Rroxscaffold_7G00171770

Belongs to the aldehyde dehydrogenase family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
12048711 .. 12049330
620 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00171770.1

Sequence Viewer

Length: 270 bp
ATGGACACGGCGGAGGTGGTGCAGAAGGTGGTGTTCGATTCGGGAGAGGCGGCGGCGATGGTGGAGGAGCTGAGGGCGAGTTATAGGTCTGGGAAGACGATGAGCTACGAGTGGAGAGTGTCGCAGTTGCAGAAGCTGGAGAAGGTGACGGAGTTTCATGAACAGGAAATCGTTGAGGCCCTCCGGTCCGACCTGTCCAAACCGGAATTCGAAGCCTTCGTTCAAGAGGTCCGGTTCTTTGCGAACATGACCCCGGTTCAATCCTGTTAA

Protein Analysis

89

Amino Acids

10.25

Weight (kDa)

4.73

Isoelectric Point (pI)

51.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 11, 50, 53
AcsI RAATTY 1 cut(s) 206
AgsI TTSAA 2 cut(s) 224, 260
AjuI GAANNNNNNNTTGG 2 cut(s) 191, 223
AluBI AGCT 3 cut(s) 70, 105, 136
AluI AGCT 3 cut(s) 70, 105, 136
AlwNI CAGNNNCTG 1 cut(s) 136
AoxI GGCC 1 cut(s) 177
ApoI RAATTY 1 cut(s) 206
AspS9I GGNCC 3 cut(s) 178, 186, 229
AsuC2I CCSGG 1 cut(s) 254
AsuHPI GGTGA 1 cut(s) 157
AsuII TTCGAA 1 cut(s) 210
AvaII GGWCC 2 cut(s) 186, 229
BbsI GAAGAC 1 cut(s) 101
BbvCI CCTCAGC 1 cut(s) 71
BccI CCATC 1 cut(s) 52
BceAI ACGGC 1 cut(s) 24
BcnI CCSGG 1 cut(s) 254
BisI GCNGC 2 cut(s) 51, 54
BlsI GCNGC 2 cut(s) 52, 55
Bme1390I CCNGG 1 cut(s) 254
Bme18I GGWCC 2 cut(s) 186, 229
BmgT120I GGNCC 3 cut(s) 178, 186, 229
BmrFI CCNGG 1 cut(s) 254
BpiI GAAGAC 1 cut(s) 101
BpmI CTGGAG 1 cut(s) 158
Bpu10I CCTNAGC 1 cut(s) 71
Bpu14I TTCGAA 1 cut(s) 210
BpuMI CCSGG 1 cut(s) 254
BsaJI CCNNGG 1 cut(s) 252
BsaWI WCCGGW 3 cut(s) 183, 202, 231
BseDI CCNNGG 1 cut(s) 252
BseMII CTCAG 1 cut(s) 62
BseRI GAGGAG 1 cut(s) 80
BsgI GTGCAG 1 cut(s) 41
BshFI GGCC 1 cut(s) 179
BsiSI CCGG 4 cut(s) 184, 203, 232, 254
BsnI GGCC 1 cut(s) 179
Bsp119I TTCGAA 1 cut(s) 210
BspACI CCGC 3 cut(s) 11, 50, 53
BspANI GGCC 1 cut(s) 179
BspCNI CTCAG 1 cut(s) 63
BspHI TCATGA 1 cut(s) 157
BspT104I TTCGAA 1 cut(s) 210
BssECI CCNNGG 1 cut(s) 252
BstBI TTCGAA 1 cut(s) 210
BstDEI CTNAG 1 cut(s) 71
BstSCI CCNGG 1 cut(s) 252
BstV2I GAAGAC 1 cut(s) 101
BsuRI GGCC 1 cut(s) 179
BtgZI GCGATG 1 cut(s) 71
CaiI CAGNNNCTG 1 cut(s) 136
CciI TCATGA 1 cut(s) 157
Cfr13I GGNCC 3 cut(s) 178, 186, 229
