Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0013735

Physical Location & Seq

Genomic Coordinates Forward (+)

35704378 .. 35705502

Gene Structure 1125 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0204800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGTTCTTCAAGCGAAATGGTGGTTTATTATTAGAACAACAATTATCCTCAGGTGAAGTTAATGTCGAGAAAATTAAATTGTTCAAATCACAAGAGTTAAAGAAGTCTACCGATAATTTTAATGTGGATAGAATTCTTGGCCAAGGAGGTCAGGGTACTGTATACAAAGGTATGTTGGATGACGGGAGAATTGTTGCTGTGAAGAAGTCTAAAATAGTTGATGAAAGCCAACTTTCAGAATTCATCAATGAGGTTGTCATTCTTTCCCAAATTAACCATAGAAATGTGGTTCAACTATTGGGTTGTTGTTTAGAGACAGAAGTTCCTCTTTTGGTTTATGAATTTATACCAAATGGAACCCTTTCCAAGTATATTACAGAGCAGGTTGAAGACTTTCCACTCACATGGAAAATGCGCTTAAGAATTGCCACAGAAATTGCAGGAGCTCTCTCTTACTTACACTATGCAGCTTCCTTTCCAATTTATCATAGAGATATCAAGTCTACAAACATACTCTTAGATGGTAAATACAGAGCAAAAGTTGCTGACTTTGGAACTTCGAGATCAATTGCTATTGACCAGACTCACCTAACCACATCACTTGTACATGGCACATTCGAGGATGAAGGTAGAAGTCTTGCCGCATATTTCATTATTTCCATGCACAAAGATCGTCTATTTGAAATTGTTGATGCTCAAGTTTTGAAGGAAGGATCGAAAGCAGATATCATAATAGTCGCAAACCTTGCAAGAAGATGTCTGAATTTGTGTGGAAGGAATCGCCCTACAATGAGAGAGGTCACAGCTGAGCTAGAAGTGATTCAAATGACAGAAAAGACTTCTAATGCCCAACAAAACTATGAAGATGTTGAATTTGTCAAAACTGAATCAATCCAGCCATGGGATATTGCTTCAAGTTCAACAGAAACAAGATCAGCTTTGGATGTTGGTCAGGTTTCATCATTCCATGAAATCCCCCTATTATCTTTCAAGTCAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004028 GO:0004029 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005794 GO:0005911 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009269 GO:0009414 GO:0009415 GO:0009506 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0012505 GO:0016020 GO:0016491 GO:0016620 GO:0016903 GO:0030054 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0055044 GO:0055114 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldedh

Protein Analysis

333

Amino Acids

37.53

Weight (kDa)

6.04

Isoelectric Point (pI)

33.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	40 - 197	3.9e-31	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	42 - 195	1.2e-31	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013735)

