Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0013735

Physical Location & Seq

Genomic Coordinates Forward (+)

53637052 .. 53637546

Gene Structure 495 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG279300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGCTGCGAAGGTAGGTTTCGACGGAGAAGCAGCAGCGGCGCTGGCGAAGGAGCTCCGAGCCAGCTTCGCATCTTCCAAGACTCGGAGCTACGAATGGAGAGTGTCGCAGCTCAACGGCCTCCTCAAGCTCACCACCGATCACGAGGCCGAGATCGTGGACGCTCTCAACTCCGACCTCTCCAAGCCTGAATTCGAGTCCCTAATCTACGAGATATGCATGGTAAAGAGCTCGTGTAAATTGGCAATCAAACAACTCAAGTCATGGATGAAGCCAAAGAAGGCTAAACCTTCAATGACCACTTTCCCTTCGTCAGCTAAAATAGTGTCTGAGCCTCTTGGTGTTGTACTAGTAATTTCAGCATGGAATTATCCTTTCTTGTTGTCCCTTGATCCAGTCGTTGGAGCCATCGCAGCTGGTAATGCTGTGGTTCTAAAACCATCAGAACTTGCTCCTGCCATTGCTTGCAAAACTATTAGGAAAGTATATGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004028 GO:0004029 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005794 GO:0005911 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009269 GO:0009414 GO:0009415 GO:0009506 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0012505 GO:0016020 GO:0016491 GO:0016620 GO:0016903 GO:0030054 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0055044 GO:0055114 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldedh

Protein Analysis

164

Amino Acids

17.67

Weight (kDa)

9.24

Isoelectric Point (pI)

34.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldedh	PF00171	13 - 159	2.9e-21	Aldehyde dehydrogenase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0013735)

