Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0013735

Physical Location & Seq

Genomic Coordinates Forward (+)

18011891 .. 18012358

Gene Structure 468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00178280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGCGACGAAGGAGTTGCAGAGCGTAGCGTTCGGTTCAAAAGAGGCGGCGGCTATGGTGAAGGAGCTGAGGGAAAGTTATGGCTCCGGTAAGACCAGAAGCTACGAGTGGAGAGTGTCGCAACTGAAGAACATTGAGAAAATTACAGAGTATCATGAACAGGAAATCATTGAGGCTCTTCGCTCCGACCTCTCCAAACCCGAATTCGAATCCTACATTCAAGAGATAGCGCTATTGAAGAACTCGTGTACATTGGCACTTAAAGAACTCAAGTCTTGGATGAAGCCTGAAAAGGTATATTTGCTTGAAATGCATTCCTTTGAGTTTACCTCAAGATCTACATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004028 GO:0004029 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005794 GO:0005911 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009269 GO:0009414 GO:0009415 GO:0009506 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0012505 GO:0016020 GO:0016491 GO:0016620 GO:0016903 GO:0030054 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0055044 GO:0055114 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldedh

Protein Analysis

115

Amino Acids

13.35

Weight (kDa)

6.16

Isoelectric Point (pI)

67.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013735)

