Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019544.1

Orthogroup ID

OG0013735

Physical Location & Seq

Genomic Coordinates Reverse (-)

13402 .. 13698

Gene Structure 297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019544.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

atggacacggcggaggtggtgcagaaggtggtgttcgattcgggagaggcggcgacgatggtggaggagctgagggcgagttataggtctgggaagacgaggagctacgagtggagagtgtcgcagttgcagaagctggagaaagtgacggagtttcatgaacaggatatcgttgaggccctcaggtcggacctgtctaaaccggaattcgaagccttcgttcaagaggctatcagaatttccaaaaatccagtctttcaattgaaagaatttcaggtacgtatttatctattttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004028 GO:0004029 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005794 GO:0005911 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009269 GO:0009414 GO:0009415 GO:0009506 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0012505 GO:0016020 GO:0016491 GO:0016620 GO:0016903 GO:0030054 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0055044 GO:0055114 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldedh

Protein Analysis

98

Amino Acids

11.51

Weight (kDa)

5.22

Isoelectric Point (pI)

36.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013735)

Species	Orthologous Gene IDs
malus_domestica	MD00G1029200.v1.1
pyrus_communis	pycom08g13770
rosa_chinensis	RchiOBHm_Chr6g0296181
rosa_multiflora	Rmu_co8154236.1_g000001 Rmu_co8256199.1_g000001 Rmu_sc0007413.1_g000001 Rmu_sc0019544.1_g000004
rosa_roxburghii	Rroxscaffold_7G00171770 Rroxscaffold_7G00178280
rosa_rugosa	Rorug04G0204800 Rorug06G0259000 Rorug06G0259100
rosa_samantha	Rh4BG268200 Rh4CG279300 Rh5AG220000 Rh7AG088400
rosa_wichuraiana	Rw2G019540 Rw4G035980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	11, 50
AcsI	RAATTY	3 cut(s)	206, 237, 269
AfaI	GTAC	1 cut(s)	279
AfiI	CCNNNNNNNGG	1 cut(s)	187
AgsI	TTSAA	3 cut(s)	224, 260, 265
AluBI	AGCT	3 cut(s)	70, 105, 136
AluI	AGCT	3 cut(s)	70, 105, 136
AlwNI	CAGNNNCTG	1 cut(s)	136
AoxI	GGCC	1 cut(s)	177
ApoI	RAATTY	3 cut(s)	206, 237, 269
ArsI	GACNNNNNNTTYG	2 cut(s)	237, 269
AspS9I	GGNCC	2 cut(s)	178, 190
AsuII	TTCGAA	1 cut(s)	210
AvaII	GGWCC	1 cut(s)	190
AxyI	CCTNAGG	1 cut(s)	182
BbsI	GAAGAC	1 cut(s)	101
BbvCI	CCTCAGC	1 cut(s)	71
BccI	CCATC	1 cut(s)	52
BceAI	ACGGC	1 cut(s)	24
BisI	GCNGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	52
Bme18I	GGWCC	1 cut(s)	190
BmgT120I	GGNCC	2 cut(s)	178, 190
BpiI	GAAGAC	1 cut(s)	101
BpmI	CTGGAG	1 cut(s)	158
Bpu10I	CCTNAGC	1 cut(s)	71
Bpu14I	TTCGAA	1 cut(s)	210
BsaAI	YACGTR	1 cut(s)	281
BsaWI	WCCGGW	1 cut(s)	202
Bsc4I	CCNNNNNNNGG	1 cut(s)	187
Bse1I	ACTGG	1 cut(s)	251
Bse21I	CCTNAGG	1 cut(s)	182
BseLI	CCNNNNNNNGG	1 cut(s)	187
BseMII	CTCAG	2 cut(s)	62, 196
BseNI	ACTGG	1 cut(s)	251
BseRI	GAGGAG	2 cut(s)	80, 115
BsgI	GTGCAG	1 cut(s)	41
