Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0013735

Physical Location & Seq

Genomic Coordinates Reverse (-)

62807849 .. 62818972

Gene Structure 11124 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G035980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1326 bp

ATGCAGATCCAAAGGTGCACTGGTGCTGTGGTGATAACAAGGGGCAAGTATCATCCACCAAATGCGTCAACTGATGGTGAAAAGCCATTATATCTTCATATTTCTGCAGGGGCTAATATAGGCATGTTGAAGAGCTCGTGTAAATTGGCAATCAAACAACTGAAGTCATGGATGAAGCCAGAGAAGGCTAAAACTTCAATAACCACTTTCCCTTCCTCAGCTGAAATAGTGTCTGAGCCTCTTGGTGTTGTTCTAATAATTTCAGCATGGAATTATCCTTTCTTGTTGTCCCTTGATCCAGTTGTTGGAGCCATTGCAGCTAGTAATGCTGTAGTTCTAAAACCATCAGAACTTGCTCCTGCCACATCGTCATTGCTTGCAAAACTTTTAGGAGAGTATATGGATAGCTCTTCTGTGAGAGTTGTTGAGGGGGCTGGTGCTGAAACATCTGCACTACTGGAGCAGAAGTGGGACAAAATATGTTACACAGGTACTTATTTTCCTCACTTTGTTATAGCTGCTATCACTTACCAAATAGTTCCCACTGACACACAGTACGCTGAGATACCTATTGCTGCTGTCAGTTCAATGTACCAACACAAGGGATTTGGTAGCTCCTTGCTCCTGGAATTGAAAAAGAGACTTCAAAGTGTTGGTATATGCACAATATTCTGTTGGGGAGACAAGGAATCTGAAGGGTTTTGGCTCAAACAGGTAATTAACGTTTTTGAAAAAACATCAGTTACTGATGAAGAACTGATGTCAAAAAACAGAAATTACATCAATTTAAAAATAAAAACCGATGTCAGAAAAGAGAAAATACATCAGTTTGGAAACAAAAAACGATGTCAAGAAAGAGAAAATACATCACAGAGGCGAAGGTATGTCCATGGAATCTTCACAATTCGAATTTCAATTTCTGCATATGGAAAGGGTTGTCATATGGATTATTGTTTAGCATATGGAAAGGGTTGTCATAATCATATTCAAATTGCTTGTTCATATTGGTTGTTGGAATTATGCATTTGTGATTTGAATGATTCTCAACTTAAGCATGTTATGTCTTCTGCCACAAAGGTGCTGCTTAACATTGATTTCAGCTGTGGAGCATGGATCAGCGGCGACTGGGATCAGACGGCGGTGACGACGGCGGCAGGAGCTCGACATCCCTCTCAGTCTCTCTCTTCCACTGTGATATGGATATGCCCAATGGCCGCGTTTGTTTGCCTGGATAATAATTGGATGAGACTAAAAAAAATCCAAGCTAGTGTTTGGTGGTTCAGTTTACTCAAGGATTGGAAATTAAATCTTGTCAAGGTAGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004028 GO:0004029 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005794 GO:0005911 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009269 GO:0009414 GO:0009415 GO:0009506 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0012505 GO:0016020 GO:0016491 GO:0016620 GO:0016903 GO:0030054 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0055044 GO:0055114 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldedh

Protein Analysis

441

Amino Acids

49.14

Weight (kDa)

9.0

Isoelectric Point (pI)

40.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_12	PF23469	2 - 41	5.1e-12	KH-domain
Aldedh	PF00171	46 - 164	3.2e-19	Aldehyde dehydrogenase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013735)