CpoI CGGWCCG 1 cut(s) 186
CspI CGGWCCG 1 cut(s) 186
CviAII CATG 2 cut(s) 158, 247
CviJI RGCY 5 cut(s) 70, 105, 136, 179, 215
CviKI_1 RGCY 5 cut(s) 70, 105, 136, 179, 215
DdeI CTNAG 1 cut(s) 71
EciI GGCGGA 1 cut(s) 26
Eco47I GGWCC 2 cut(s) 186, 229
EcoO109I RGGNCCY 1 cut(s) 178
EcoRI GAATTC 1 cut(s) 206
FaeI CATG 2 cut(s) 161, 250
FaiI YATR 3 cut(s) 84, 159, 248
FatI CATG 2 cut(s) 157, 246
Fnu4HI GCNGC 2 cut(s) 51, 54
Fsp4HI GCNGC 2 cut(s) 51, 54
GluI GCNGC 2 cut(s) 51, 54
GsuI CTGGAG 1 cut(s) 158
HaeIII GGCC 1 cut(s) 179
HapII CCGG 4 cut(s) 184, 203, 232, 254
Hin1II CATG 2 cut(s) 161, 250
HinfI GANTC 1 cut(s) 38
HpaII CCGG 4 cut(s) 184, 203, 232, 254
HphI GGTGA 1 cut(s) 157
Hpy188I TCNGA 1 cut(s) 190
Hpy188III TCNNGA 3 cut(s) 42, 158, 224
HpyAV CCTTC 3 cut(s) 19, 136, 226
HpyCH4V TGCA 2 cut(s) 22, 130
HpyF3I CTNAG 1 cut(s) 71
Hsp92II CATG 2 cut(s) 161, 250
LmnI GCTCC 1 cut(s) 67
LpnPI CCDG 7 cut(s) 75, 122, 149, 197, 206, 216, 245
MaeIII GTNAC 1 cut(s) 145
MboII GAAGA 1 cut(s) 106
MluCI AATT 1 cut(s) 206
MmeI TCCRAC 1 cut(s) 213
MnlI CCTC 7 cut(s) 7, 40, 58, 66, 169, 191, 220
MseI TTAA 1 cut(s) 268
MspI CCGG 4 cut(s) 184, 203, 232, 254
MspR9I CCNGG 1 cut(s) 254
NciI CCSGG 1 cut(s) 254
NlaIII CATG 2 cut(s) 161, 250
NmuCI GTSAC 1 cut(s) 145
NspV TTCGAA 1 cut(s) 210
PagI TCATGA 1 cut(s) 157
PcsI WCGNNNNNNNCGW 1 cut(s) 216
PfeI GAWTC 1 cut(s) 38
PkrI GCNGC 2 cut(s) 52, 55
PspPI GGNCC 3 cut(s) 178, 186, 229
PstNI CAGNNNCTG 1 cut(s) 136
Rsr2I CGGWCCG 1 cut(s) 186
RsrII CGGWCCG 1 cut(s) 186
SaqAI TTAA 1 cut(s) 268
SatI GCNGC 2 cut(s) 51, 54
Sau96I GGNCC 3 cut(s) 178, 186, 229
ScrFI CCNGG 1 cut(s) 254
SetI ASST 9 cut(s) 18, 30, 72, 89, 107, 138, 147, 195, 231
SfuI TTCGAA 1 cut(s) 210
SinI GGWCC 2 cut(s) 186, 229
Sse9I AATT 1 cut(s) 206
SsiI CCGC 3 cut(s) 11, 50, 53
StyD4I CCNGG 1 cut(s) 252
TaqI TCGA 2 cut(s) 36, 210
TasI AATT 1 cut(s) 206
TauI GCSGC 2 cut(s) 53, 56
TfiI GAWTC 1 cut(s) 38
Tru1I TTAA 1 cut(s) 268
Tru9I TTAA 1 cut(s) 268
TseFI GTSAC 1 cut(s) 145
Tsp45I GTSAC 1 cut(s) 145
TspDTI ATGAA 2 cut(s) 146, 174
TspGWI ACGGA 1 cut(s) 164
VpaK11BI GGWCC 2 cut(s) 186, 229
XapI RAATTY 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.