Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0013735

Physical Location & Seq

Genomic Coordinates Forward (+)

40641220 .. 40644826

Gene Structure 3607 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0259100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2838 bp

ATGAGGATTGCCGAGATATCAACGCCGGAGCTCCGGCAAAGCCACAACGACTCCCCCTCCCAATCGCAACCACATCAGCACCTGATCTCCCAGATCGAATCCTCAATCAAGCAAACCGAGAACCTCTCTCCTGAAAAACTCATACCGGACACAATTTCCGGCGATCTCCGGCGAGCCTTGACTCAATTGAGCCACCACGCTCCCTTCCCCAACTCTCTCAAGCTCGTTATCTGGAAACTCAGTTATCGCCTCTGGAACGCCTGCGTCGATCTCTCCAACACCACCTCCCTCCGCTCCCTCCCTTCCTCCAAAGCCGAAGAGCACGCCAAGCTCCGCCACATCGCCGCCGACCTACTCTGCGTCGCCGGTGAAGTGTCCGGCGTTCCTTCCCCGGCAATCAAGTCCGCCTCCTTCTACCACAAGACCGGAGTCAAATGGCACGAGCTCCGGAAATTCGACCTCGCTTCGTCGTGCTTCGAGAAAGCGACCGATCTCCTCTCGAAGATCGAAATCAGCACGGTCTCCGACTCCGGAGAGAAGAAGCTATTTCTGGATTTGAGGATCGCCAGGTCAAGAACTGCCTGGGAAGTATCGGACCGGAATCTCGCGGTGGCGCTGCTGAACCGGGCCAAGAGCTTGCTATTCGGGTCGCCGGATCACTACAAAACCCTAGCCAATCAGTACTCGATGTTCGGAAAGAGCGCGCTGTCCAATAGCGAGAGTAGTTCTCTGAACGAAGCGTTGAAGCTCATGAACGAGGCTCTGGAGCTCTACGAGACGGGATTGCGTGCGGCGAGGACACGCGACGAGACGGTGGATCTCAAGGCGTTAAGGTCGAAGACGCTCCGGTTCATCTCGGCCGTTCATTTGCAGATGAACGAGTTCGAGAGCGTGATCAAATGCGTGAGGGTGTTGAGAGAAGGCGACGCAGGTGATCAGCACCCTAGCCTTCCGGTGATGGCAATGAAGGCGTGGTTGGGGCTGGGGAAGTACGGCGAGGCGGAGAAGGAGCTCAGGGGCATGGTGGTAAATGAAGGTATTCCTGAGGGCGCTTGGGTGTCGGCGGTGGAGGCCTACTTTGAGTCAGCCGGGACGGCTGGAGCAGAGACGGCGAAGGGAGTGTTTTTGGGGCTGCTTGGGAGGTGCCACGTCAGCGCCAGCGCGGCGGTTAGGGTTTCTCACAGGGTTCTTGGGGAGAGTTGCAGCGAGGGATCAAAAGTGAGGGCTAAGGTGGTGTCGGAGCTTGTATCGGACGATAGAGTGGTGGCTCTCTTCTCCGGTGAGTCAGCTGCCAAGCAGAGGACTGCAATGCATTCTGTGCTTTGGAATTGTGCTGCTGATCATTTCCGGCTAAAGGATTATGTAACAAGTGCAGACCTGTTTGAGAAAGCAATGCTTTATATTCCATTCGACATAGAGAATCGAATTCTCCGAGCCAAGGGCTTCAGAGTTTTGTGTCTCTGCCACCTAGGTCTTTCCCACCTTGATCAAGCTCAAGAATACATTAACGAGGCTGAAAAGCTTGAACCTAACATAGCTTCCGCTTTCCTGAAGTACAAGATTTATCTTCAGAAGAAAGACCAGGATGGGGCTACTACTCAGATTCAGGCAATGACAACCTGCCTTGATTTTACGCCAGACTTTCTCTCCCTTGCAGCCCATGAAGCTGTTGCCTGCCGTGCTCTATCTATTGCTGTTGCTGCTCTATCAAGTCTGCTGAACTTTTATGCCACAGGAAAATCCATGCCAACAAGTGAAGTCGTAGTTCTGCGCACCTTGGTCACAATCCTTACTCAAGAACCTGGGAATGAGCTTGAAGCCCTCAAGTTTGTTAAGCGTGTACATAACCGGGCATCTGAGCTTGGGTCTAATTGCTTTTTTGGGACAGGGGAGGTTGGAAGACGGGAAAGGAATTGGTTTGCTGTGACTTCATGGAACCTTGGGACGAAAACTGGCACTGAGAAAAATTATGAATTATGTGCCGAATTCTATAGACTGGCATCAGAATTTTATTGTCTTCTGGTTGATGGGCAGGTAGGAGAAAACATGGTCTGCAAAGCACTGATACTGACTATATCTGCAATTATAGCTTCAGAAAATCAGAAGAAGACTACATTGCCTGAAAGTGAAGTGAAACAAGCTGTACAGCTTCTAGATAGAGCAGGGAAGATACTGAAGTCAACCTTACCAGGGAATCAACTTAGCGGTGATCCAGTTACCACCATTGAACCTGACCTATACTTCATCTACACCTTTTGTGCCTATGACATATATGGAAGGCTCAATGATTCAGGATTACAGCTACAACTTGTGAAGACTTTTGCTAGTTCAAAGGCCTGCAATCCCAAGTTCCTCCTTCAGATTGGCCTCACTGCTTCACAAGGCCCACAGTCCAATCACAAAGTAGCGACCTTTGCTCTAAATGAATGCCTCTCGGTTTTCCTCTCTTCCTCCTCTCCAGACTACCAAAATGTGGCTCTGATTGTCCGGAAGCTCATTGCTGTGACCAGCATTCACAAAGGTGATACAGATGATGATGCTGTGTATAATATGTACAAGCAAGCTTACAGAATTATGGTGGGACTGAAGGACAGTGAGTATCCGACTGAAGAGGGAAAATGGCTAGCGATGACTGCATGGAATAGGGCATCAGTGCCTGTGAGGCTTGGCCAGATTGATGCGGCAAGGAAATGGATGGATGTCGGTATGCAGCTAGCTAAGCATGTTAATGGAATGGAGACTTATAGGGCATGCATGGAGGATTTCATTACCAGCTTTGAGAAGAAATTTGGTGCCCCAAATGATGGCGTAATTAACAGACCTCAGCTAGTAGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004028 GO:0004029 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0005794 GO:0005911 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009269 GO:0009414 GO:0009415 GO:0009506 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0012505 GO:0016020 GO:0016491 GO:0016620 GO:0016903 GO:0030054 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0055044 GO:0055114 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00053 ko00071 ko00280 ko00310 ko00330 ko00340 ko00380 ko00410 ko00561 ko00620 ko00625 ko00903 ko00981 ko01100 ko01110 ko01120 ko01130 map00010 map00053 map00071 map00280 map00310 map00330 map00340 map00380 map00410 map00561 map00620 map00625 map00903 map00981 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Aldedh