Species	Orthologous Gene IDs
malus_domestica	MD00G1029200.v1.1
pyrus_communis	pycom08g13770
rosa_chinensis	RchiOBHm_Chr6g0296181
rosa_multiflora	Rmu_co8154236.1_g000001 Rmu_co8256199.1_g000001 Rmu_sc0007413.1_g000001 Rmu_sc0019544.1_g000004
rosa_roxburghii	Rroxscaffold_7G00171770 Rroxscaffold_7G00178280
rosa_rugosa	Rorug04G0204800 Rorug06G0259000 Rorug06G0259100
rosa_samantha	Rh4BG268200 Rh4CG279300 Rh5AG220000 Rh7AG088400
rosa_wichuraiana	Rw2G019540 Rw4G035980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	305
AccII	CGCG	1 cut(s)	1217
AciI	CCGC	4 cut(s)	1119, 1139, 1151, 1215
AclI	AACGTT	1 cut(s)	723
AclWI	GGATC	3 cut(s)	290, 1121, 1137
AcoI	YGGCCR	1 cut(s)	1212
AcsI	RAATTY	1 cut(s)	909
AcuI	CTGAAG	2 cut(s)	182, 714
AfaI	GTAC	3 cut(s)	493, 557, 593
AfiI	CCNNNNNNNGG	2 cut(s)	305, 601
AflII	CTTAAG	1 cut(s)	1049
AgsI	TTSAA	9 cut(s)	130, 198, 588, 634, 647, 731, 915, 989, 1036
AjnI	CCWGG	2 cut(s)	624, 1227
AleI	CACNNNNGTG	1 cut(s)	1076
AluBI	AGCT	9 cut(s)	135, 221, 320, 408, 518, 615, 1101, 1160, 1265
AluI	AGCT	9 cut(s)	135, 221, 320, 408, 518, 615, 1101, 1160, 1265
Alw21I	GWGCWC	3 cut(s)	20, 137, 1162
Alw26I	GTCTC	4 cut(s)	634, 675, 1182, 1240
Alw44I	GTGCAC	1 cut(s)	16
AlwI	GGATC	3 cut(s)	290, 1121, 1137
AlwNI	CAGNNNCTG	1 cut(s)	746
AoxI	GGCC	1 cut(s)	1212
ApaLI	GTGCAC	1 cut(s)	16
ApeKI	GCWGC	4 cut(s)	317, 518, 575, 1081
ApoI	RAATTY	1 cut(s)	909
AsuHPI	GGTGA	3 cut(s)	43, 89, 1153
AsuII	TTCGAA	1 cut(s)	907
BaeGI	GKGCMC	1 cut(s)	20
BanII	GRGCYC	2 cut(s)	137, 1162
BauI	CACGAG	1 cut(s)	136
BbsI	GAAGAC	1 cut(s)	1056
Bbv12I	GWGCWC	3 cut(s)	20, 137, 1162
BbvCI	CCTCAGC	1 cut(s)	217
BbvI	GCAGC	4 cut(s)	329, 505, 562, 1068
BccI	CCATC	2 cut(s)	68, 352
BceAI	ACGGC	2 cut(s)	1152, 1164
BciT130I	CCWGG	2 cut(s)	626, 1229
BcoDI	GTCTC	4 cut(s)	634, 675, 1182, 1240
BfaI	CTAG	2 cut(s)	321, 1266
BfmI	CTRYAG	2 cut(s)	105, 330
BfrI	CTTAAG	1 cut(s)	1049
BisI	GCNGC	7 cut(s)	318, 519, 576, 1082, 1120, 1152, 1215
BlsI	GCNGC	7 cut(s)	319, 520, 577, 1083, 1121, 1153, 1216
Bme1390I	CCNGG	2 cut(s)	626, 1229
BmiI	GGNNCC	1 cut(s)	310
BmrFI	CCNGG	2 cut(s)	626, 1229
BmrI	ACTGGG	1 cut(s)	1135
BmuI	ACTGGG	1 cut(s)	1135
BpiI	GAAGAC	1 cut(s)	1056
BpmI	CTGGAG	1 cut(s)	479
Bpu10I	CCTNAGC	1 cut(s)	217
Bpu14I	TTCGAA	1 cut(s)	907
BpuEI	CTTGAG	1 cut(s)	1274
BsaJI	CCNNGG	1 cut(s)	889
BsaXI	ACNNNNNCTCC	2 cut(s)	452, 482
Bsc4I	CCNNNNNNNGG	2 cut(s)	305, 601
Bse1I	ACTGG	4 cut(s)	25, 299, 462, 1130
Bse3DI	GCAATG	2 cut(s)	312, 371
