Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0013735

Physical Location & Seq

Genomic Coordinates Reverse (-)

6726043 .. 6729835

Gene Structure 3793 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG088400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGTCTTGGGCTGGCTCAGGTGAATGTAGCTGTGGTGGAAAAGTTGTAAAGGGTATGTCTGTCAAGCCAACTAAAGGAGATGCTGTACTTTTCTGGAGCATGGGTCTGGATGGCCAATCAGATCCAAATAGCATACATGCAGGGTGCGAGGTGCTAGCTGGGGAAAAGTGGTCAGCCACAAAATGGATGAGAACCACAATTATTACTGAAGTACCATTGGAACTGGAGGAGGTATGCAGACAGTCTCCTCCAGGTTTAAGTTCTTCTATTCAGTACAAGCTGACAAAACGCCAAGCACAGGAGGAGATCCAAAGGTGCACTGGTGCTGTGGTGATAACAAGGGGCAAGTATCATCCACCAAATGCGTCAACTGATGGTGAAAAGCCATTATATCTTCATATTTCTGCAGGGGCTAATATAGGCATGTTGAAGAGCTCGTGTAAATTGGCAATCAAACAACTGAAGTCATGGATGAAGCCAGAGAAGGCTAAAACTTCAATAACCACTTTCCCTTCCTCAGCTGAAATAGTGTCTGAGCCTCTTGGTGTTGTTCTAATAATTTCAGCATGGAATTATCCTTTCTTGTTGTCCCTTGATCCAGTTGTTGGAGCCATTGCAGCTAGTAATGCTGTAGTTCTAAAACCATCAGAACTTGCTCCTGCCACATCGTCATTGCTTGCAAAACTTTTAGGAGAGTATATGGATAGCTCTTCTGTGAGAGTTGTTGAGGGGGCTGTTGCTGAAACATCTGCACTACTGGAGCAGAAGTGGGACAAAATATGTTACACAGATTTCCTCTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004028 GO:0004029 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005794 GO:0005911 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009269 GO:0009414 GO:0009415 GO:0009506 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0012505 GO:0016020 GO:0016491 GO:0016620 GO:0016903 GO:0030054 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0055044 GO:0055114 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldedh

Protein Analysis

267

Amino Acids

28.71

Weight (kDa)

7.53

Isoelectric Point (pI)

47.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_12	PF23469	88 - 141	1.1e-19	KH-domain
Aldedh	PF00171	144 - 254	2.1e-18	Aldehyde dehydrogenase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0013735)