Protein Analysis

945

Amino Acids

104.51

Weight (kDa)

7.77

Isoelectric Point (pI)

43.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPO22	PF08631	193 - 465	2.8e-36	Meiosis protein SPO22/ZIP4 like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013735)

Species	Orthologous Gene IDs
malus_domestica	MD00G1029200.v1.1
pyrus_communis	pycom08g13770
rosa_chinensis	RchiOBHm_Chr6g0296181
rosa_multiflora	Rmu_co8154236.1_g000001 Rmu_co8256199.1_g000001 Rmu_sc0007413.1_g000001 Rmu_sc0019544.1_g000004
rosa_roxburghii	Rroxscaffold_7G00171770 Rroxscaffold_7G00178280
rosa_rugosa	Rorug04G0204800 Rorug06G0259000 Rorug06G0259100
rosa_samantha	Rh4BG268200 Rh4CG279300 Rh5AG220000 Rh7AG088400
rosa_wichuraiana	Rw2G019540 Rw4G035980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	920
Acc16I	TGCGCA	1 cut(s)	1772
Acc36I	ACCTGC	3 cut(s)	920, 1628, 2023
AccB1I	GGYRCC	2 cut(s)	1143, 2792
AccB7I	CCANNNNNTGG	2 cut(s)	2473, 2804
AccBSI	CCGCTC	1 cut(s)	294
AccII	CGCG	4 cut(s)	608, 704, 804, 1163
AccIII	TCCGGA	3 cut(s)	447, 530, 2487
AclWI	GGATC	5 cut(s)	569, 663, 825, 1219, 2204
AcoI	YGGCCR	2 cut(s)	858, 2668
AcsI	RAATTY	5 cut(s)	452, 1425, 1985, 2006, 2786
AcuI	CTGAAG	8 cut(s)	1429, 1553, 1571, 2076, 2195, 2342, 2606, 2628
AfaI	GTAC	6 cut(s)	683, 992, 1556, 1842, 2145, 2555
AfiI	CCNNNNNNNGG	7 cut(s)	1299, 1354, 1438, 1588, 2190, 2473, 2804
AgsI	TTSAA	5 cut(s)	745, 1526, 1817, 2228, 2331
AjiI	CACGTC	1 cut(s)	1150
AjnI	CCWGG	5 cut(s)	566, 581, 1581, 1801, 2188
AjuI	GAANNNNNNNTTGG	2 cut(s)	959, 991
AleI	CACNNNNGTG	1 cut(s)	2520
Alw21I	GWGCWC	6 cut(s)	33, 324, 447, 771, 1014, 1684
Alw26I	GTCTC	6 cut(s)	526, 770, 803, 1100, 1463, 2732
AlwI	GGATC	5 cut(s)	569, 663, 825, 1219, 2204
AlwNI	CAGNNNCTG	2 cut(s)	82, 2657
Aor13HI	TCCGGA	3 cut(s)	447, 530, 2487
AoxI	GGCC	7 cut(s)	627, 858, 1071, 2334, 2365, 2383, 2668
ApeKI	GCWGC	8 cut(s)	616, 1132, 1203, 1289, 1334, 1655, 1700, 2710
ApoI	RAATTY	5 cut(s)	452, 1425, 1985, 2006, 2786
Asp700I	GAANNNNTTC	2 cut(s)	881, 1038
AspA2I	CCTAGG	1 cut(s)	1468
AspLEI	GCGC	7 cut(s)	616, 704, 706, 1052, 1157, 1163, 1773
AspS9I	GGNCC	3 cut(s)	595, 627, 2384
AsuC2I	CCSGG	4 cut(s)	392, 626, 1090, 1850
AsuHPI	GGTGA	6 cut(s)	380, 944, 967, 1292, 2219, 2534
AsuNHI	GCTAGC	2 cut(s)	2623, 2713
AvaII	GGWCC	1 cut(s)	595
AvrII	CCTAGG	1 cut(s)	1468
AxyI	CCTNAGG	1 cut(s)	1044
BaeGI	GKGCMC	1 cut(s)	2797
BaeI	ACNNNNGTAYC	2 cut(s)	2162, 2195
BalI	TGGCCA	1 cut(s)	2670
BanI	GGYRCC	2 cut(s)	1143, 2792
BanII	GRGCYC	4 cut(s)	33, 447, 771, 1014
BauI	CACGAG	1 cut(s)	440