BseBI	CCWGG	2 cut(s)	626, 1229
BseDI	CCNNGG	1 cut(s)	889
BseGI	GGATG	4 cut(s)	52, 177, 1165, 1248
BseLI	CCNNNNNNNGG	2 cut(s)	305, 601
BseMI	GCAATG	2 cut(s)	312, 371
BseMII	CTCAG	4 cut(s)	225, 231, 552, 1187
BseNI	ACTGG	4 cut(s)	25, 299, 462, 1130
BseSI	GKGCMC	1 cut(s)	20
BseXI	GCAGC	4 cut(s)	329, 505, 562, 1068
BsgI	GTGCAG	1 cut(s)	435
Bsh1236I	CGCG	1 cut(s)	1217
BshFI	GGCC	1 cut(s)	1214
BsiHKAI	GWGCWC	3 cut(s)	20, 137, 1162
BslFI	GGGAC	2 cut(s)	274, 485
BslI	CCNNNNNNNGG	2 cut(s)	305, 601
BsmAI	GTCTC	4 cut(s)	634, 675, 1182, 1240
BsmFI	GGGAC	2 cut(s)	274, 485
BsnI	GGCC	1 cut(s)	1214
Bsp119I	TTCGAA	1 cut(s)	907
Bsp1286I	GDGCHC	3 cut(s)	20, 137, 1162
Bsp143I	GATC	4 cut(s)	6, 295, 1113, 1129
Bsp19I	CCATGG	1 cut(s)	889
BspACI	CCGC	4 cut(s)	1119, 1139, 1151, 1215
BspANI	GGCC	1 cut(s)	1214
BspCNI	CTCAG	4 cut(s)	226, 230, 553, 1186
BspFNI	CGCG	1 cut(s)	1217
BspLI	GGNNCC	1 cut(s)	310
BspMAI	CTGCAG	1 cut(s)	109
BspPI	GGATC	3 cut(s)	290, 1121, 1137
BspQI	GCTCTTC	2 cut(s)	125, 415
BspT104I	TTCGAA	1 cut(s)	907
BspTI	CTTAAG	1 cut(s)	1049
BsrDI	GCAATG	2 cut(s)	312, 371
BsrI	ACTGG	4 cut(s)	25, 299, 462, 1130
BssECI	CCNNGG	1 cut(s)	889
BssMI	GATC	4 cut(s)	6, 295, 1113, 1129
BssSI	CACGAG	1 cut(s)	136
BssT1I	CCWWGG	1 cut(s)	889
Bst2BI	CACGAG	1 cut(s)	136
Bst2UI	CCWGG	2 cut(s)	626, 1229
Bst4CI	ACNGT	2 cut(s)	555, 1192
Bst6I	CTCTTC	3 cut(s)	125, 415, 1189
BstAFI	CTTAAG	1 cut(s)	1049
BstBI	TTCGAA	1 cut(s)	907
BstC8I	GCNNGC	1 cut(s)	378
BstDEI	CTNAG	4 cut(s)	217, 234, 561, 1173
BstDSI	CCRYGG	1 cut(s)	889
BstF5I	GGATG	4 cut(s)	52, 177, 1165, 1248
BstFNI	CGCG	1 cut(s)	1217
BstKTI	GATC	4 cut(s)	9, 298, 1116, 1132
BstMAI	GTCTC	4 cut(s)	634, 675, 1182, 1240
BstMBI	GATC	4 cut(s)	6, 295, 1113, 1129
BstMWI	GCNNNNNNNGC	3 cut(s)	317, 326, 1157
BstNI	CCWGG	2 cut(s)	626, 1229
BstNSI	RCATGY	2 cut(s)	127, 1058
BstSCI	CCNGG	2 cut(s)	624, 1227
BstSFI	CTRYAG	2 cut(s)	105, 330
BstSLI	GKGCMC	1 cut(s)	20
BstUI	CGCG	1 cut(s)	1217
BstV1I	GCAGC	4 cut(s)	329, 505, 562, 1068
BstV2I	GAAGAC	1 cut(s)	1056
BstX2I	RGATCY	1 cut(s)	6
BstYI	RGATCY	1 cut(s)	6
BsuRI	GGCC	1 cut(s)	1214
BtgI	CCRYGG	1 cut(s)	889
BtsCI	GGATG	4 cut(s)	52, 177, 1165, 1248
BtsIMutI	CAGTG	3 cut(s)	18, 543, 1188
Cac8I	GCNNGC	1 cut(s)	378
CaiI	CAGNNNCTG	1 cut(s)	746
CseI	GACGC	1 cut(s)	54
Csp6I	GTAC	3 cut(s)	492, 556, 592
CviAII	CATG	6 cut(s)	124, 168, 267, 890, 1055, 1110
CviQI	GTAC	3 cut(s)	492, 556, 592
DdeI	CTNAG	4 cut(s)	217, 234, 561, 1173