Species	Orthologous Gene IDs
malus_domestica	MD00G1029200.v1.1
pyrus_communis	pycom08g13770
rosa_chinensis	RchiOBHm_Chr6g0296181
rosa_multiflora	Rmu_co8154236.1_g000001 Rmu_co8256199.1_g000001 Rmu_sc0007413.1_g000001 Rmu_sc0019544.1_g000004
rosa_roxburghii	Rroxscaffold_7G00171770 Rroxscaffold_7G00178280
rosa_rugosa	Rorug04G0204800 Rorug06G0259000 Rorug06G0259100
rosa_samantha	Rh4BG268200 Rh4CG279300 Rh5AG220000 Rh7AG088400
rosa_wichuraiana	Rw2G019540 Rw4G035980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	47, 50
AcsI	RAATTY	1 cut(s)	203
AcuI	CTGAAG	1 cut(s)	146
AfaI	GTAC	1 cut(s)	250
AfeI	AGCGCT	1 cut(s)	231
AgsI	TTSAA	4 cut(s)	39, 221, 238, 308
AjuI	GAANNNNNNNTTGG	2 cut(s)	188, 220
AluBI	AGCT	2 cut(s)	67, 102
AluI	AGCT	2 cut(s)	67, 102
Aor51HI	AGCGCT	1 cut(s)	231
ApoI	RAATTY	1 cut(s)	203
AspLEI	GCGC	1 cut(s)	232
AsuHPI	GGTGA	1 cut(s)	70
AsuII	TTCGAA	1 cut(s)	207
BauI	CACGAG	1 cut(s)	244
BbvCI	CCTCAGC	1 cut(s)	68
BcgI	CGANNNNNNTGC	1 cut(s)	32
BfoI	RGCGCY	1 cut(s)	233
BglII	AGATCT	1 cut(s)	335
BisI	GCNGC	2 cut(s)	48, 51
BlsI	GCNGC	2 cut(s)	49, 52
BmiI	GGNNCC	1 cut(s)	85
BplI	GAGNNNNNCTC	2 cut(s)	314, 346
Bpu10I	CCTNAGC	1 cut(s)	68
Bpu14I	TTCGAA	1 cut(s)	207
BpuEI	CTTGAG	2 cut(s)	254, 316
BsaBI	GATNNNNATC	1 cut(s)	340
BsaWI	WCCGGW	1 cut(s)	86
Bse8I	GATNNNNATC	1 cut(s)	340
BseGI	GGATG	1 cut(s)	285
BseJI	GATNNNNATC	1 cut(s)	340
BseMII	CTCAG	1 cut(s)	59
BsiSI	CCGG	1 cut(s)	87
BsmI	GAATGC	1 cut(s)	313
Bsp119I	TTCGAA	1 cut(s)	207
Bsp1407I	TGTACA	1 cut(s)	248
Bsp143I	GATC	1 cut(s)	335
BspACI	CCGC	2 cut(s)	47, 50
BspCNI	CTCAG	1 cut(s)	60
BspHI	TCATGA	2 cut(s)	154, 344
BspLI	GGNNCC	1 cut(s)	85
BspQI	GCTCTTC	1 cut(s)	183
BspT104I	TTCGAA	1 cut(s)	207
BsrGI	TGTACA	1 cut(s)	248
BssMI	GATC	1 cut(s)	335
BssSI	CACGAG	1 cut(s)	244
Bst2BI	CACGAG	1 cut(s)	244
Bst6I	CTCTTC	1 cut(s)	183
BstAUI	TGTACA	1 cut(s)	248
BstBI	TTCGAA	1 cut(s)	207
BstDEI	CTNAG	1 cut(s)	68
BstF5I	GGATG	1 cut(s)	285
BstH2I	RGCGCY	1 cut(s)	233
BstHHI	GCGC	1 cut(s)	232
BstKTI	GATC	1 cut(s)	338
BstMBI	GATC	1 cut(s)	335
BstMWI	GCNNNNNNNGC	1 cut(s)	310
BstX2I	RGATCY	1 cut(s)	335
BstYI	RGATCY	1 cut(s)	335
BtsCI	GGATG	1 cut(s)	285
CciI	TCATGA	2 cut(s)	154, 344
CfoI	GCGC	1 cut(s)	232
Csp6I	GTAC	1 cut(s)	249
CviAII	CATG	2 cut(s)	155, 345
CviJI	RGCY	6 cut(s)	53, 67, 84, 102, 176, 286
CviKI_1	RGCY	6 cut(s)	53, 67, 84, 102, 176, 286
CviQI	GTAC	1 cut(s)	249
DdeI	CTNAG	1 cut(s)	68
DpnI	GATC	1 cut(s)	337
DpnII	GATC	1 cut(s)	335
Eam1104I	CTCTTC	1 cut(s)	183
EarI	CTCTTC	1 cut(s)	183
Eco47III	AGCGCT	1 cut(s)	231
Eco57I	CTGAAG	1 cut(s)	146
EcoRI	GAATTC	1 cut(s)	203
EcoT22I	ATGCAT	1 cut(s)	315
FaeI	CATG	2 cut(s)	158, 348
FaiI	YATR	5 cut(s)	56, 81, 156, 298, 346
FatI	CATG	2 cut(s)	154, 344
Fnu4HI	GCNGC	2 cut(s)	48, 51
FokI	GGATG	1 cut(s)	292
Fsp4HI	GCNGC	2 cut(s)	48, 51
GlaI	GCGC	1 cut(s)	231
GluI	GCNGC	2 cut(s)	48, 51
HaeII	RGCGCY	1 cut(s)	233
HapII	CCGG	1 cut(s)	87
HhaI	GCGC	1 cut(s)	232
Hin1II	CATG	2 cut(s)	158, 348
Hin6I	GCGC	1 cut(s)	230
HinP1I	GCGC	1 cut(s)	230
HinfI	GANTC	1 cut(s)	209
HpaII	CCGG	1 cut(s)	87
HphI	GGTGA	1 cut(s)	70
Hpy166II	GTNNAC	2 cut(s)	249, 327
Hpy188I	TCNGA	1 cut(s)	187
Hpy188III	TCNNGA	4 cut(s)	155, 221, 333, 345
Hpy8I	GTNNAC	2 cut(s)	249, 327
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	2 cut(s)	4, 55
HpyCH4V	TGCA	2 cut(s)	19, 313
HpyF10VI	GCNNNNNNNGC	1 cut(s)	310
HpyF3I	CTNAG	1 cut(s)	68
Hsp92II	CATG	2 cut(s)	158, 348
HspAI	GCGC	1 cut(s)	230
Kzo9I	GATC	1 cut(s)	335
LguI	GCTCTTC	1 cut(s)	183
LmnI	GCTCC	3 cut(s)	64, 89, 188
LpnPI	CCDG	4 cut(s)	100, 109, 146, 300
MalI	GATC	1 cut(s)	337
MboI	GATC	1 cut(s)	335
MboII	GAAGA	3 cut(s)	139, 170, 250
MflI	RGATCY	1 cut(s)	335
MluCI	AATT	2 cut(s)	141, 203
MmeI	TCCRAC	1 cut(s)	210
MnlI	CCTC	5 cut(s)	37, 63, 166, 200, 340
Mph1103I	ATGCAT	1 cut(s)	315
MseI	TTAA	1 cut(s)	261
MspI	CCGG	1 cut(s)	87
Mva1269I	GAATGC	1 cut(s)	313
MwoI	GCNNNNNNNGC	1 cut(s)	310
NdeII	GATC	1 cut(s)	335
NlaIII	CATG	2 cut(s)	158, 348
NlaIV	GGNNCC	1 cut(s)	85
NsiI	ATGCAT	1 cut(s)	315
NspV	TTCGAA	1 cut(s)	207
PagI	TCATGA	2 cut(s)	154, 344
PciSI	GCTCTTC	1 cut(s)	183
PctI	GAATGC	1 cut(s)	313
PfeI	GAWTC	1 cut(s)	209
PkrI	GCNGC	2 cut(s)	49, 52
PspN4I	GGNNCC	1 cut(s)	85
PsuI	RGATCY	1 cut(s)	335
RsaI	GTAC	1 cut(s)	250
RsaNI	GTAC	1 cut(s)	249
SapI	GCTCTTC	1 cut(s)	183
SaqAI	TTAA	1 cut(s)	261
SatI	GCNGC	2 cut(s)	48, 51
Sau3AI	GATC	1 cut(s)	335
SetI	ASST	5 cut(s)	69, 104, 192, 297, 332
SfuI	TTCGAA	1 cut(s)	207
SmlI	CTYRAG	2 cut(s)	269, 331
SmoI	CTYRAG	2 cut(s)	269, 331
Sse9I	AATT	2 cut(s)	141, 203
SsiI	CCGC	2 cut(s)	47, 50
TaqI	TCGA	1 cut(s)	207
TasI	AATT	2 cut(s)	141, 203
TatI	WGTACW	1 cut(s)	248
TauI	GCSGC	2 cut(s)	50, 53
TfiI	GAWTC	1 cut(s)	209
Tru1I	TTAA	1 cut(s)	261
Tru9I	TTAA	1 cut(s)	261
TspDTI	ATGAA	2 cut(s)	171, 296
XapI	RAATTY	1 cut(s)	203
Zsp2I	ATGCAT	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.