BbsI	GAAGAC	5 cut(s)	845, 1906, 2009, 2114, 2321
Bbv12I	GWGCWC	6 cut(s)	33, 324, 447, 771, 1014, 1684
BbvCI	CCTCAGC	1 cut(s)	2823
BbvI	GCAGC	8 cut(s)	603, 1119, 1215, 1276, 1321, 1667, 1687, 2722
BccI	CCATC	5 cut(s)	952, 1580, 2021, 2689, 2798
BceAI	ACGGC	5 cut(s)	845, 1009, 1110, 1125, 1662
BciT130I	CCWGG	5 cut(s)	568, 583, 1583, 1803, 2190
BciVI	GTATCC	1 cut(s)	2610
BclI	TGATCA	4 cut(s)	894, 934, 1339, 1486
BcnI	CCSGG	4 cut(s)	392, 626, 1090, 1850
BcoDI	GTCTC	6 cut(s)	526, 770, 803, 1100, 1463, 2732
BfaI	CTAG	9 cut(s)	671, 945, 1469, 2153, 2325, 2624, 2714, 2828, 2836
BfmI	CTRYAG	1 cut(s)	1990
BfoI	RGCGCY	3 cut(s)	617, 1053, 1158
BfuAI	ACCTGC	3 cut(s)	920, 1628, 2023
BfuI	GTATCC	1 cut(s)	2610
BglI	GCCNNNNNGGC	3 cut(s)	1094, 1163, 2662
BlnI	CCTAGG	1 cut(s)	1468
BlpI	GCTNAGC	1 cut(s)	2718
BmcAI	AGTACT	1 cut(s)	683
Bme1390I	CCNGG	9 cut(s)	392, 568, 583, 626, 1090, 1583, 1803, 1850, 2190
Bme18I	GGWCC	1 cut(s)	595
BmgBI	CACGTC	1 cut(s)	1150
BmgT120I	GGNCC	3 cut(s)	595, 627, 2384
BmiI	GGNNCC	3 cut(s)	1145, 1937, 2794
BmrFI	CCNGG	9 cut(s)	392, 568, 583, 626, 1090, 1583, 1803, 1850, 2190
BmsI	GCATC	5 cut(s)	1862, 2009, 2527, 2657, 2668
BmtI	GCTAGC	2 cut(s)	2627, 2717
BoxI	GACNNNNGTC	1 cut(s)	428
BpiI	GAAGAC	5 cut(s)	845, 1906, 2009, 2114, 2321
BplI	GAGNNNNNCTC	4 cut(s)	110, 142, 712, 744
BpmI	CTGGAG	3 cut(s)	785, 1119, 2442
Bpu10I	CCTNAGC	3 cut(s)	1013, 1227, 2823
Bpu1102I	GCTNAGC	1 cut(s)	2718
BpuEI	CTTGAG	5 cut(s)	203, 806, 1479, 1779, 1808
BpuMI	CCSGG	4 cut(s)	392, 626, 1090, 1850
BsaBI	GATNNNNATC	1 cut(s)	509
BsaI	GGTCTC	1 cut(s)	526
BsaJI	CCNNGG	8 cut(s)	390, 582, 1437, 1468, 1776, 1802, 1939, 2189
BsaWI	WCCGGW	9 cut(s)	145, 425, 447, 530, 597, 846, 952, 1277, 2487
Bsc4I	CCNNNNNNNGG	7 cut(s)	1299, 1354, 1438, 1588, 2190, 2473, 2804
Bse118I	RCCGGY	1 cut(s)	365
Bse1I	ACTGG	3 cut(s)	1957, 2001, 2213
Bse21I	CCTNAGG	1 cut(s)	1044
Bse3DI	GCAATG	6 cut(s)	969, 1314, 1398, 1617, 2114, 2496
Bse8I	GATNNNNATC	1 cut(s)	509
BseAI	TCCGGA	3 cut(s)	447, 530, 2487
BseBI	CCWGG	5 cut(s)	568, 583, 1583, 1803, 2190
BseDI	CCNNGG	8 cut(s)	390, 582, 1437, 1468, 1776, 1802, 1939, 2189
BseGI	GGATG	3 cut(s)	1591, 2700, 2704
BseJI	GATNNNNATC	1 cut(s)	509
BseLI	CCNNNNNNNGG	7 cut(s)	1299, 1354, 1438, 1588, 2190, 2473, 2804
BseMI	GCAATG	6 cut(s)	969, 1314, 1398, 1617, 2114, 2496
BseMII	CTCAG	7 cut(s)	253, 1027, 1035, 1613, 1848, 1950, 2837
BseNI	ACTGG	3 cut(s)	1957, 2001, 2213
BsePI	GCGCGC	1 cut(s)	702
BseRI	GAGGAG	2 cut(s)	485, 2443
BseSI	GKGCMC	1 cut(s)	2797
BseX3I	CGGCCG	1 cut(s)	858