DpnI	GATC	4 cut(s)	8, 297, 1115, 1131
DpnII	GATC	4 cut(s)	6, 295, 1113, 1129
DraI	TTTAAA	1 cut(s)	789
EaeI	YGGCCR	1 cut(s)	1212
Eam1104I	CTCTTC	3 cut(s)	125, 415, 1189
EarI	CTCTTC	3 cut(s)	125, 415, 1189
Ecl136II	GAGCTC	2 cut(s)	135, 1160
Eco130I	CCWWGG	1 cut(s)	889
Eco24I	GRGCYC	2 cut(s)	137, 1162
Eco53kI	GAGCTC	2 cut(s)	135, 1160
Eco57I	CTGAAG	2 cut(s)	182, 714
EcoICRI	GAGCTC	2 cut(s)	135, 1160
EcoRII	CCWGG	2 cut(s)	624, 1227
EcoT14I	CCWWGG	1 cut(s)	889
EcoT22I	ATGCAT	1 cut(s)	1025
EcoT38I	GRGCYC	2 cut(s)	137, 1162
ErhI	CCWWGG	1 cut(s)	889
FaeI	CATG	6 cut(s)	127, 171, 270, 893, 1058, 1113
FaqI	GGGAC	2 cut(s)	274, 485
FatI	CATG	6 cut(s)	123, 167, 266, 889, 1054, 1109
FauNDI	CATATG	3 cut(s)	925, 942, 961
Fnu4HI	GCNGC	7 cut(s)	318, 519, 576, 1082, 1120, 1152, 1215
FokI	GGATG	4 cut(s)	39, 184, 1152, 1255
FriOI	GRGCYC	2 cut(s)	137, 1162
Fsp4HI	GCNGC	7 cut(s)	318, 519, 576, 1082, 1120, 1152, 1215
FspBI	CTAG	2 cut(s)	321, 1266
GluI	GCNGC	7 cut(s)	318, 519, 576, 1082, 1120, 1152, 1215
GsuI	CTGGAG	1 cut(s)	479
HaeIII	GGCC	1 cut(s)	1214
HgaI	GACGC	1 cut(s)	54
Hin1II	CATG	6 cut(s)	127, 171, 270, 893, 1058, 1113
HincII	GTYRAC	1 cut(s)	69
HindII	GTYRAC	1 cut(s)	69
HinfI	GANTC	3 cut(s)	689, 894, 1040
HphI	GGTGA	3 cut(s)	43, 89, 1153
Hpy166II	GTNNAC	3 cut(s)	18, 69, 1286
Hpy188I	TCNGA	5 cut(s)	235, 349, 694, 809, 1134
Hpy188III	TCNNGA	1 cut(s)	851
Hpy8I	GTNNAC	3 cut(s)	18, 69, 1286
Hpy99I	CGWCG	1 cut(s)	1150
HpyAV	CCTTC	4 cut(s)	178, 222, 689, 873
HpyCH4III	ACNGT	2 cut(s)	555, 1192
HpyCH4IV	ACGT	1 cut(s)	723
HpyCH4V	TGCA	9 cut(s)	4, 18, 107, 317, 380, 452, 663, 923, 1023
HpyF10VI	GCNNNNNNNGC	3 cut(s)	317, 326, 1157
HpyF3I	CTNAG	4 cut(s)	217, 234, 561, 1173
HpySE526I	ACGT	1 cut(s)	723
Hsp92II	CATG	6 cut(s)	127, 171, 270, 893, 1058, 1113
Kzo9I	GATC	4 cut(s)	6, 295, 1113, 1129
LguI	GCTCTTC	2 cut(s)	125, 415
LmnI	GCTCC	7 cut(s)	308, 361, 460, 620, 627, 1106, 1157
Lsp1109I	GCAGC	4 cut(s)	329, 505, 562, 1068
MaeI	CTAG	2 cut(s)	321, 1266
MaeII	ACGT	1 cut(s)	723
MaeIII	GTNAC	3 cut(s)	482, 742, 1141
MalI	GATC	4 cut(s)	8, 297, 1115, 1131
MboI	GATC	4 cut(s)	6, 295, 1113, 1129
MboII	GAAGA	7 cut(s)	86, 142, 402, 764, 889, 1056, 1176
MflI	RGATCY	1 cut(s)	6
MhlI	GDGCHC	3 cut(s)	20, 137, 1162
MmeI	TCCRAC	2 cut(s)	286, 993
MnlI	CCTC	6 cut(s)	226, 249, 421, 513, 867, 1180
Mph1103I	ATGCAT	1 cut(s)	1025
MseI	TTAA	5 cut(s)	720, 788, 1050, 1086, 1304
MslI	CAYNNNNRTG	1 cut(s)	1076