Species	Orthologous Gene IDs
malus_domestica	MD00G1029200.v1.1
pyrus_communis	pycom08g13770
rosa_chinensis	RchiOBHm_Chr6g0296181
rosa_multiflora	Rmu_co8154236.1_g000001 Rmu_co8256199.1_g000001 Rmu_sc0007413.1_g000001 Rmu_sc0019544.1_g000004
rosa_roxburghii	Rroxscaffold_7G00171770 Rroxscaffold_7G00178280
rosa_rugosa	Rorug04G0204800 Rorug06G0259000 Rorug06G0259100
rosa_samantha	Rh4BG268200 Rh4CG279300 Rh5AG220000 Rh7AG088400
rosa_wichuraiana	Rw2G019540 Rw4G035980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	183, 605
AclWI	GGATC	3 cut(s)	116, 301, 590
AcoI	YGGCCR	1 cut(s)	112
AcuI	CTGAAG	2 cut(s)	228, 482
AfaI	GTAC	3 cut(s)	87, 213, 275
AfiI	CCNNNNNNNGG	4 cut(s)	74, 183, 298, 605
AgsI	TTSAA	2 cut(s)	430, 498
AjnI	CCWGG	1 cut(s)	250
AluBI	AGCT	7 cut(s)	30, 158, 280, 435, 521, 620, 708
AluI	AGCT	7 cut(s)	30, 158, 280, 435, 521, 620, 708
Alw21I	GWGCWC	2 cut(s)	320, 437
Alw26I	GTCTC	1 cut(s)	249
Alw44I	GTGCAC	1 cut(s)	316
AlwI	GGATC	3 cut(s)	116, 301, 590
AoxI	GGCC	1 cut(s)	112
ApaLI	GTGCAC	1 cut(s)	316
ApeKI	GCWGC	1 cut(s)	617
AsuHPI	GGTGA	3 cut(s)	32, 343, 389
AsuNHI	GCTAGC	1 cut(s)	154
BaeGI	GKGCMC	1 cut(s)	320
BaeI	ACNNNNGTAYC	2 cut(s)	195, 228
BalI	TGGCCA	1 cut(s)	114
BanII	GRGCYC	1 cut(s)	437
BauI	CACGAG	1 cut(s)	436
Bbv12I	GWGCWC	2 cut(s)	320, 437
BbvCI	CCTCAGC	1 cut(s)	517
BbvI	GCAGC	1 cut(s)	629
BccI	CCATC	3 cut(s)	104, 368, 652
BciT130I	CCWGG	1 cut(s)	252
BcoDI	GTCTC	1 cut(s)	249
BfaI	CTAG	3 cut(s)	155, 621, 802
BfmI	CTRYAG	2 cut(s)	405, 630
BisI	GCNGC	1 cut(s)	618
BlsI	GCNGC	1 cut(s)	619
Bme1390I	CCNGG	1 cut(s)	252
BmiI	GGNNCC	1 cut(s)	610
BmrFI	CCNGG	1 cut(s)	252
BmsI	GCATC	1 cut(s)	70
BmtI	GCTAGC	1 cut(s)	158
BpmI	CTGGAG	4 cut(s)	115, 234, 245, 779
Bpu10I	CCTNAGC	2 cut(s)	16, 517
BsaXI	ACNNNNNCTCC	6 cut(s)	69, 88, 99, 118, 752, 782
Bsc4I	CCNNNNNNNGG	4 cut(s)	74, 183, 298, 605
Bse1I	ACTGG	4 cut(s)	228, 325, 599, 762
Bse3DI	GCAATG	2 cut(s)	612, 671
BseBI	CCWGG	1 cut(s)	252
BseGI	GGATG	4 cut(s)	115, 192, 352, 477
BseLI	CCNNNNNNNGG	4 cut(s)	74, 183, 298, 605
BseMI	GCAATG	2 cut(s)	612, 671
BseMII	CTCAG	3 cut(s)	30, 525, 531
BseNI	ACTGG	4 cut(s)	228, 325, 599, 762
BseRI	GAGGAG	3 cut(s)	237, 242, 317
BseSI	GKGCMC	1 cut(s)	320
BseXI	GCAGC	1 cut(s)	629
BseYI	CCCAGC	1 cut(s)	158
BsgI	GTGCAG	1 cut(s)	735
BshFI	GGCC	1 cut(s)	114
BsiHKAI	GWGCWC	2 cut(s)	320, 437
BslFI	GGGAC	2 cut(s)	574, 785
BslI	CCNNNNNNNGG	4 cut(s)	74, 183, 298, 605