BseXI	GCAGC	8 cut(s)	603, 1119, 1215, 1276, 1321, 1667, 1687, 2722
BseYI	CCCAGC	1 cut(s)	982
BsgI	GTGCAG	1 cut(s)	1392
Bsh1236I	CGCG	4 cut(s)	608, 704, 804, 1163
Bsh1285I	CGRYCG	2 cut(s)	489, 861
BshFI	GGCC	7 cut(s)	629, 860, 1073, 2336, 2367, 2385, 2670
BshNI	GGYRCC	2 cut(s)	1143, 2792
BsiEI	CGRYCG	2 cut(s)	489, 861
BsiHKAI	GWGCWC	6 cut(s)	33, 324, 447, 771, 1014, 1684
BslFI	GGGAC	4 cut(s)	1105, 1897, 1957, 2595
BslI	CCNNNNNNNGG	7 cut(s)	1299, 1354, 1438, 1588, 2190, 2473, 2804
BsmAI	GTCTC	6 cut(s)	526, 770, 803, 1100, 1463, 2732
BsmBI	CGTCTC	3 cut(s)	770, 803, 1100
BsmFI	GGGAC	4 cut(s)	1105, 1897, 1957, 2595
BsmI	GAATGC	3 cut(s)	1312, 2432, 2511
BsnI	GGCC	7 cut(s)	629, 860, 1073, 2336, 2367, 2385, 2670
Bso31I	GGTCTC	1 cut(s)	526
Bsp1286I	GDGCHC	7 cut(s)	33, 324, 447, 771, 1014, 1684, 2797
Bsp13I	TCCGGA	3 cut(s)	447, 530, 2487
Bsp1407I	TGTACA	3 cut(s)	1840, 2143, 2553
Bsp1720I	GCTNAGC	1 cut(s)	2718
BspANI	GGCC	7 cut(s)	629, 860, 1073, 2336, 2367, 2385, 2670
BspCNI	CTCAG	7 cut(s)	252, 1026, 1036, 1612, 1849, 1951, 2836
BspEI	TCCGGA	3 cut(s)	447, 530, 2487
BspFNI	CGCG	4 cut(s)	608, 704, 804, 1163
BspHI	TCATGA	1 cut(s)	750
BspLI	GGNNCC	3 cut(s)	1145, 1937, 2794
BspMI	ACCTGC	3 cut(s)	920, 1628, 2023
BspOI	GCTAGC	2 cut(s)	2627, 2717
BspPI	GGATC	5 cut(s)	569, 663, 825, 1219, 2204
BspQI	GCTCTTC	1 cut(s)	312
BspT107I	GGYRCC	2 cut(s)	1143, 2792
BspTNI	GGTCTC	1 cut(s)	526
BsrBI	CCGCTC	1 cut(s)	294
BsrDI	GCAATG	6 cut(s)	969, 1314, 1398, 1617, 2114, 2496
BsrFI	RCCGGY	1 cut(s)	365
BsrGI	TGTACA	3 cut(s)	1840, 2143, 2553
BsrI	ACTGG	3 cut(s)	1957, 2001, 2213
BssAI	RCCGGY	1 cut(s)	365
BssECI	CCNNGG	8 cut(s)	390, 582, 1437, 1468, 1776, 1802, 1939, 2189
BssHII	GCGCGC	1 cut(s)	702
BssSI	CACGAG	1 cut(s)	440
BssT1I	CCWWGG	4 cut(s)	1437, 1468, 1776, 1939
Bst2BI	CACGAG	1 cut(s)	440
Bst2UI	CCWGG	5 cut(s)	568, 583, 1583, 1803, 2190
Bst4CI	ACNGT	4 cut(s)	520, 814, 2391, 2594
Bst6I	CTCTTC	4 cut(s)	312, 1277, 2452, 2604
BstAPI	GCANNNNNTGC	1 cut(s)	1318
BstAUI	TGTACA	3 cut(s)	1840, 2143, 2553
BstF5I	GGATG	3 cut(s)	1591, 2700, 2704
BstFNI	CGCG	4 cut(s)	608, 704, 804, 1163
BstH2I	RGCGCY	3 cut(s)	617, 1053, 1158
BstHHI	GCGC	7 cut(s)	616, 704, 706, 1052, 1157, 1163, 1773
BstMAI	GTCTC	6 cut(s)	526, 770, 803, 1100, 1463, 2732
BstMCI	CGRYCG	2 cut(s)	489, 861
BstNI	CCWGG	5 cut(s)	568, 583, 1583, 1803, 2190
BstNSI	RCATGY	2 cut(s)	2726, 2754
BstPAI	GACNNNNGTC	1 cut(s)	428
BstSCI	CCNGG	9 cut(s)	390, 566, 581, 624, 1088, 1581, 1801, 1848, 2188
BstSFI	CTRYAG	1 cut(s)	1990
BstSLI	GKGCMC	1 cut(s)	2797
BstUI	CGCG	4 cut(s)	608, 704, 804, 1163
