168
Sau96I	GGNCC	1 cut(s)	75
SchI	GAGTC	1 cut(s)	128
SfaNI	GCATC	2 cut(s)	37, 166
SfuI	TTCGAA	1 cut(s)	41
Sse9I	AATT	2 cut(s)	85, 206
SsiI	CCGC	1 cut(s)	149
StyI	CCWWGG	1 cut(s)	57
TaaI	ACNGT	2 cut(s)	10, 251
TaiI	ACGT	1 cut(s)	222
TaqI	TCGA	2 cut(s)	41, 174
TaqII	GACCGA	1 cut(s)	174
TasI	AATT	2 cut(s)	85, 206
TfiI	GAWTC	1 cut(s)	38
TseI	GCWGC	1 cut(s)	124
XagI	CCTNNNNNAGG	1 cut(s)	140
XapI	RAATTY	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.