BsmAI	GTCTC	1 cut(s)	249
BsmFI	GGGAC	2 cut(s)	574, 785
BsnI	GGCC	1 cut(s)	114
Bsp1286I	GDGCHC	2 cut(s)	320, 437
Bsp143I	GATC	3 cut(s)	121, 306, 595
BspANI	GGCC	1 cut(s)	114
BspCNI	CTCAG	3 cut(s)	29, 526, 530
BspLI	GGNNCC	1 cut(s)	610
BspMAI	CTGCAG	1 cut(s)	409
BspOI	GCTAGC	1 cut(s)	158
BspPI	GGATC	3 cut(s)	116, 301, 590
BspQI	GCTCTTC	2 cut(s)	425, 715
BsrDI	GCAATG	2 cut(s)	612, 671
BsrI	ACTGG	4 cut(s)	228, 325, 599, 762
BssMI	GATC	3 cut(s)	121, 306, 595
BssSI	CACGAG	1 cut(s)	436
Bst2BI	CACGAG	1 cut(s)	436
Bst2UI	CCWGG	1 cut(s)	252
Bst4CI	ACNGT	1 cut(s)	243
Bst6I	CTCTTC	2 cut(s)	425, 715
BstC8I	GCNNGC	3 cut(s)	13, 156, 678
BstDEI	CTNAG	3 cut(s)	16, 517, 534
BstF5I	GGATG	4 cut(s)	115, 192, 352, 477
BstKTI	GATC	3 cut(s)	124, 309, 598
BstMAI	GTCTC	1 cut(s)	249
BstMBI	GATC	3 cut(s)	121, 306, 595
BstMWI	GCNNNNNNNGC	2 cut(s)	617, 626
BstNI	CCWGG	1 cut(s)	252
BstNSI	RCATGY	2 cut(s)	140, 427
BstSCI	CCNGG	1 cut(s)	250
BstSFI	CTRYAG	2 cut(s)	405, 630
BstSLI	GKGCMC	1 cut(s)	320
BstV1I	GCAGC	1 cut(s)	629
BstX2I	RGATCY	2 cut(s)	121, 306
BstYI	RGATCY	2 cut(s)	121, 306
BsuRI	GGCC	1 cut(s)	114
BtsCI	GGATG	4 cut(s)	115, 192, 352, 477
BtsIMutI	CAGTG	1 cut(s)	318
Cac8I	GCNNGC	3 cut(s)	13, 156, 678
CseI	GACGC	1 cut(s)	354
Csp6I	GTAC	3 cut(s)	86, 212, 274
CviAII	CATG	5 cut(s)	100, 137, 424, 468, 567
CviQI	GTAC	3 cut(s)	86, 212, 274
DdeI	CTNAG	3 cut(s)	16, 517, 534
DpnI	GATC	3 cut(s)	123, 308, 597
DpnII	GATC	3 cut(s)	121, 306, 595
EaeI	YGGCCR	1 cut(s)	112
Eam1104I	CTCTTC	2 cut(s)	425, 715
EarI	CTCTTC	2 cut(s)	425, 715
Ecl136II	GAGCTC	1 cut(s)	435
Eco24I	GRGCYC	1 cut(s)	437
Eco53kI	GAGCTC	1 cut(s)	435
Eco57I	CTGAAG	2 cut(s)	228, 482
EcoICRI	GAGCTC	1 cut(s)	435
EcoRII	CCWGG	1 cut(s)	250
EcoT38I	GRGCYC	1 cut(s)	437
FaeI	CATG	5 cut(s)	103, 140, 427, 471, 570
FaqI	GGGAC	2 cut(s)	574, 785
FatI	CATG	5 cut(s)	99, 136, 423, 467, 566
Fnu4HI	GCNGC	1 cut(s)	618
FokI	GGATG	4 cut(s)	122, 199, 339, 484
FriOI	GRGCYC	1 cut(s)	437
Fsp4HI	GCNGC	1 cut(s)	618
FspBI	CTAG	3 cut(s)	155, 621, 802
GluI	GCNGC	1 cut(s)	618
GsaI	CCCAGC	1 cut(s)	162
GsuI	CTGGAG	4 cut(s)	115, 234, 245, 779
HaeIII	GGCC	1 cut(s)	114
HgaI	GACGC	1 cut(s)	354
Hin1II	CATG	5 cut(s)	103, 140, 427, 471, 570
HincII	GTYRAC	1 cut(s)	369
HindII	GTYRAC	1 cut(s)	369
HphI	GGTGA	3 cut(s)	32, 343, 389
Hpy166II	GTNNAC	2 cut(s)	318, 369
Hpy188I	TCNGA	3 cut(s)	121, 535, 649
Hpy188III	TCNNGA	2 cut(s)	94, 107
Hpy8I	GTNNAC	2 cut(s)	318, 369