BstV1I	GCAGC	8 cut(s)	603, 1119, 1215, 1276, 1321, 1667, 1687, 2722
BstV2I	GAAGAC	5 cut(s)	845, 1906, 2009, 2114, 2321
BstX2I	RGATCY	1 cut(s)	817
BstYI	RGATCY	1 cut(s)	817
BstZI	CGGCCG	1 cut(s)	858
Bsu36I	CCTNAGG	1 cut(s)	1044
BsuI	GTATCC	1 cut(s)	2610
BsuRI	GGCC	7 cut(s)	629, 860, 1073, 2336, 2367, 2385, 2670
BtgZI	GCGATG	2 cut(s)	325, 2642
BtrI	CACGTC	1 cut(s)	1150
BtsCI	GGATG	3 cut(s)	1591, 2700, 2704
BtsI	GCAGTG	1 cut(s)	2370
BtsIMutI	CAGTG	5 cut(s)	1956, 2060, 2370, 2599, 2658
BveI	ACCTGC	3 cut(s)	920, 1628, 2023
CaiI	CAGNNNCTG	2 cut(s)	82, 2657
CciI	TCATGA	1 cut(s)	750
CfoI	GCGC	7 cut(s)	616, 704, 706, 1052, 1157, 1163, 1773
Cfr10I	RCCGGY	1 cut(s)	365
Cfr13I	GGNCC	3 cut(s)	595, 627, 2384
CpoI	CGGWCCG	1 cut(s)	595
CseI	GACGC	4 cut(s)	253, 349, 850, 935
Csp6I	GTAC	6 cut(s)	682, 991, 1555, 1841, 2144, 2554
CspI	CGGWCCG	1 cut(s)	595
CviQI	GTAC	6 cut(s)	682, 991, 1555, 1841, 2144, 2554
EaeI	YGGCCR	2 cut(s)	858, 2668
EagI	CGGCCG	1 cut(s)	858
Eam1104I	CTCTTC	4 cut(s)	312, 1277, 2452, 2604
EarI	CTCTTC	4 cut(s)	312, 1277, 2452, 2604
EciI	GGCGGA	3 cut(s)	323, 394, 1016
Ecl136II	GAGCTC	4 cut(s)	31, 445, 769, 1012
EclXI	CGGCCG	1 cut(s)	858
Eco130I	CCWWGG	4 cut(s)	1437, 1468, 1776, 1939
Eco147I	AGGCCT	2 cut(s)	1073, 2336
Eco24I	GRGCYC	4 cut(s)	33, 447, 771, 1014
Eco31I	GGTCTC	1 cut(s)	526
Eco32I	GATATC	1 cut(s)	18
Eco47I	GGWCC	1 cut(s)	595
Eco52I	CGGCCG	1 cut(s)	858
Eco53kI	GAGCTC	4 cut(s)	31, 445, 769, 1012
Eco57I	CTGAAG	8 cut(s)	1429, 1553, 1571, 2076, 2195, 2342, 2606, 2628
Eco81I	CCTNAGG	1 cut(s)	1044
EcoICRI	GAGCTC	4 cut(s)	31, 445, 769, 1012
EcoRI	GAATTC	2 cut(s)	1425, 1985
EcoRII	CCWGG	5 cut(s)	566, 581, 1581, 1801, 2188
EcoRV	GATATC	1 cut(s)	18
EcoT14I	CCWWGG	4 cut(s)	1437, 1468, 1776, 1939
EcoT22I	ATGCAT	2 cut(s)	1314, 2756
EcoT38I	GRGCYC	4 cut(s)	33, 447, 771, 1014
ErhI	CCWWGG	4 cut(s)	1437, 1468, 1776, 1939
Esp3I	CGTCTC	3 cut(s)	770, 803, 1100
FalI	AAGNNNNNCTT	4 cut(s)	1380, 1412, 2168, 2200
FaqI	GGGAC	4 cut(s)	1105, 1897, 1957, 2595
FbaI	TGATCA	4 cut(s)	894, 934, 1339, 1486
FokI	GGATG	3 cut(s)	1598, 2707, 2711
FriOI	GRGCYC	4 cut(s)	33, 447, 771, 1014
FspBI	CTAG	9 cut(s)	671, 945, 1469, 2153, 2325, 2624, 2714, 2828, 2836
FspI	TGCGCA	1 cut(s)	1772
GlaI	GCGC	7 cut(s)	615, 703, 705, 1051, 1156, 1162, 1772
GsaI	CCCAGC	1 cut(s)	986
GsuI	CTGGAG	3 cut(s)	785, 1119, 2442
HaeII	RGCGCY	3 cut(s)	617, 1053, 1158
HaeIII	GGCC	7 cut(s)	629, 860, 1073, 2336, 2367, 2385, 2670
HgaI	GACGC	4 cut(s)	253, 349, 850, 935
HhaI	GCGC	7 cut(s)	616, 704, 706, 1052, 1157, 1163, 1773
