Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0013735

Physical Location & Seq

Genomic Coordinates Reverse (-)

25950442 .. 25952798

Gene Structure 2357 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G019540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGCCAAGGATTTTCCTGAGGCAGAGAGTTGAGGCTGGCTCAGGTGAATGTAGCTGTGGTGGAAAAGTTGTAAAGGGTATGTCTGTCAAGCCAACTAAAGGAGATGCTGTACTTTTCTGGAGCATGGGTCTGGATGGCCAATCAGATCCAAATAGCATACATGCAGGGTGCGAGATCCAAAGGTGCACTGGTGCTGTGGTGATAACAAGGGGCAAGTATCATCCACCAAATGCGTCAACTGATGGTGAAAAGCCATTATATCTTCATATTTCTGCAGGGGCTAATATAGGCATGTTGAAGAGCTCGTGTAAATTGGCAATCAAACAACTGAAGTCATGGATGAAGCCAGAGAAGGCTAAAACTTCAATAACCACTTTCCCTTCCTCAGCTGAAATAGTGTCTGAGCCTCTTGGTGTTGTTCTAATAATTTCAGCATGGAATTATCCTTTCTTTGTTGGAGCCATTGCAGCTAGTAATGCTGTAGTTCTAAAACCATCAGAACTTGCTCCTGCCACATCGTCATTGCTTGCAAAACTTTTAGGAGAGTATATGGATAGCTCTTCTGTGAGAGTTGTTGAGGGGGCTGTTGCTGAAACATCTGCACTACTGGAGCAGAAGTGGGACAAAATATGTTACACAGATCTCTTTCTGTATGATGTAGAGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004028 GO:0004029 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005794 GO:0005911 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009269 GO:0009414 GO:0009415 GO:0009506 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0012505 GO:0016020 GO:0016491 GO:0016620 GO:0016903 GO:0030054 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0055044 GO:0055114 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldedh

Protein Analysis

222

Amino Acids

23.79

Weight (kDa)

8.16

Isoelectric Point (pI)

43.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_12	PF23469	58 - 97	8.8e-13	KH-domain
Aldedh	PF00171	100 - 204	5.5e-14	Aldehyde dehydrogenase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0013735)