BshFI	GGCC	1 cut(s)	179
BsiSI	CCGG	1 cut(s)	203
BslI	CCNNNNNNNGG	1 cut(s)	187
BsnI	GGCC	1 cut(s)	179
Bsp119I	TTCGAA	1 cut(s)	210
BspACI	CCGC	2 cut(s)	11, 50
BspANI	GGCC	1 cut(s)	179
BspCNI	CTCAG	2 cut(s)	63, 195
BspHI	TCATGA	1 cut(s)	157
BspT104I	TTCGAA	1 cut(s)	210
BsrI	ACTGG	1 cut(s)	251
BstBAI	YACGTR	1 cut(s)	281
BstBI	TTCGAA	1 cut(s)	210
BstDEI	CTNAG	2 cut(s)	71, 182
BstSNI	TACGTA	1 cut(s)	281
BstV2I	GAAGAC	1 cut(s)	101
Bsu36I	CCTNAGG	1 cut(s)	182
BsuRI	GGCC	1 cut(s)	179
CaiI	CAGNNNCTG	1 cut(s)	136
CciI	TCATGA	1 cut(s)	157
Cfr13I	GGNCC	2 cut(s)	178, 190
Csp6I	GTAC	1 cut(s)	278
CviAII	CATG	1 cut(s)	158
CviJI	RGCY	6 cut(s)	70, 105, 136, 179, 215, 230
CviKI_1	RGCY	6 cut(s)	70, 105, 136, 179, 215, 230
CviQI	GTAC	1 cut(s)	278
DdeI	CTNAG	2 cut(s)	71, 182
EciI	GGCGGA	1 cut(s)	26
Eco105I	TACGTA	1 cut(s)	281
Eco32I	GATATC	1 cut(s)	169
Eco47I	GGWCC	1 cut(s)	190
Eco81I	CCTNAGG	1 cut(s)	182
EcoO109I	RGGNCCY	1 cut(s)	178
EcoRI	GAATTC	1 cut(s)	206
EcoRV	GATATC	1 cut(s)	169
FaeI	CATG	1 cut(s)	161
FaiI	YATR	2 cut(s)	84, 159
FatI	CATG	1 cut(s)	157
Fnu4HI	GCNGC	1 cut(s)	51
Fsp4HI	GCNGC	1 cut(s)	51
GluI	GCNGC	1 cut(s)	51
GsuI	CTGGAG	1 cut(s)	158
HaeIII	GGCC	1 cut(s)	179
HapII	CCGG	1 cut(s)	203
Hin1II	CATG	1 cut(s)	161
HinfI	GANTC	1 cut(s)	38
HpaII	CCGG	1 cut(s)	203
Hpy188I	TCNGA	2 cut(s)	190, 236
Hpy188III	TCNNGA	3 cut(s)	42, 158, 224
Hpy99I	CGWCG	1 cut(s)	58
HpyAV	CCTTC	2 cut(s)	19, 226
HpyCH4IV	ACGT	1 cut(s)	280
HpyCH4V	TGCA	2 cut(s)	22, 130
HpyF3I	CTNAG	2 cut(s)	71, 182
HpySE526I	ACGT	1 cut(s)	280
Hsp92II	CATG	1 cut(s)	161
LmnI	GCTCC	2 cut(s)	67, 102
LpnPI	CCDG	8 cut(s)	75, 122, 149, 169, 206, 216, 260, 264
MaeII	ACGT	1 cut(s)	280
MaeIII	GTNAC	1 cut(s)	145
MboII	GAAGA	1 cut(s)	106
MfeI	CAATTG	1 cut(s)	260
MluCI	AATT	4 cut(s)	206, 237, 260, 269
MmeI	TCCRAC	1 cut(s)	168
MnlI	CCTC	8 cut(s)	7, 40, 58, 66, 93, 169, 191, 220
MspI	CCGG	1 cut(s)	203
MunI	CAATTG	1 cut(s)	260
NlaIII	CATG	1 cut(s)	161
NmuCI	GTSAC	1 cut(s)	145
NspV	TTCGAA	1 cut(s)	210
PagI	TCATGA	1 cut(s)	157
PcsI	WCGNNNNNNNCGW	1 cut(s)	216
PfeI	GAWTC	1 cut(s)	38
PkrI	GCNGC	1 cut(s)	52
Ppu21I	YACGTR	1 cut(s)	281
PspPI	GGNCC	2 cut(s)	178, 190
PstNI	CAGNNNCTG	1 cut(s)	136
RsaI	GTAC	1 cut(s)	279
RsaNI	GTAC	1 cut(s)	278
SatI	GCNGC	1 cut(s)	51
Sau96I	GGNCC	2 cut(s)	178, 190
SfuI	TTCGAA	1 cut(s)	210
SinI	GGWCC	1 cut(s)	190
SnaBI	TACGTA	1 cut(s)	281
Sse9I	AATT	4 cut(s)	206, 237, 260, 269
SsiI	CCGC	2 cut(s)	11, 50
TaiI	ACGT	1 cut(s)	283
TaqI	TCGA	2 cut(s)	36, 210
TasI	AATT	4 cut(s)	206, 237, 260, 269
TauI	GCSGC	1 cut(s)	53
TfiI	GAWTC	1 cut(s)	38
TseFI	GTSAC	1 cut(s)	145
Tsp45I	GTSAC	1 cut(s)	145
TspDTI	ATGAA	2 cut(s)	146, 174
TspGWI	ACGGA	1 cut(s)	164
VpaK11BI	GGWCC	1 cut(s)	190
XapI	RAATTY	3 cut(s)	206, 237, 269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.