Species	Orthologous Gene IDs
malus_domestica	MD00G1029200.v1.1
pyrus_communis	pycom08g13770
rosa_chinensis	RchiOBHm_Chr6g0296181
rosa_multiflora	Rmu_co8154236.1_g000001 Rmu_co8256199.1_g000001 Rmu_sc0007413.1_g000001 Rmu_sc0019544.1_g000004
rosa_roxburghii	Rroxscaffold_7G00171770 Rroxscaffold_7G00178280
rosa_rugosa	Rorug04G0204800 Rorug06G0259000 Rorug06G0259100
rosa_samantha	Rh4BG268200 Rh4CG279300 Rh5AG220000 Rh7AG088400
rosa_wichuraiana	Rw2G019540 Rw4G035980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	373
AccI	GTMKAC	3 cut(s)	107, 162, 503
AciI	CCGC	1 cut(s)	642
AclWI	GGATC	1 cut(s)	721
AcoI	YGGCCR	1 cut(s)	139
AcsI	RAATTY	5 cut(s)	132, 239, 341, 763, 872
AfaI	GTAC	2 cut(s)	157, 606
AfiI	CCNNNNNNNGG	1 cut(s)	901
AflII	CTTAAG	1 cut(s)	418
AluBI	AGCT	5 cut(s)	446, 470, 806, 811, 938
AluI	AGCT	5 cut(s)	446, 470, 806, 811, 938
Alw21I	GWGCWC	1 cut(s)	448
Alw26I	GTCTC	1 cut(s)	308
AlwI	GGATC	1 cut(s)	721
AoxI	GGCC	1 cut(s)	139
ApeKI	GCWGC	1 cut(s)	467
ApoI	RAATTY	5 cut(s)	132, 239, 341, 763, 872
Asp700I	GAANNNNTTC	3 cut(s)	361, 393, 819
AspLEI	GCGC	1 cut(s)	417
AsuHPI	GGTGA	2 cut(s)	65, 578
AxyI	CCTNAGG	1 cut(s)	49
BalI	TGGCCA	1 cut(s)	141
BanII	GRGCYC	1 cut(s)	448
BbsI	GAAGAC	1 cut(s)	396
Bbv12I	GWGCWC	1 cut(s)	448
BbvI	GCAGC	1 cut(s)	479
BccI	CCATC	1 cut(s)	515
BcgI	CGANNNNNNTGC	2 cut(s)	653, 687
BcoDI	GTCTC	1 cut(s)	308
BfaI	CTAG	1 cut(s)	812
BfrI	CTTAAG	1 cut(s)	418
BfuAI	ACCTGC	1 cut(s)	373
BisI	GCNGC	2 cut(s)	468, 642
BlpI	GCTNAGC	1 cut(s)	807
BlsI	GCNGC	2 cut(s)	469, 643
BmiI	GGNNCC	1 cut(s)	358
BmsI	GCATC	1 cut(s)	682
BpiI	GAAGAC	1 cut(s)	396
Bpu1102I	GCTNAGC	1 cut(s)	807
BpuEI	CTTGAG	1 cut(s)	681
BsaJI	CCNNGG	2 cut(s)	142, 899
Bsc4I	CCNNNNNNNGG	1 cut(s)	901
Bse21I	CCTNAGG	1 cut(s)	49
BseDI	CCNNGG	2 cut(s)	142, 899
BseGI	GGATG	3 cut(s)	184, 628, 949
BseLI	CCNNNNNNNGG	1 cut(s)	901
BseMII	CTCAG	2 cut(s)	63, 798
BseXI	GCAGC	1 cut(s)	479
BshFI	GGCC	1 cut(s)	141
BsiHKAI	GWGCWC	1 cut(s)	448
BslI	CCNNNNNNNGG	1 cut(s)	901
BsmAI	GTCTC	1 cut(s)	308
BsnI	GGCC	1 cut(s)	141
Bsp1286I	GDGCHC	1 cut(s)	448
Bsp1407I	TGTACA	1 cut(s)	604
Bsp143I	GATC	4 cut(s)	563, 670, 713, 932
Bsp1720I	GCTNAGC	1 cut(s)	807
Bsp19I	CCATGG	1 cut(s)	899
BspACI	CCGC	1 cut(s)	642
BspANI	GGCC	1 cut(s)	141
BspCNI	CTCAG	2 cut(s)	62, 799
BspLI	GGNNCC	1 cut(s)	358
BspMI	ACCTGC	1 cut(s)	373
BspPI	GGATC	1 cut(s)	721
BspTI	CTTAAG	1 cut(s)	418
BsrGI	TGTACA	1 cut(s)	604
BssECI	CCNNGG	2 cut(s)	142, 899