Species	Orthologous Gene IDs
malus_domestica	MD00G1029200.v1.1
pyrus_communis	pycom08g13770
rosa_chinensis	RchiOBHm_Chr6g0296181
rosa_multiflora	Rmu_co8154236.1_g000001 Rmu_co8256199.1_g000001 Rmu_sc0007413.1_g000001 Rmu_sc0019544.1_g000004
rosa_roxburghii	Rroxscaffold_7G00171770 Rroxscaffold_7G00178280
rosa_rugosa	Rorug04G0204800 Rorug06G0259000 Rorug06G0259100
rosa_samantha	Rh4BG268200 Rh4CG279300 Rh5AG220000 Rh7AG088400
rosa_wichuraiana	Rw2G019540 Rw4G035980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	140, 169
AcoI	YGGCCR	1 cut(s)	136
AcuI	CTGAAG	1 cut(s)	350
AfaI	GTAC	1 cut(s)	111
AfiI	CCNNNNNNNGG	1 cut(s)	98
AgsI	TTSAA	2 cut(s)	298, 366
AluBI	AGCT	5 cut(s)	54, 303, 389, 470, 558
AluI	AGCT	5 cut(s)	54, 303, 389, 470, 558
Alw21I	GWGCWC	2 cut(s)	188, 305
Alw44I	GTGCAC	1 cut(s)	184
AlwI	GGATC	2 cut(s)	140, 169
AoxI	GGCC	1 cut(s)	136
ApaLI	GTGCAC	1 cut(s)	184
ApeKI	GCWGC	1 cut(s)	467
AsuHPI	GGTGA	3 cut(s)	56, 211, 257
AxyI	CCTNAGG	1 cut(s)	17
BaeGI	GKGCMC	1 cut(s)	188
BalI	TGGCCA	1 cut(s)	138
BanII	GRGCYC	1 cut(s)	305
BauI	CACGAG	1 cut(s)	304
Bbv12I	GWGCWC	2 cut(s)	188, 305
BbvCI	CCTCAGC	1 cut(s)	385
BbvI	GCAGC	1 cut(s)	479
BccI	CCATC	3 cut(s)	128, 236, 502
BfaI	CTAG	1 cut(s)	471
BfmI	CTRYAG	2 cut(s)	273, 480
BglII	AGATCT	1 cut(s)	640
BisI	GCNGC	1 cut(s)	468
BlsI	GCNGC	1 cut(s)	469
BmiI	GGNNCC	1 cut(s)	460
BmsI	GCATC	1 cut(s)	94
BplI	GAGNNNNNCTC	2 cut(s)	23, 55
BpmI	CTGGAG	2 cut(s)	139, 629
Bpu10I	CCTNAGC	2 cut(s)	40, 385
BsaJI	CCNNGG	1 cut(s)	5
BsaXI	ACNNNNNCTCC	6 cut(s)	93, 112, 123, 142, 602, 632
Bsc4I	CCNNNNNNNGG	1 cut(s)	98
Bse1I	ACTGG	2 cut(s)	193, 612
Bse21I	CCTNAGG	1 cut(s)	17
Bse3DI	GCAATG	2 cut(s)	462, 521
BseDI	CCNNGG	1 cut(s)	5
BseGI	GGATG	3 cut(s)	139, 220, 345
BseLI	CCNNNNNNNGG	1 cut(s)	98
BseMI	GCAATG	2 cut(s)	462, 521
BseMII	CTCAG	4 cut(s)	8, 54, 393, 399
BseNI	ACTGG	2 cut(s)	193, 612
BseSI	GKGCMC	1 cut(s)	188
BseXI	GCAGC	1 cut(s)	479
BsgI	GTGCAG	1 cut(s)	585
BshFI	GGCC	1 cut(s)	138
BsiHKAI	GWGCWC	2 cut(s)	188, 305
BslFI	GGGAC	1 cut(s)	635
BslI	CCNNNNNNNGG	1 cut(s)	98
BsmFI	GGGAC	1 cut(s)	635
BsnI	GGCC	1 cut(s)	138
Bsp1286I	GDGCHC	2 cut(s)	188, 305
Bsp143I	GATC	3 cut(s)	145, 174, 640
BspANI	GGCC	1 cut(s)	138
BspCNI	CTCAG	4 cut(s)	9, 53, 394, 398
BspLI	GGNNCC	1 cut(s)	460
BspMAI	CTGCAG	1 cut(s)	277
BspPI	GGATC	2 cut(s)	140, 169
BspQI	GCTCTTC	2 cut(s)	293, 565
BsrDI	GCAATG	2 cut(s)	462, 521
BsrI	ACTGG	2 cut(s)	193, 612
BssECI	CCNNGG	1 cut(s)	5
BssMI	GATC	3 cut(s)	145, 174, 640
BssSI	CACGAG	1 cut(s)	304
BssT1I	CCWWGG	1 cut(s)	5
Bst2BI	CACGAG	1 cut(s)	304
Bst6I	CTCTTC	2 cut(s)	293, 565
BstC8I	GCNNGC	2 cut(s)	37, 528
BstDEI	CTNAG	4 cut(s)	17, 40, 385, 402
BstF5I	GGATG	3 cut(s)	139, 220, 345
BstKTI	GATC	3 cut(s)	148, 177, 643
BstMBI	GATC	3 cut(s)	145, 174, 640
BstMWI	GCNNNNNNNGC	2 cut(s)	467, 476
BstNSI	RCATGY	2 cut(s)	164, 295
BstSFI	CTRYAG	2 cut(s)	273, 480
BstSLI	GKGCMC	1 cut(s)	188
BstV1I	GCAGC	1 cut(s)	479
BstX2I	RGATCY	3 cut(s)	145, 174, 640
BstYI	RGATCY	3 cut(s)	145, 174, 640
Bsu36I	CCTNAGG	1 cut(s)	17
BsuRI	GGCC	1 cut(s)	138
BtsCI	GGATG	3 cut(s)	139, 220, 345
BtsIMutI	CAGTG	1 cut(s)	186
Cac8I	GCNNGC	2 cut(s)	37, 528
CseI	GACGC	1 cut(s)	222