MspA1I	CMGCKG	3 cut(s)	221, 1101, 1119
MspCI	CTTAAG	1 cut(s)	1049
MspR9I	CCNGG	2 cut(s)	626, 1229
MvaI	CCWGG	2 cut(s)	626, 1229
MvnI	CGCG	1 cut(s)	1217
MwoI	GCNNNNNNNGC	3 cut(s)	317, 326, 1157
NcoI	CCATGG	1 cut(s)	889
NdeI	CATATG	3 cut(s)	925, 942, 961
NdeII	GATC	4 cut(s)	6, 295, 1113, 1129
NlaIII	CATG	6 cut(s)	127, 171, 270, 893, 1058, 1113
NlaIV	GGNNCC	1 cut(s)	310
NmuCI	GTSAC	1 cut(s)	1141
NsiI	ATGCAT	1 cut(s)	1025
NspI	RCATGY	2 cut(s)	127, 1058
NspV	TTCGAA	1 cut(s)	907
OliI	CACNNNNGTG	1 cut(s)	1076
PciSI	GCTCTTC	2 cut(s)	125, 415
PcsI	WCGNNNNNNNCGW	1 cut(s)	1142
PfeI	GAWTC	3 cut(s)	689, 894, 1040
PflMI	CCANNNNNTGG	1 cut(s)	305
PfoI	TCCNGGA	1 cut(s)	624
PkrI	GCNGC	7 cut(s)	319, 520, 577, 1083, 1121, 1153, 1216
Psp124BI	GAGCTC	2 cut(s)	137, 1162
Psp1406I	AACGTT	1 cut(s)	723
Psp6I	CCWGG	2 cut(s)	624, 1227
PspGI	CCWGG	2 cut(s)	624, 1227
PspN4I	GGNNCC	1 cut(s)	310
PstI	CTGCAG	1 cut(s)	109
PstNI	CAGNNNCTG	1 cut(s)	746
PsuI	RGATCY	1 cut(s)	6
PvuII	CAGCTG	2 cut(s)	221, 1101
RsaI	GTAC	3 cut(s)	493, 557, 593
RsaNI	GTAC	3 cut(s)	492, 556, 592
RseI	CAYNNNNRTG	1 cut(s)	1076
SacI	GAGCTC	2 cut(s)	137, 1162
SapI	GCTCTTC	2 cut(s)	125, 415
SaqAI	TTAA	5 cut(s)	720, 788, 1050, 1086, 1304
SatI	GCNGC	7 cut(s)	318, 519, 576, 1082, 1120, 1152, 1215
Sau3AI	GATC	4 cut(s)	6, 295, 1113, 1129
ScrFI	CCNGG	2 cut(s)	626, 1229
SduI	GDGCHC	3 cut(s)	20, 137, 1162
SfcI	CTRYAG	2 cut(s)	105, 330
SfuI	TTCGAA	1 cut(s)	907
SmiMI	CAYNNNNRTG	1 cut(s)	1076
SmlI	CTYRAG	2 cut(s)	1049, 1289
SmoI	CTYRAG	2 cut(s)	1049, 1289
SsiI	CCGC	4 cut(s)	1119, 1139, 1151, 1215
SspI	AATATT	1 cut(s)	669
SspMI	CTAG	2 cut(s)	321, 1266
SstI	GAGCTC	2 cut(s)	137, 1162
StyD4I	CCNGG	2 cut(s)	624, 1227
StyI	CCWWGG	1 cut(s)	889
TaaI	ACNGT	2 cut(s)	555, 1192
TaiI	ACGT	1 cut(s)	726
TaqI	TCGA	2 cut(s)	907, 1162
TauI	GCSGC	3 cut(s)	1122, 1154, 1217
TfiI	GAWTC	3 cut(s)	689, 894, 1040
Tru1I	TTAA	5 cut(s)	720, 788, 1050, 1086, 1304
Tru9I	TTAA	5 cut(s)	720, 788, 1050, 1086, 1304
TscAI	CASTG	3 cut(s)	25, 550, 1195
TseFI	GTSAC	1 cut(s)	1141
TseI	GCWGC	4 cut(s)	317, 518, 575, 1081
Tsp45I	GTSAC	1 cut(s)	1141
TspDTI	ATGAA	4 cut(s)	86, 188, 765, 990
TspRI	CASTG	3 cut(s)	25, 550, 1195
Van91I	CCANNNNNTGG	1 cut(s)	305
Vha464I	CTTAAG	1 cut(s)	1049
VneI	GTGCAC	1 cut(s)	16
XapI	RAATTY	1 cut(s)	909
XceI	RCATGY	2 cut(s)	127, 1058
XcmI	CCANNNNNNNNNTGG	1 cut(s)	17
XspI	CTAG	2 cut(s)	321, 1266
Zsp2I	ATGCAT	1 cut(s)	1025

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.