Hin6I	GCGC	7 cut(s)	614, 702, 704, 1050, 1155, 1161, 1771
HinP1I	GCGC	7 cut(s)	614, 702, 704, 1050, 1155, 1161, 1771
HincII	GTYRAC	1 cut(s)	2181
HindII	GTYRAC	1 cut(s)	2181
HindIII	AAGCTT	2 cut(s)	1520, 2562
HphI	GGTGA	6 cut(s)	380, 944, 967, 1292, 2219, 2534
Hpy166II	GTNNAC	2 cut(s)	1841, 2181
Hpy8I	GTNNAC	2 cut(s)	1841, 2181
Hpy99I	CGWCG	5 cut(s)	269, 365, 472, 809, 929
HpyCH4III	ACNGT	4 cut(s)	520, 814, 2391, 2594
HpyCH4IV	ACGT	1 cut(s)	1149
HpySE526I	ACGT	1 cut(s)	1149
HspAI	GCGC	7 cut(s)	614, 702, 704, 1050, 1155, 1161, 1771
Kpn2I	TCCGGA	3 cut(s)	447, 530, 2487
Ksp22I	TGATCA	4 cut(s)	894, 934, 1339, 1486
LguI	GCTCTTC	1 cut(s)	312
Lsp1109I	GCAGC	8 cut(s)	603, 1119, 1215, 1276, 1321, 1667, 1687, 2722
LweI	GCATC	5 cut(s)	1862, 2009, 2527, 2657, 2668
MaeI	CTAG	9 cut(s)	671, 945, 1469, 2153, 2325, 2624, 2714, 2828, 2836
MaeII	ACGT	1 cut(s)	1149
MaeIII	GTNAC	5 cut(s)	1363, 1780, 1924, 2215, 2503
MbiI	CCGCTC	1 cut(s)	294
MfeI	CAATTG	1 cut(s)	185
MflI	RGATCY	1 cut(s)	817
MhlI	GDGCHC	7 cut(s)	33, 324, 447, 771, 1014, 1684, 2797
MlsI	TGGCCA	1 cut(s)	2670
MluNI	TGGCCA	1 cut(s)	2670
MlyI	GAGTC	6 cut(s)	44, 175, 438, 521, 1091, 1292
MmeI	TCCRAC	5 cut(s)	300, 549, 1218, 1876, 2627
Mox20I	TGGCCA	1 cut(s)	2670
Mph1103I	ATGCAT	2 cut(s)	1314, 2756
MroI	TCCGGA	3 cut(s)	447, 530, 2487
MroXI	GAANNNNTTC	2 cut(s)	881, 1038
MscI	TGGCCA	1 cut(s)	2670
MseI	TTAA	5 cut(s)	830, 1506, 1833, 2727, 2814
MslI	CAYNNNNRTG	3 cut(s)	2501, 2520, 2727
Msp20I	TGGCCA	1 cut(s)	2670
MspA1I	CMGCKG	1 cut(s)	1289
MspR9I	CCNGG	9 cut(s)	392, 568, 583, 626, 1090, 1583, 1803, 1850, 2190
MunI	CAATTG	1 cut(s)	185
Mva1269I	GAATGC	3 cut(s)	1312, 2432, 2511
MvaI	CCWGG	5 cut(s)	568, 583, 1583, 1803, 2190
MvnI	CGCG	4 cut(s)	608, 704, 804, 1163
NciI	CCSGG	4 cut(s)	392, 626, 1090, 1850
NheI	GCTAGC	2 cut(s)	2623, 2713
NlaIV	GGNNCC	3 cut(s)	1145, 1937, 2794
NmeAIII	GCCGAG	2 cut(s)	37, 836
NmuCI	GTSAC	3 cut(s)	1780, 1924, 2503
NsbI	TGCGCA	1 cut(s)	1772
NsiI	ATGCAT	2 cut(s)	1314, 2756
NspI	RCATGY	2 cut(s)	2726, 2754
OliI	CACNNNNGTG	1 cut(s)	2520
PaeI	GCATGC	1 cut(s)	2754
PagI	TCATGA	1 cut(s)	750
PaqCI	CACCTGC	1 cut(s)	920
PauI	GCGCGC	1 cut(s)	702
PceI	AGGCCT	2 cut(s)	1073, 2336
PciSI	GCTCTTC	1 cut(s)	312
PcsI	WCGNNNNNNNCGW	2 cut(s)	264, 1429
PctI	GAATGC	3 cut(s)	1312, 2432, 2511
PdmI	GAANNNNTTC	2 cut(s)	881, 1038
PfeI	GAWTC	6 cut(s)	98, 601, 1420, 1603, 2194, 2288
PflMI	CCANNNNNTGG	2 cut(s)	2473, 2804
PleI	GAGTC	6 cut(s)	44, 175, 437, 521, 1090, 1291
PpsI	GAGTC	6 cut(s)	44, 175, 437, 521, 1090, 1291
PshAI	GACNNNNGTC	1 cut(s)	428
