Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0013735

Physical Location & Seq

Genomic Coordinates Forward (+)

25938350 .. 25940400

Gene Structure 2051 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG220000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGTCTGTTAAGCCAACTAAAGGAGATGCTGTACTTTTCTGGAGCATGGGTCTGGATGGCCAATCAGATCCAAATAGCATACATGCAGGGTGCGAGGTGCTAGCTGGGGAAAAGTGGTCAGCCACAAAATGGATGAGCTGGTCAATTAAGCTCAAAGAGATCCTTCTGAAAAAGAAGTTGGAACTGGAGGAGGTATGCAGACAGTCTCCTCCAGGTTTAAGTTCTTCTATTCAGTACAAGCTGACAAAACGCCAAGCACAGGAGGAGATCCAAAGGTGCACTGGTGCTGTGGTGATAACAAGGGGCAAGTATCATCCACCAAATGCGTCAACTGATGGTGAAAAGCCATTATATCTTCATATTTCTGCAGGGGCTAATATAGGCATGTTGAAGAGCTCGTGTAAATTGGCAATCAAACAACTGAAGTCATGGATGAAGCCAGAGAAGGCTAAAACTTCAATAACCACTTTCCCTTCCTCAGCTGAAATAGTGTCTGAGCCTCTTGGTGTTGTTCTAATAATTTCAGCATGGAATTATCCTTTCTTGTTGTCCCTTGATCCAGTTGTTGGAGCCATTGCAGCTAGTAATGCTGTAGTTCTAAAACCATCAGAACTTGCTCCTGCCACATCGTCATTGCTTGCAAAACTTTTAGGAGAGTATATGGATAGCTCTTCTGTGAGAGTTGTTGAGGGGGCTGTTGCTGAAACATCTGCACTACTGGAGCAGAAGTGGGACAAAATATGTTACACAGGTACTTATTTTCCTCACTTTGTAGTCTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004028 GO:0004029 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005794 GO:0005911 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009269 GO:0009414 GO:0009415 GO:0009506 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0012505 GO:0016020 GO:0016491 GO:0016620 GO:0016903 GO:0030054 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0055044 GO:0055114 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldedh

Protein Analysis

260

Amino Acids

28.35

Weight (kDa)

8.83

Isoelectric Point (pI)

44.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_12	PF23469	75 - 128	1.1e-19	KH-domain
Aldedh	PF00171	131 - 251	8.5e-19	Aldehyde dehydrogenase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013735)