Species	Orthologous Gene IDs
malus_domestica	MD00G1029200.v1.1
pyrus_communis	pycom08g13770
rosa_chinensis	RchiOBHm_Chr6g0296181
rosa_multiflora	Rmu_co8154236.1_g000001 Rmu_co8256199.1_g000001 Rmu_sc0007413.1_g000001 Rmu_sc0019544.1_g000004
rosa_roxburghii	Rroxscaffold_7G00171770 Rroxscaffold_7G00178280
rosa_rugosa	Rorug04G0204800 Rorug06G0259000 Rorug06G0259100
rosa_samantha	Rh4BG268200 Rh4CG279300 Rh5AG220000 Rh7AG088400
rosa_wichuraiana	Rw2G019540 Rw4G035980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	401
AciI	CCGC	1 cut(s)	38
AclWI	GGATC	1 cut(s)	386
AcsI	RAATTY	1 cut(s)	191
AfaI	GTAC	1 cut(s)	348
AfiI	CCNNNNNNNGG	2 cut(s)	84, 401
AgsI	TTSAA	1 cut(s)	294
AhlI	ACTAGT	1 cut(s)	349
AjuI	GAANNNNNNNTTGG	2 cut(s)	176, 208
AluBI	AGCT	8 cut(s)	55, 66, 90, 112, 130, 231, 317, 416
AluI	AGCT	8 cut(s)	55, 66, 90, 112, 130, 231, 317, 416
Alw21I	GWGCWC	2 cut(s)	57, 233
AlwI	GGATC	1 cut(s)	386
AoxI	GGCC	2 cut(s)	118, 147
ApeKI	GCWGC	5 cut(s)	5, 32, 35, 109, 413
ApoI	RAATTY	1 cut(s)	191
AspLEI	GCGC	1 cut(s)	43
AsuHPI	GGTGA	1 cut(s)	124
BanII	GRGCYC	2 cut(s)	57, 233
BauI	CACGAG	2 cut(s)	143, 232
Bbv12I	GWGCWC	2 cut(s)	57, 233
BbvI	GCAGC	4 cut(s)	44, 47, 121, 425
BccI	CCATC	2 cut(s)	416, 448
BceAI	ACGGC	1 cut(s)	133
BcuI	ACTAGT	1 cut(s)	349
BfaI	CTAG	1 cut(s)	350
BfoI	RGCGCY	1 cut(s)	44
BisI	GCNGC	6 cut(s)	6, 33, 36, 39, 110, 414
BlsI	GCNGC	6 cut(s)	7, 34, 37, 40, 111, 415
BmiI	GGNNCC	1 cut(s)	406
BmsI	GCATC	1 cut(s)	80
BpuEI	CTTGAG	2 cut(s)	110, 242
Bsc4I	CCNNNNNNNGG	2 cut(s)	84, 401
Bse1I	ACTGG	1 cut(s)	395
Bse3DI	GCAATG	1 cut(s)	459
BseGI	GGATG	1 cut(s)	273
BseLI	CCNNNNNNNGG	2 cut(s)	84, 401
BseMI	GCAATG	1 cut(s)	459
BseMII	CTCAG	1 cut(s)	321
BseNI	ACTGG	1 cut(s)	395
BseRI	GAGGAG	1 cut(s)	113
BseXI	GCAGC	4 cut(s)	44, 47, 121, 425
BshFI	GGCC	2 cut(s)	120, 149
BsiHKAI	GWGCWC	2 cut(s)	57, 233
BslFI	GGGAC	2 cut(s)	184, 370
BslI	CCNNNNNNNGG	2 cut(s)	84, 401
BsmFI	GGGAC	2 cut(s)	184, 370
BsnI	GGCC	2 cut(s)	120, 149
Bsp1286I	GDGCHC	2 cut(s)	57, 233
Bsp143I	GATC	3 cut(s)	139, 153, 391
BspACI	CCGC	1 cut(s)	38
BspANI	GGCC	2 cut(s)	120, 149
BspCNI	CTCAG	1 cut(s)	322
BspLI	GGNNCC	1 cut(s)	406
BspPI	GGATC	1 cut(s)	386
BsrDI	GCAATG	1 cut(s)	459
BsrI	ACTGG	1 cut(s)	395
BssMI	GATC	3 cut(s)	139, 153, 391
BssSI	CACGAG	2 cut(s)	143, 232
Bst2BI	CACGAG	2 cut(s)	143, 232
BstC8I	GCNNGC	3 cut(s)	45, 64, 466
BstDEI	CTNAG	1 cut(s)	330
BstF5I	GGATG	1 cut(s)	273
BstH2I	RGCGCY	1 cut(s)	44
BstHHI	GCGC	1 cut(s)	43
BstKTI	GATC	3 cut(s)	142, 156, 394
BstMBI	GATC	3 cut(s)	139, 153, 391
BstMWI	GCNNNNNNNGC	5 cut(s)	38, 44, 68, 413, 422
BstV1I	GCAGC	4 cut(s)	44, 47, 121, 425
BsuRI	GGCC	2 cut(s)	120, 149
BtgZI	GCGATG	1 cut(s)	394
BtsCI	GGATG	1 cut(s)	273
Cac8I	GCNNGC	3 cut(s)	45, 64, 466
CfoI	GCGC	1 cut(s)	43
CseI	GACGC	1 cut(s)	170
Csp6I	GTAC	1 cut(s)	347
CviAII	CATG	3 cut(s)	220, 264, 363
CviQI	GTAC	1 cut(s)	347
DdeI	CTNAG	1 cut(s)	330
DpnI	GATC	3 cut(s)	141, 155, 393
DpnII	GATC	3 cut(s)	139, 153, 391