BssMI	GATC	4 cut(s)	563, 670, 713, 932
BssNAI	GTATAC	1 cut(s)	163
BssT1I	CCWWGG	2 cut(s)	142, 899
Bst1107I	GTATAC	1 cut(s)	163
Bst4CI	ACNGT	1 cut(s)	160
BstAFI	CTTAAG	1 cut(s)	418
BstAPI	GCANNNNNTGC	2 cut(s)	542, 746
BstAUI	TGTACA	1 cut(s)	604
BstDEI	CTNAG	3 cut(s)	49, 517, 807
BstDSI	CCRYGG	1 cut(s)	899
BstF5I	GGATG	3 cut(s)	184, 628, 949
BstHHI	GCGC	1 cut(s)	417
BstKTI	GATC	4 cut(s)	566, 673, 716, 935
BstMAI	GTCTC	1 cut(s)	308
BstMBI	GATC	4 cut(s)	563, 670, 713, 932
BstMWI	GCNNNNNNNGC	2 cut(s)	542, 746
BstV1I	GCAGC	1 cut(s)	479
BstV2I	GAAGAC	1 cut(s)	396
BstXI	CCANNNNNNTGG	1 cut(s)	405
BstZ17I	GTATAC	1 cut(s)	163
Bsu36I	CCTNAGG	1 cut(s)	49
BsuRI	GGCC	1 cut(s)	141
BtgI	CCRYGG	1 cut(s)	899
BtsCI	GGATG	3 cut(s)	184, 628, 949
BveI	ACCTGC	1 cut(s)	373
CfoI	GCGC	1 cut(s)	417
Csp6I	GTAC	2 cut(s)	156, 605
CspCI	CAANNNNNGTGG	4 cut(s)	418, 453, 583, 618
CviAII	CATG	5 cut(s)	405, 608, 661, 900, 968
CviJI	RGCY	8 cut(s)	141, 228, 446, 470, 806, 811, 898, 938
CviKI_1	RGCY	8 cut(s)	141, 228, 446, 470, 806, 811, 898, 938
CviQI	GTAC	2 cut(s)	156, 605
DdeI	CTNAG	3 cut(s)	49, 517, 807
DpnI	GATC	4 cut(s)	565, 672, 715, 934
DpnII	GATC	4 cut(s)	563, 670, 713, 932
EaeI	YGGCCR	1 cut(s)	139
Ecl136II	GAGCTC	1 cut(s)	446
Eco130I	CCWWGG	2 cut(s)	142, 899
Eco24I	GRGCYC	1 cut(s)	448
Eco32I	GATATC	2 cut(s)	496, 727
Eco53kI	GAGCTC	1 cut(s)	446
Eco81I	CCTNAGG	1 cut(s)	49
EcoICRI	GAGCTC	1 cut(s)	446
EcoRI	GAATTC	2 cut(s)	132, 239
EcoRV	GATATC	2 cut(s)	496, 727
EcoT14I	CCWWGG	2 cut(s)	142, 899
EcoT38I	GRGCYC	1 cut(s)	448
ErhI	CCWWGG	2 cut(s)	142, 899
FaeI	CATG	5 cut(s)	408, 611, 664, 903, 971
FalI	AAGNNNNNCTT	4 cut(s)	312, 344, 922, 954
FatI	CATG	5 cut(s)	404, 607, 660, 899, 967
FblI	GTMKAC	3 cut(s)	107, 162, 503
Fnu4HI	GCNGC	2 cut(s)	468, 642
FokI	GGATG	3 cut(s)	191, 635, 956
FriOI	GRGCYC	1 cut(s)	448
Fsp4HI	GCNGC	2 cut(s)	468, 642
FspBI	CTAG	1 cut(s)	812
GlaI	GCGC	1 cut(s)	416
GluI	GCNGC	2 cut(s)	468, 642
HaeIII	GGCC	1 cut(s)	141
HhaI	GCGC	1 cut(s)	417
Hin1II	CATG	5 cut(s)	408, 611, 664, 903, 971
Hin6I	GCGC	1 cut(s)	415
HinP1I	GCGC	1 cut(s)	415
HinfI	GANTC	4 cut(s)	583, 778, 820, 887
HphI	GGTGA	2 cut(s)	65, 578
Hpy166II	GTNNAC	3 cut(s)	108, 163, 504
Hpy188I	TCNGA	2 cut(s)	238, 762
Hpy188III	TCNNGA	2 cut(s)	67, 561
Hpy8I	GTNNAC	3 cut(s)	108, 163, 504
HpyAV	CCTTC	4 cut(s)	620, 700, 704, 768
HpyCH4III	ACNGT	1 cut(s)	160
HpyCH4V	TGCA	4 cut(s)	440, 467, 664, 749
HpyF10VI	GCNNNNNNNGC	2 cut(s)	542, 746
HpyF3I	CTNAG	3 cut(s)	49, 517, 807