HpyAV	CCTTC	2 cut(s)	478, 522
HpyCH4III	ACNGT	1 cut(s)	243
HpyCH4V	TGCA	7 cut(s)	140, 237, 318, 407, 617, 680, 752
HpyF10VI	GCNNNNNNNGC	2 cut(s)	617, 626
HpyF3I	CTNAG	3 cut(s)	16, 517, 534
Hsp92II	CATG	5 cut(s)	103, 140, 427, 471, 570
Kzo9I	GATC	3 cut(s)	121, 306, 595
LguI	GCTCTTC	2 cut(s)	425, 715
LmnI	GCTCC	4 cut(s)	96, 608, 661, 760
Lsp1109I	GCAGC	1 cut(s)	629
LweI	GCATC	1 cut(s)	70
MaeI	CTAG	3 cut(s)	155, 621, 802
MaeIII	GTNAC	1 cut(s)	782
MalI	GATC	3 cut(s)	123, 308, 597
MboI	GATC	3 cut(s)	121, 306, 595
MboII	GAAGA	4 cut(s)	255, 386, 442, 702
MflI	RGATCY	2 cut(s)	121, 306
MhlI	GDGCHC	2 cut(s)	320, 437
MlsI	TGGCCA	1 cut(s)	114
MluCI	AATT	4 cut(s)	198, 443, 558, 571
MluNI	TGGCCA	1 cut(s)	114
MmeI	TCCRAC	1 cut(s)	586
MnlI	CCTC	8 cut(s)	142, 220, 223, 258, 295, 526, 549, 721
Mox20I	TGGCCA	1 cut(s)	114
MscI	TGGCCA	1 cut(s)	114
MseI	TTAA	1 cut(s)	257
Msp20I	TGGCCA	1 cut(s)	114
MspA1I	CMGCKG	1 cut(s)	521
MspR9I	CCNGG	1 cut(s)	252
MvaI	CCWGG	1 cut(s)	252
MwoI	GCNNNNNNNGC	2 cut(s)	617, 626
NdeII	GATC	3 cut(s)	121, 306, 595
NheI	GCTAGC	1 cut(s)	154
NlaIII	CATG	5 cut(s)	103, 140, 427, 471, 570
NlaIV	GGNNCC	1 cut(s)	610
NspI	RCATGY	2 cut(s)	140, 427
PciSI	GCTCTTC	2 cut(s)	425, 715
PflMI	CCANNNNNTGG	2 cut(s)	183, 605
PkrI	GCNGC	1 cut(s)	619
Psp124BI	GAGCTC	1 cut(s)	437
Psp6I	CCWGG	1 cut(s)	250
PspFI	CCCAGC	1 cut(s)	158
PspGI	CCWGG	1 cut(s)	250
PspN4I	GGNNCC	1 cut(s)	610
PstI	CTGCAG	1 cut(s)	409
PsuI	RGATCY	2 cut(s)	121, 306
PvuII	CAGCTG	1 cut(s)	521
RsaI	GTAC	3 cut(s)	87, 213, 275
RsaNI	GTAC	3 cut(s)	86, 212, 274
SacI	GAGCTC	1 cut(s)	437
SapI	GCTCTTC	2 cut(s)	425, 715
SaqAI	TTAA	1 cut(s)	257
SatI	GCNGC	1 cut(s)	618
Sau3AI	GATC	3 cut(s)	121, 306, 595
ScrFI	CCNGG	1 cut(s)	252
SduI	GDGCHC	2 cut(s)	320, 437
SfaNI	GCATC	1 cut(s)	70
SfcI	CTRYAG	2 cut(s)	405, 630
Sse9I	AATT	4 cut(s)	198, 443, 558, 571
SspMI	CTAG	3 cut(s)	155, 621, 802
SstI	GAGCTC	1 cut(s)	437
StyD4I	CCNGG	1 cut(s)	250
TaaI	ACNGT	1 cut(s)	243
TasI	AATT	4 cut(s)	198, 443, 558, 571
TatI	WGTACW	2 cut(s)	85, 273
Tru1I	TTAA	1 cut(s)	257
Tru9I	TTAA	1 cut(s)	257
TscAI	CASTG	1 cut(s)	325
TseI	GCWGC	1 cut(s)	617
TspDTI	ATGAA	2 cut(s)	386, 488
TspRI	CASTG	1 cut(s)	325
Van91I	CCANNNNNTGG	2 cut(s)	183, 605
VneI	GTGCAC	1 cut(s)	316
XceI	RCATGY	2 cut(s)	140, 427
XcmI	CCANNNNNNNNNTGG	1 cut(s)	317
XspI	CTAG	3 cut(s)	155, 621, 802

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.