Ecl136II	GAGCTC	2 cut(s)	55, 231
Eco24I	GRGCYC	2 cut(s)	57, 233
Eco53kI	GAGCTC	2 cut(s)	55, 231
EcoICRI	GAGCTC	2 cut(s)	55, 231
EcoRI	GAATTC	1 cut(s)	191
EcoT22I	ATGCAT	1 cut(s)	221
EcoT38I	GRGCYC	2 cut(s)	57, 233
FaeI	CATG	3 cut(s)	223, 267, 366
FaiI	YATR	6 cut(s)	217, 221, 265, 364, 487, 489
FaqI	GGGAC	2 cut(s)	184, 370
FatI	CATG	3 cut(s)	219, 263, 362
Fnu4HI	GCNGC	6 cut(s)	6, 33, 36, 39, 110, 414
FokI	GGATG	1 cut(s)	280
FriOI	GRGCYC	2 cut(s)	57, 233
Fsp4HI	GCNGC	6 cut(s)	6, 33, 36, 39, 110, 414
FspBI	CTAG	1 cut(s)	350
GlaI	GCGC	1 cut(s)	42
GluI	GCNGC	6 cut(s)	6, 33, 36, 39, 110, 414
HaeII	RGCGCY	1 cut(s)	44
HaeIII	GGCC	2 cut(s)	120, 149
HgaI	GACGC	1 cut(s)	170
HhaI	GCGC	1 cut(s)	43
Hin1II	CATG	3 cut(s)	223, 267, 366
Hin6I	GCGC	1 cut(s)	41
HinP1I	GCGC	1 cut(s)	41
HinfI	GANTC	2 cut(s)	82, 197
HphI	GGTGA	1 cut(s)	124
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188I	TCNGA	5 cut(s)	59, 87, 175, 331, 445
Hpy188III	TCNNGA	1 cut(s)	143
Hpy8I	GTNNAC	1 cut(s)	160
Hpy99I	CGWCG	1 cut(s)	26
HpyAV	CCTTC	5 cut(s)	4, 43, 274, 300, 318
HpyCH4V	TGCA	2 cut(s)	219, 468
HpyF10VI	GCNNNNNNNGC	5 cut(s)	38, 44, 68, 413, 422
HpyF3I	CTNAG	1 cut(s)	330
Hsp92II	CATG	3 cut(s)	223, 267, 366
HspAI	GCGC	1 cut(s)	41
Kzo9I	GATC	3 cut(s)	139, 153, 391
LmnI	GCTCC	5 cut(s)	52, 60, 87, 404, 457
LpnPI	CCDG	6 cut(s)	29, 76, 201, 402, 408, 468
Lsp1109I	GCAGC	4 cut(s)	44, 47, 121, 425
LweI	GCATC	1 cut(s)	80
MaeI	CTAG	1 cut(s)	350
MalI	GATC	3 cut(s)	141, 155, 393
MboI	GATC	3 cut(s)	139, 153, 391
MboII	GAAGA	1 cut(s)	66
MhlI	GDGCHC	2 cut(s)	57, 233
MluCI	AATT	4 cut(s)	191, 239, 354, 367
MlyI	GAGTC	2 cut(s)	76, 206
MmeI	TCCRAC	2 cut(s)	198, 382
MnlI	CCTC	5 cut(s)	131, 134, 139, 188, 345
Mph1103I	ATGCAT	1 cut(s)	221
MspA1I	CMGCKG	2 cut(s)	38, 416
MwoI	GCNNNNNNNGC	5 cut(s)	38, 44, 68, 413, 422
NdeII	GATC	3 cut(s)	139, 153, 391
NlaIII	CATG	3 cut(s)	223, 267, 366
NlaIV	GGNNCC	1 cut(s)	406
NmeAIII	GCCGAG	1 cut(s)	175
NsiI	ATGCAT	1 cut(s)	221
PflMI	CCANNNNNTGG	1 cut(s)	401
PkrI	GCNGC	6 cut(s)	7, 34, 37, 40, 111, 415
PleI	GAGTC	2 cut(s)	76, 205
PpsI	GAGTC	2 cut(s)	76, 205
Psp124BI	GAGCTC	2 cut(s)	57, 233
PspN4I	GGNNCC	1 cut(s)	406
PvuII	CAGCTG	1 cut(s)	416
RsaI	GTAC	1 cut(s)	348
RsaNI	GTAC	1 cut(s)	347
SacI	GAGCTC	2 cut(s)	57, 233
SatI	GCNGC	6 cut(s)	6, 33, 36, 39, 110, 414
Sau3AI	GATC	3 cut(s)	139, 153, 391
SchI	GAGTC	2 cut(s)	76, 206
SduI	GDGCHC	2 cut(s)	57, 233
SfaNI	GCATC	1 cut(s)	80
SmlI	CTYRAG	2 cut(s)	125, 257
SmoI	CTYRAG	2 cut(s)	125, 257
SpeI	ACTAGT	1 cut(s)	349
Sse9I	AATT	4 cut(s)	191, 239, 354, 367
SsiI	CCGC	1 cut(s)	38
SspMI	CTAG	1 cut(s)	350
SstI	GAGCTC	2 cut(s)	57, 233
TaqI	TCGA	2 cut(s)	21, 195
TasI	AATT	4 cut(s)	191, 239, 354, 367
TatI	WGTACW	1 cut(s)	346
TauI	GCSGC	1 cut(s)	41
TseI	GCWGC	5 cut(s)	5, 32, 35, 109, 413
TspDTI	ATGAA	1 cut(s)	284
TspGWI	ACGGA	1 cut(s)	39
Van91I	CCANNNNNTGG	1 cut(s)	401
XapI	RAATTY	1 cut(s)	191
XspI	CTAG	1 cut(s)	350
Zsp2I	ATGCAT	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.