Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0013735

Physical Location & Seq

Genomic Coordinates Forward (+)

44172675 .. 44172869

Gene Structure 195 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG268200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

ATGGCGGCGAAGGTAGGTTTCGACGGAGAAGCAGCAGCGGCGCTGGCGAAGGAGCTCCGAGCCAGCTTCGCATCTTCCAAGACTCGGAGCTACGAATGGAGAGTGTCGCAGCTCAACGGCCTCCTCAAGCTAGCTCACCACCGATCACGAGGCCGAGATCGTCTACGCTCTCAACTCCGACCTCTCCAAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004028 GO:0004029 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005794 GO:0005911 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009269 GO:0009414 GO:0009415 GO:0009506 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0012505 GO:0016020 GO:0016491 GO:0016620 GO:0016903 GO:0030054 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0055044 GO:0055114 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldedh

Protein Analysis

64

Amino Acids

7.14

Weight (kDa)

11.5

Isoelectric Point (pI)

47.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013735)

Species	Orthologous Gene IDs
malus_domestica	MD00G1029200.v1.1
pyrus_communis	pycom08g13770
rosa_chinensis	RchiOBHm_Chr6g0296181
rosa_multiflora	Rmu_co8154236.1_g000001 Rmu_co8256199.1_g000001 Rmu_sc0007413.1_g000001 Rmu_sc0019544.1_g000004
rosa_roxburghii	Rroxscaffold_7G00171770 Rroxscaffold_7G00178280
rosa_rugosa	Rorug04G0204800 Rorug06G0259000 Rorug06G0259100
rosa_samantha	Rh4BG268200 Rh4CG279300 Rh5AG220000 Rh7AG088400
rosa_wichuraiana	Rw2G019540 Rw4G035980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	163
AciI	CCGC	2 cut(s)	5, 38
AfiI	CCNNNNNNNGG	1 cut(s)	84
AluBI	AGCT	6 cut(s)	55, 66, 90, 112, 130, 134
AluI	AGCT	6 cut(s)	55, 66, 90, 112, 130, 134
Alw21I	GWGCWC	1 cut(s)	57
AoxI	GGCC	2 cut(s)	118, 151
ApeKI	GCWGC	3 cut(s)	32, 35, 109
AspLEI	GCGC	1 cut(s)	43
AsuHPI	GGTGA	1 cut(s)	128
AsuNHI	GCTAGC	1 cut(s)	130
BanII	GRGCYC	1 cut(s)	57
BauI	CACGAG	1 cut(s)	147
Bbv12I	GWGCWC	1 cut(s)	57
BbvI	GCAGC	3 cut(s)	44, 47, 121
BceAI	ACGGC	1 cut(s)	133
BfaI	CTAG	1 cut(s)	131
BfoI	RGCGCY	1 cut(s)	44
BisI	GCNGC	5 cut(s)	6, 33, 36, 39, 110
BlsI	GCNGC	5 cut(s)	7, 34, 37, 40, 111
BmsI	GCATC	1 cut(s)	80
BmtI	GCTAGC	1 cut(s)	134
BpuEI	CTTGAG	1 cut(s)	110
Bsc4I	CCNNNNNNNGG	1 cut(s)	84
BseLI	CCNNNNNNNGG	1 cut(s)	84
BseRI	GAGGAG	1 cut(s)	113
BseXI	GCAGC	3 cut(s)	44, 47, 121
BshFI	GGCC	2 cut(s)	120, 153
BsiHKAI	GWGCWC	1 cut(s)	57
BslI	CCNNNNNNNGG	1 cut(s)	84
BsnI	GGCC	2 cut(s)	120, 153
Bsp1286I	GDGCHC	1 cut(s)	57