Species	Orthologous Gene IDs
malus_domestica	MD00G1029200.v1.1
pyrus_communis	pycom08g13770
rosa_chinensis	RchiOBHm_Chr6g0296181
rosa_multiflora	Rmu_co8154236.1_g000001 Rmu_co8256199.1_g000001 Rmu_sc0007413.1_g000001 Rmu_sc0019544.1_g000004
rosa_roxburghii	Rroxscaffold_7G00171770 Rroxscaffold_7G00178280
rosa_rugosa	Rorug04G0204800 Rorug06G0259000 Rorug06G0259100
rosa_samantha	Rh4BG268200 Rh4CG279300 Rh5AG220000 Rh7AG088400
rosa_wichuraiana	Rw2G019540 Rw4G035980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	129, 566
AclWI	GGATC	4 cut(s)	62, 154, 262, 551
AcoI	YGGCCR	1 cut(s)	58
AcuI	CTGAAG	1 cut(s)	443
AfaI	GTAC	3 cut(s)	33, 236, 754
AfiI	CCNNNNNNNGG	4 cut(s)	20, 129, 259, 566
AgsI	TTSAA	2 cut(s)	391, 459
AjnI	CCWGG	1 cut(s)	211
AjuI	GAANNNNNNNTTGG	2 cut(s)	161, 193
AluBI	AGCT	8 cut(s)	104, 138, 151, 241, 396, 482, 581, 669
AluI	AGCT	8 cut(s)	104, 138, 151, 241, 396, 482, 581, 669
Alw21I	GWGCWC	2 cut(s)	281, 398
Alw26I	GTCTC	1 cut(s)	210
Alw44I	GTGCAC	1 cut(s)	277
AlwI	GGATC	4 cut(s)	62, 154, 262, 551
AoxI	GGCC	1 cut(s)	58
ApaLI	GTGCAC	1 cut(s)	277
ApeKI	GCWGC	1 cut(s)	578
AsuHPI	GGTGA	2 cut(s)	304, 350
AsuNHI	GCTAGC	1 cut(s)	100
BaeGI	GKGCMC	1 cut(s)	281
BalI	TGGCCA	1 cut(s)	60
BanII	GRGCYC	1 cut(s)	398
BauI	CACGAG	1 cut(s)	397
Bbv12I	GWGCWC	2 cut(s)	281, 398
BbvCI	CCTCAGC	1 cut(s)	478
BbvI	GCAGC	1 cut(s)	590
BccI	CCATC	3 cut(s)	50, 329, 613
BciT130I	CCWGG	1 cut(s)	213
BcoDI	GTCTC	1 cut(s)	210
BfaI	CTAG	2 cut(s)	101, 582
BfmI	CTRYAG	2 cut(s)	366, 591
BisI	GCNGC	1 cut(s)	579
BlsI	GCNGC	1 cut(s)	580
Bme1390I	CCNGG	1 cut(s)	213
BmiI	GGNNCC	1 cut(s)	571
BmrFI	CCNGG	1 cut(s)	213
BmsI	GCATC	1 cut(s)	16
BmtI	GCTAGC	1 cut(s)	104
BpmI	CTGGAG	4 cut(s)	61, 195, 206, 740
Bpu10I	CCTNAGC	1 cut(s)	478
BsaXI	ACNNNNNCTCC	6 cut(s)	15, 34, 45, 64, 713, 743
Bsc4I	CCNNNNNNNGG	4 cut(s)	20, 129, 259, 566
Bse1I	ACTGG	4 cut(s)	189, 286, 560, 723
Bse3DI	GCAATG	2 cut(s)	573, 632
BseBI	CCWGG	1 cut(s)	213
BseGI	GGATG	4 cut(s)	61, 138, 313, 438
BseLI	CCNNNNNNNGG	4 cut(s)	20, 129, 259, 566
BseMI	GCAATG	2 cut(s)	573, 632
BseMII	CTCAG	2 cut(s)	486, 492
BseNI	ACTGG	4 cut(s)	189, 286, 560, 723
BseRI	GAGGAG	3 cut(s)	198, 203, 278
BseSI	GKGCMC	1 cut(s)	281
BseXI	GCAGC	1 cut(s)	590
BseYI	CCCAGC	1 cut(s)	104
BsgI	GTGCAG	1 cut(s)	696
BshFI	GGCC	1 cut(s)	60
BsiHKAI	GWGCWC	2 cut(s)	281, 398
BslFI	GGGAC	2 cut(s)	535, 746
BslI	CCNNNNNNNGG	4 cut(s)	20, 129, 259, 566
BsmAI	GTCTC	1 cut(s)	210