Psp124BI	GAGCTC	4 cut(s)	33, 447, 771, 1014
Psp6I	CCWGG	5 cut(s)	566, 581, 1581, 1801, 2188
PspFI	CCCAGC	1 cut(s)	982
PspGI	CCWGG	5 cut(s)	566, 581, 1581, 1801, 2188
PspN4I	GGNNCC	3 cut(s)	1145, 1937, 2794
PspPI	GGNCC	3 cut(s)	595, 627, 2384
PsrI	GAACNNNNNNTAC	2 cut(s)	674, 706
PstNI	CAGNNNCTG	2 cut(s)	82, 2657
PsuI	RGATCY	1 cut(s)	817
PteI	GCGCGC	1 cut(s)	702
PvuII	CAGCTG	1 cut(s)	1289
RsaI	GTAC	6 cut(s)	683, 992, 1556, 1842, 2145, 2555
RsaNI	GTAC	6 cut(s)	682, 991, 1555, 1841, 2144, 2554
RseI	CAYNNNNRTG	3 cut(s)	2501, 2520, 2727
Rsr2I	CGGWCCG	1 cut(s)	595
RsrII	CGGWCCG	1 cut(s)	595
SacI	GAGCTC	4 cut(s)	33, 447, 771, 1014
SapI	GCTCTTC	1 cut(s)	312
SaqAI	TTAA	5 cut(s)	830, 1506, 1833, 2727, 2814
Sau96I	GGNCC	3 cut(s)	595, 627, 2384
ScaI	AGTACT	1 cut(s)	683
SchI	GAGTC	6 cut(s)	44, 175, 438, 521, 1091, 1292
ScrFI	CCNGG	9 cut(s)	392, 568, 583, 626, 1090, 1583, 1803, 1850, 2190
SduI	GDGCHC	7 cut(s)	33, 324, 447, 771, 1014, 1684, 2797
SfaNI	GCATC	5 cut(s)	1862, 2009, 2527, 2657, 2668
SfcI	CTRYAG	1 cut(s)	1990
SgrAI	CRCCGGYG	1 cut(s)	365
SinI	GGWCC	1 cut(s)	595
SmiMI	CAYNNNNRTG	3 cut(s)	2501, 2520, 2727
SmlI	CTYRAG	5 cut(s)	218, 821, 1494, 1794, 1823
SmoI	CTYRAG	5 cut(s)	218, 821, 1494, 1794, 1823
SphI	GCATGC	1 cut(s)	2754
SseBI	AGGCCT	2 cut(s)	1073, 2336
SspMI	CTAG	9 cut(s)	671, 945, 1469, 2153, 2325, 2624, 2714, 2828, 2836
SstI	GAGCTC	4 cut(s)	33, 447, 771, 1014
StuI	AGGCCT	2 cut(s)	1073, 2336
StyD4I	CCNGG	9 cut(s)	390, 566, 581, 624, 1088, 1581, 1801, 1848, 2188
StyI	CCWWGG	4 cut(s)	1437, 1468, 1776, 1939
TaaI	ACNGT	4 cut(s)	520, 814, 2391, 2594
TaiI	ACGT	1 cut(s)	1152
TaqII	GACCGA	1 cut(s)	503
TatI	WGTACW	5 cut(s)	681, 1554, 1840, 2143, 2553
TauI	GCSGC	4 cut(s)	347, 794, 1166, 2684
TfiI	GAWTC	6 cut(s)	98, 601, 1420, 1603, 2194, 2288
Tru1I	TTAA	5 cut(s)	830, 1506, 1833, 2727, 2814
Tru9I	TTAA	5 cut(s)	830, 1506, 1833, 2727, 2814
TscAI	CASTG	5 cut(s)	1963, 2067, 2377, 2599, 2658
TseFI	GTSAC	3 cut(s)	1780, 1924, 2503
TseI	GCWGC	8 cut(s)	616, 1132, 1203, 1289, 1334, 1655, 1700, 2710
Tsp45I	GTSAC	3 cut(s)	1780, 1924, 2503
TspRI	CASTG	5 cut(s)	1963, 2067, 2377, 2599, 2658
Van91I	CCANNNNNTGG	2 cut(s)	2473, 2804
VpaK11BI	GGWCC	1 cut(s)	595
XapI	RAATTY	5 cut(s)	452, 1425, 1985, 2006, 2786
XbaI	TCTAGA	1 cut(s)	2152
XceI	RCATGY	2 cut(s)	2726, 2754
XmaJI	CCTAGG	1 cut(s)	1468
XmnI	GAANNNNTTC	2 cut(s)	881, 1038
XspI	CTAG	9 cut(s)	671, 945, 1469, 2153, 2325, 2624, 2714, 2828, 2836
ZrmI	AGTACT	1 cut(s)	683
Zsp2I	ATGCAT	2 cut(s)	1314, 2756

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.