Hsp92II	CATG	5 cut(s)	408, 611, 664, 903, 971
HspAI	GCGC	1 cut(s)	415
Kzo9I	GATC	4 cut(s)	563, 670, 713, 932
LmnI	GCTCC	1 cut(s)	443
LpnPI	CCDG	7 cut(s)	36, 137, 368, 426, 593, 908, 938
Lsp1109I	GCAGC	1 cut(s)	479
LweI	GCATC	1 cut(s)	682
MaeI	CTAG	1 cut(s)	812
MaeIII	GTNAC	1 cut(s)	799
MalI	GATC	4 cut(s)	565, 672, 715, 934
MboI	GATC	4 cut(s)	563, 670, 713, 932
MboII	GAAGA	4 cut(s)	214, 401, 765, 875
MfeI	CAATTG	1 cut(s)	567
MhlI	GDGCHC	1 cut(s)	448
MlsI	TGGCCA	1 cut(s)	141
MluNI	TGGCCA	1 cut(s)	141
MlyI	GAGTC	1 cut(s)	577
MmeI	TCCRAC	1 cut(s)	156
MnlI	CCTC	6 cut(s)	58, 140, 244, 336, 613, 790
Mox20I	TGGCCA	1 cut(s)	141
MroXI	GAANNNNTTC	3 cut(s)	361, 393, 819
MscI	TGGCCA	1 cut(s)	141
MseI	TTAA	6 cut(s)	60, 75, 98, 120, 273, 419
MslI	CAYNNNNRTG	2 cut(s)	282, 403
Msp20I	TGGCCA	1 cut(s)	141
MspA1I	CMGCKG	1 cut(s)	806
MspCI	CTTAAG	1 cut(s)	418
MunI	CAATTG	1 cut(s)	567
MwoI	GCNNNNNNNGC	2 cut(s)	542, 746
NcoI	CCATGG	1 cut(s)	899
NdeII	GATC	4 cut(s)	563, 670, 713, 932
NlaIII	CATG	5 cut(s)	408, 611, 664, 903, 971
NlaIV	GGNNCC	1 cut(s)	358
NmuCI	GTSAC	1 cut(s)	799
PdmI	GAANNNNTTC	3 cut(s)	361, 393, 819
PfeI	GAWTC	3 cut(s)	778, 820, 887
PkrI	GCNGC	2 cut(s)	469, 643
PleI	GAGTC	1 cut(s)	577
PpsI	GAGTC	1 cut(s)	577
Psp124BI	GAGCTC	1 cut(s)	448
PspN4I	GGNNCC	1 cut(s)	358
PvuII	CAGCTG	1 cut(s)	806
RsaI	GTAC	2 cut(s)	157, 606
RsaNI	GTAC	2 cut(s)	156, 605
RseI	CAYNNNNRTG	2 cut(s)	282, 403
SacI	GAGCTC	1 cut(s)	448
SaqAI	TTAA	6 cut(s)	60, 75, 98, 120, 273, 419
SatI	GCNGC	2 cut(s)	468, 642
Sau3AI	GATC	4 cut(s)	563, 670, 713, 932
SchI	GAGTC	1 cut(s)	577
SduI	GDGCHC	1 cut(s)	448
SfaNI	GCATC	1 cut(s)	682
SmiMI	CAYNNNNRTG	2 cut(s)	282, 403
SmlI	CTYRAG	2 cut(s)	418, 696
SmoI	CTYRAG	2 cut(s)	418, 696
SsiI	CCGC	1 cut(s)	642
SspMI	CTAG	1 cut(s)	812
SstI	GAGCTC	1 cut(s)	448
StyI	CCWWGG	2 cut(s)	142, 899
TaaI	ACNGT	1 cut(s)	160
TaqI	TCGA	4 cut(s)	66, 560, 618, 716
TatI	WGTACW	1 cut(s)	604
TauI	GCSGC	1 cut(s)	644
TfiI	GAWTC	3 cut(s)	778, 820, 887
Tru1I	TTAA	6 cut(s)	60, 75, 98, 120, 273, 419
Tru9I	TTAA	6 cut(s)	60, 75, 98, 120, 273, 419
TseFI	GTSAC	1 cut(s)	799
TseI	GCWGC	1 cut(s)	467
Tsp45I	GTSAC	1 cut(s)	799
TspDTI	ATGAA	8 cut(s)	232, 237, 354, 639, 640, 876, 948, 984
Vha464I	CTTAAG	1 cut(s)	418
XapI	RAATTY	5 cut(s)	132, 239, 341, 763, 872
XmiI	GTMKAC	3 cut(s)	107, 162, 503
XmnI	GAANNNNTTC	3 cut(s)	361, 393, 819
XspI	CTAG	1 cut(s)	812

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.