BsmFI	GGGAC	2 cut(s)	535, 746
BsnI	GGCC	1 cut(s)	60
Bsp1286I	GDGCHC	2 cut(s)	281, 398
Bsp143I	GATC	4 cut(s)	67, 159, 267, 556
BspANI	GGCC	1 cut(s)	60
BspCNI	CTCAG	2 cut(s)	487, 491
BspLI	GGNNCC	1 cut(s)	571
BspMAI	CTGCAG	1 cut(s)	370
BspOI	GCTAGC	1 cut(s)	104
BspPI	GGATC	4 cut(s)	62, 154, 262, 551
BspQI	GCTCTTC	2 cut(s)	386, 676
BsrDI	GCAATG	2 cut(s)	573, 632
BsrI	ACTGG	4 cut(s)	189, 286, 560, 723
BssMI	GATC	4 cut(s)	67, 159, 267, 556
BssSI	CACGAG	1 cut(s)	397
Bst2BI	CACGAG	1 cut(s)	397
Bst2UI	CCWGG	1 cut(s)	213
Bst4CI	ACNGT	1 cut(s)	204
Bst6I	CTCTTC	2 cut(s)	386, 676
BstC8I	GCNNGC	2 cut(s)	102, 639
BstDEI	CTNAG	2 cut(s)	478, 495
BstF5I	GGATG	4 cut(s)	61, 138, 313, 438
BstKTI	GATC	4 cut(s)	70, 162, 270, 559
BstMAI	GTCTC	1 cut(s)	210
BstMBI	GATC	4 cut(s)	67, 159, 267, 556
BstMWI	GCNNNNNNNGC	2 cut(s)	578, 587
BstNI	CCWGG	1 cut(s)	213
BstNSI	RCATGY	2 cut(s)	86, 388
BstSCI	CCNGG	1 cut(s)	211
BstSFI	CTRYAG	2 cut(s)	366, 591
BstSLI	GKGCMC	1 cut(s)	281
BstV1I	GCAGC	1 cut(s)	590
BstX2I	RGATCY	3 cut(s)	67, 159, 267
BstYI	RGATCY	3 cut(s)	67, 159, 267
BsuRI	GGCC	1 cut(s)	60
BtsCI	GGATG	4 cut(s)	61, 138, 313, 438
BtsIMutI	CAGTG	1 cut(s)	279
Cac8I	GCNNGC	2 cut(s)	102, 639
CseI	GACGC	1 cut(s)	315
Csp6I	GTAC	3 cut(s)	32, 235, 753
CviAII	CATG	5 cut(s)	46, 83, 385, 429, 528
CviQI	GTAC	3 cut(s)	32, 235, 753
DdeI	CTNAG	2 cut(s)	478, 495
DpnI	GATC	4 cut(s)	69, 161, 269, 558
DpnII	GATC	4 cut(s)	67, 159, 267, 556
EaeI	YGGCCR	1 cut(s)	58
Eam1104I	CTCTTC	2 cut(s)	386, 676
EarI	CTCTTC	2 cut(s)	386, 676
Ecl136II	GAGCTC	1 cut(s)	396
Eco24I	GRGCYC	1 cut(s)	398
Eco53kI	GAGCTC	1 cut(s)	396
Eco57I	CTGAAG	1 cut(s)	443
EcoICRI	GAGCTC	1 cut(s)	396
EcoRII	CCWGG	1 cut(s)	211
EcoT38I	GRGCYC	1 cut(s)	398
FaeI	CATG	5 cut(s)	49, 86, 388, 432, 531
FalI	AAGNNNNNCTT	2 cut(s)	147, 179
FaqI	GGGAC	2 cut(s)	535, 746
FatI	CATG	5 cut(s)	45, 82, 384, 428, 527
Fnu4HI	GCNGC	1 cut(s)	579
FokI	GGATG	4 cut(s)	68, 145, 300, 445
FriOI	GRGCYC	1 cut(s)	398
Fsp4HI	GCNGC	1 cut(s)	579
FspBI	CTAG	2 cut(s)	101, 582
GluI	GCNGC	1 cut(s)	579
GsaI	CCCAGC	1 cut(s)	108
GsuI	CTGGAG	4 cut(s)	61, 195, 206, 740
HaeIII	GGCC	1 cut(s)	60
HgaI	GACGC	1 cut(s)	315
Hin1II	CATG	5 cut(s)	49, 86, 388, 432, 531
HincII	GTYRAC	1 cut(s)	330
HindII	GTYRAC	1 cut(s)	330
HphI	GGTGA	2 cut(s)	304, 350
Hpy166II	GTNNAC	2 cut(s)	279, 330
Hpy188I	TCNGA	4 cut(s)	67, 168, 496, 610
Hpy188III	TCNNGA	2 cut(s)	40, 53
Hpy8I	GTNNAC	2 cut(s)	279, 330
HpyAV	CCTTC	3 cut(s)	173, 439, 483