Bsp143I	GATC	2 cut(s)	143, 157
BspACI	CCGC	2 cut(s)	5, 38
BspANI	GGCC	2 cut(s)	120, 153
BspOI	GCTAGC	1 cut(s)	134
BssMI	GATC	2 cut(s)	143, 157
BssSI	CACGAG	1 cut(s)	147
Bst2BI	CACGAG	1 cut(s)	147
BstC8I	GCNNGC	3 cut(s)	45, 64, 132
BstH2I	RGCGCY	1 cut(s)	44
BstHHI	GCGC	1 cut(s)	43
BstKTI	GATC	2 cut(s)	146, 160
BstMBI	GATC	2 cut(s)	143, 157
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 44, 68
BstV1I	GCAGC	3 cut(s)	44, 47, 121
BsuRI	GGCC	2 cut(s)	120, 153
Cac8I	GCNNGC	3 cut(s)	45, 64, 132
CfoI	GCGC	1 cut(s)	43
DpnI	GATC	2 cut(s)	145, 159
DpnII	GATC	2 cut(s)	143, 157
Ecl136II	GAGCTC	1 cut(s)	55
Eco24I	GRGCYC	1 cut(s)	57
Eco53kI	GAGCTC	1 cut(s)	55
EcoICRI	GAGCTC	1 cut(s)	55
EcoT38I	GRGCYC	1 cut(s)	57
FblI	GTMKAC	1 cut(s)	163
Fnu4HI	GCNGC	5 cut(s)	6, 33, 36, 39, 110
FriOI	GRGCYC	1 cut(s)	57
Fsp4HI	GCNGC	5 cut(s)	6, 33, 36, 39, 110
FspBI	CTAG	1 cut(s)	131
GlaI	GCGC	1 cut(s)	42
GluI	GCNGC	5 cut(s)	6, 33, 36, 39, 110
HaeII	RGCGCY	1 cut(s)	44
HaeIII	GGCC	2 cut(s)	120, 153
HhaI	GCGC	1 cut(s)	43
Hin6I	GCGC	1 cut(s)	41
HinP1I	GCGC	1 cut(s)	41
HinfI	GANTC	1 cut(s)	82
HphI	GGTGA	1 cut(s)	128
Hpy166II	GTNNAC	1 cut(s)	164
Hpy188I	TCNGA	3 cut(s)	59, 87, 179
Hpy188III	TCNNGA	1 cut(s)	147
Hpy8I	GTNNAC	1 cut(s)	164
Hpy99I	CGWCG	1 cut(s)	26
HpyAV	CCTTC	2 cut(s)	4, 43
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 44, 68
HspAI	GCGC	1 cut(s)	41
Kzo9I	GATC	2 cut(s)	143, 157
LmnI	GCTCC	3 cut(s)	52, 60, 87
LpnPI	CCDG	2 cut(s)	29, 76
Lsp1109I	GCAGC	3 cut(s)	44, 47, 121
LweI	GCATC	1 cut(s)	80
MaeI	CTAG	1 cut(s)	131
MalI	GATC	2 cut(s)	145, 159
MboI	GATC	2 cut(s)	143, 157
MboII	GAAGA	1 cut(s)	66
MhlI	GDGCHC	1 cut(s)	57
MlyI	GAGTC	1 cut(s)	76
MnlI	CCTC	4 cut(s)	131, 134, 143, 192
MspA1I	CMGCKG	1 cut(s)	38
MwoI	GCNNNNNNNGC	3 cut(s)	38, 44, 68
NdeII	GATC	2 cut(s)	143, 157
NheI	GCTAGC	1 cut(s)	130
NmeAIII	GCCGAG	1 cut(s)	179
PkrI	GCNGC	5 cut(s)	7, 34, 37, 40, 111
PleI	GAGTC	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	76
Psp124BI	GAGCTC	1 cut(s)	57
SacI	GAGCTC	1 cut(s)	57
SatI	GCNGC	5 cut(s)	6, 33, 36, 39, 110
Sau3AI	GATC	2 cut(s)	143, 157
SchI	GAGTC	1 cut(s)	76
SduI	GDGCHC	1 cut(s)	57
SetI	ASST	9 cut(s)	15, 19, 57, 68, 92, 114, 132, 136, 184
SfaNI	GCATC	1 cut(s)	80
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
SsiI	CCGC	2 cut(s)	5, 38
SspMI	CTAG	1 cut(s)	131
SstI	GAGCTC	1 cut(s)	57
TaqI	TCGA	1 cut(s)	21
TauI	GCSGC	2 cut(s)	8, 41
TseI	GCWGC	3 cut(s)	32, 35, 109
TspGWI	ACGGA	1 cut(s)	39
XmiI	GTMKAC	1 cut(s)	163
XspI	CTAG	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.