Csp6I	GTAC	1 cut(s)	110
CviAII	CATG	5 cut(s)	124, 161, 292, 336, 435
CviQI	GTAC	1 cut(s)	110
DdeI	CTNAG	4 cut(s)	17, 40, 385, 402
DpnI	GATC	3 cut(s)	147, 176, 642
DpnII	GATC	3 cut(s)	145, 174, 640
EaeI	YGGCCR	1 cut(s)	136
Eam1104I	CTCTTC	2 cut(s)	293, 565
EarI	CTCTTC	2 cut(s)	293, 565
Ecl136II	GAGCTC	1 cut(s)	303
Eco130I	CCWWGG	1 cut(s)	5
Eco24I	GRGCYC	1 cut(s)	305
Eco53kI	GAGCTC	1 cut(s)	303
Eco57I	CTGAAG	1 cut(s)	350
Eco81I	CCTNAGG	1 cut(s)	17
EcoICRI	GAGCTC	1 cut(s)	303
EcoT14I	CCWWGG	1 cut(s)	5
EcoT38I	GRGCYC	1 cut(s)	305
ErhI	CCWWGG	1 cut(s)	5
FaeI	CATG	5 cut(s)	127, 164, 295, 339, 438
FaqI	GGGAC	1 cut(s)	635
FatI	CATG	5 cut(s)	123, 160, 291, 335, 434
Fnu4HI	GCNGC	1 cut(s)	468
FokI	GGATG	3 cut(s)	146, 207, 352
FriOI	GRGCYC	1 cut(s)	305
Fsp4HI	GCNGC	1 cut(s)	468
FspBI	CTAG	1 cut(s)	471
GluI	GCNGC	1 cut(s)	468
GsuI	CTGGAG	2 cut(s)	139, 629
HaeIII	GGCC	1 cut(s)	138
HgaI	GACGC	1 cut(s)	222
Hin1II	CATG	5 cut(s)	127, 164, 295, 339, 438
HincII	GTYRAC	1 cut(s)	237
HindII	GTYRAC	1 cut(s)	237
HphI	GGTGA	3 cut(s)	56, 211, 257
Hpy166II	GTNNAC	2 cut(s)	186, 237
Hpy188I	TCNGA	3 cut(s)	145, 403, 499
Hpy188III	TCNNGA	3 cut(s)	16, 118, 131
Hpy8I	GTNNAC	2 cut(s)	186, 237
HpyAV	CCTTC	2 cut(s)	346, 390
HpyCH4V	TGCA	6 cut(s)	164, 186, 275, 467, 530, 602
HpyF10VI	GCNNNNNNNGC	2 cut(s)	467, 476
HpyF3I	CTNAG	4 cut(s)	17, 40, 385, 402
Hsp92II	CATG	5 cut(s)	127, 164, 295, 339, 438
Kzo9I	GATC	3 cut(s)	145, 174, 640
LguI	GCTCTTC	2 cut(s)	293, 565
LmnI	GCTCC	4 cut(s)	120, 458, 511, 610
Lsp1109I	GCAGC	1 cut(s)	479
LweI	GCATC	1 cut(s)	94
MaeI	CTAG	1 cut(s)	471
MaeIII	GTNAC	1 cut(s)	632
MalI	GATC	3 cut(s)	147, 176, 642
MboI	GATC	3 cut(s)	145, 174, 640
MboII	GAAGA	3 cut(s)	254, 310, 552
MflI	RGATCY	3 cut(s)	145, 174, 640
MhlI	GDGCHC	2 cut(s)	188, 305
MlsI	TGGCCA	1 cut(s)	138
MluCI	AATT	3 cut(s)	311, 426, 439
MluNI	TGGCCA	1 cut(s)	138
MmeI	TCCRAC	1 cut(s)	436
MnlI	CCTC	5 cut(s)	12, 25, 394, 417, 571
Mox20I	TGGCCA	1 cut(s)	138
MscI	TGGCCA	1 cut(s)	138
Msp20I	TGGCCA	1 cut(s)	138
MspA1I	CMGCKG	1 cut(s)	389
MwoI	GCNNNNNNNGC	2 cut(s)	467, 476
NdeII	GATC	3 cut(s)	145, 174, 640
NlaIII	CATG	5 cut(s)	127, 164, 295, 339, 438
NlaIV	GGNNCC	1 cut(s)	460
NspI	RCATGY	2 cut(s)	164, 295
PciSI	GCTCTTC	2 cut(s)	293, 565
PkrI	GCNGC	1 cut(s)	469
Psp124BI	GAGCTC	1 cut(s)	305
PspN4I	GGNNCC	1 cut(s)	460
PstI	CTGCAG	1 cut(s)	277
PsuI	RGATCY	3 cut(s)	145, 174, 640
PvuII	CAGCTG	1 cut(s)	389
RsaI	GTAC	1 cut(s)	111
RsaNI	GTAC	1 cut(s)	110
SacI	GAGCTC	1 cut(s)	305
SapI	GCTCTTC	2 cut(s)	293, 565
SatI	GCNGC	1 cut(s)	468
Sau3AI	GATC	3 cut(s)	145, 174, 640
SduI	GDGCHC	2 cut(s)	188, 305
SetI	ASST	7 cut(s)	46, 56, 185, 305, 391, 472, 560
SfaNI	GCATC	1 cut(s)	94
SfcI	CTRYAG	2 cut(s)	273, 480
Sse9I	AATT	3 cut(s)	311, 426, 439
SspMI	CTAG	1 cut(s)	471
SstI	GAGCTC	1 cut(s)	305
StyI	CCWWGG	1 cut(s)	5
TasI	AATT	3 cut(s)	311, 426, 439
TatI	WGTACW	1 cut(s)	109
TscAI	CASTG	1 cut(s)	193
TseI	GCWGC	1 cut(s)	467
TspDTI	ATGAA	2 cut(s)	254, 356
TspRI	CASTG	1 cut(s)	193
VneI	GTGCAC	1 cut(s)	184
XceI	RCATGY	2 cut(s)	164, 295
XcmI	CCANNNNNNNNNTGG	1 cut(s)	185
XspI	CTAG	1 cut(s)	471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.