HpyCH4III	ACNGT	1 cut(s)	204
HpyCH4V	TGCA	7 cut(s)	86, 198, 279, 368, 578, 641, 713
HpyF10VI	GCNNNNNNNGC	2 cut(s)	578, 587
HpyF3I	CTNAG	2 cut(s)	478, 495
Hsp92II	CATG	5 cut(s)	49, 86, 388, 432, 531
Kzo9I	GATC	4 cut(s)	67, 159, 267, 556
LguI	GCTCTTC	2 cut(s)	386, 676
LmnI	GCTCC	4 cut(s)	42, 569, 622, 721
Lsp1109I	GCAGC	1 cut(s)	590
LweI	GCATC	1 cut(s)	16
MaeI	CTAG	2 cut(s)	101, 582
MaeIII	GTNAC	1 cut(s)	743
MalI	GATC	4 cut(s)	69, 161, 269, 558
MboI	GATC	4 cut(s)	67, 159, 267, 556
MboII	GAAGA	4 cut(s)	216, 347, 403, 663
MflI	RGATCY	3 cut(s)	67, 159, 267
MhlI	GDGCHC	2 cut(s)	281, 398
MlsI	TGGCCA	1 cut(s)	60
MluCI	AATT	4 cut(s)	144, 404, 519, 532
MluNI	TGGCCA	1 cut(s)	60
MmeI	TCCRAC	2 cut(s)	159, 547
MnlI	CCTC	9 cut(s)	88, 181, 184, 219, 256, 487, 510, 682, 774
Mox20I	TGGCCA	1 cut(s)	60
MscI	TGGCCA	1 cut(s)	60
MseI	TTAA	4 cut(s)	9, 147, 218, 781
Msp20I	TGGCCA	1 cut(s)	60
MspA1I	CMGCKG	1 cut(s)	482
MspR9I	CCNGG	1 cut(s)	213
MvaI	CCWGG	1 cut(s)	213
MwoI	GCNNNNNNNGC	2 cut(s)	578, 587
NdeII	GATC	4 cut(s)	67, 159, 267, 556
NheI	GCTAGC	1 cut(s)	100
NlaIII	CATG	5 cut(s)	49, 86, 388, 432, 531
NlaIV	GGNNCC	1 cut(s)	571
NspI	RCATGY	2 cut(s)	86, 388
PciSI	GCTCTTC	2 cut(s)	386, 676
PflMI	CCANNNNNTGG	2 cut(s)	129, 566
PkrI	GCNGC	1 cut(s)	580
Psp124BI	GAGCTC	1 cut(s)	398
Psp6I	CCWGG	1 cut(s)	211
PspFI	CCCAGC	1 cut(s)	104
PspGI	CCWGG	1 cut(s)	211
PspN4I	GGNNCC	1 cut(s)	571
PstI	CTGCAG	1 cut(s)	370
PsuI	RGATCY	3 cut(s)	67, 159, 267
PvuII	CAGCTG	1 cut(s)	482
RsaI	GTAC	3 cut(s)	33, 236, 754
RsaNI	GTAC	3 cut(s)	32, 235, 753
SacI	GAGCTC	1 cut(s)	398
SapI	GCTCTTC	2 cut(s)	386, 676
SaqAI	TTAA	4 cut(s)	9, 147, 218, 781
SatI	GCNGC	1 cut(s)	579
Sau3AI	GATC	4 cut(s)	67, 159, 267, 556
ScrFI	CCNGG	1 cut(s)	213
SduI	GDGCHC	2 cut(s)	281, 398
SfaNI	GCATC	1 cut(s)	16
SfcI	CTRYAG	2 cut(s)	366, 591
Sse9I	AATT	4 cut(s)	144, 404, 519, 532
SspMI	CTAG	2 cut(s)	101, 582
SstI	GAGCTC	1 cut(s)	398
StyD4I	CCNGG	1 cut(s)	211
TaaI	ACNGT	1 cut(s)	204
TasI	AATT	4 cut(s)	144, 404, 519, 532
TatI	WGTACW	2 cut(s)	31, 234
Tru1I	TTAA	4 cut(s)	9, 147, 218, 781
Tru9I	TTAA	4 cut(s)	9, 147, 218, 781
TscAI	CASTG	1 cut(s)	286
TseI	GCWGC	1 cut(s)	578
TspDTI	ATGAA	2 cut(s)	347, 449
TspRI	CASTG	1 cut(s)	286
Van91I	CCANNNNNTGG	2 cut(s)	129, 566
VneI	GTGCAC	1 cut(s)	277
XceI	RCATGY	2 cut(s)	86, 388
XcmI	CCANNNNNNNNNTGG	1 cut(s)	278
XspI	CTAG	2 cut(s)	101, 582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.