Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0014814

Physical Location & Seq

Genomic Coordinates Forward (+)

8458604 .. 8460108

Gene Structure 1505 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1021400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGTGCTTCATTATTGGCATCTTCGTCGAACTTCTAGGATGCTTGTGCAATCCATTTTGTGTTGTTTACTTTGTGAATTCTGGGACAGAAGCAAATGAATTAGCAATGCTGATGGCTTGTCTATACAGTGGTAGTCTCGATATGATTTCGTTGAGAAATGCATATCATGGGGGAAGTTCGAACACAATTGGTTTGACGGCTTTAAACACATGGAAGTATCCAATTCCACAGATCTTTGGCTCTGATGCCAACAGTTATGCTAAAGATGTACAAGATCACATTGACTATGGAACTTCAGGAAAAGTTGCTGGGTTTATATCTGAAACAATACAGGGAGTTGGAGGAGCAGTTGAACTGGCCCCTGGATATTTAAAACTGGTTTATGACATTGTTTGCAAGGCTGGTGGTGTCTGCATTGCTGATGAAGTACAAACTGGATTTGGCCGCACTGGAAGCCATTATTGGGGCTTTGAAACACAGGATGTCATTCCTGATATAGTTACCATGGCCAAGGTCTTTATATTTCAACTGAGAGTTTGTCTTTTACTATTAAAAGGTTTGCATTATGTTTTTTTTGGTCTATGTCAGTACTATGTGAACTCCGCCTGTGTAAGTTTATCTTACATTGCCGGTCCCAAGCCCGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0008144 GO:0008150 GO:0008270 GO:0010035 GO:0010038 GO:0016020 GO:0019842 GO:0030170 GO:0031090 GO:0036094 GO:0042221 GO:0042802 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048037 GO:0050662 GO:0050896 GO:0070279 GO:0097159 GO:0098588 GO:0098805 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00250 ko00260 ko00270 ko00280 ko01100 ko01110 map00250 map00260 map00270 map00280 map01100 map01110

Pfam Domains

Protein Families

Aminotran_3

Protein Analysis

216

Amino Acids

23.23

Weight (kDa)

5.22

Isoelectric Point (pI)

24.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_3	PF00202	22 - 172	2.4e-25	Aminotransferase class-III

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0014814)

Species	Orthologous Gene IDs
malus_domestica	MD01G1021400.v1.1
rosa_chinensis	RchiOBHm_Chr6g0262631
rosa_multiflora	Rmu_co8495177.1_g000001
rosa_roxburghii	Rroxscaffold_1G00027120 Rroxscaffold_1G00030820 Rroxscaffold_1G00030830 Rroxscaffold_2G00107650 Rroxscaffold_2G00119820 Rroxscaffold_2G00126320 Rroxscaffold_3G00218550 Rroxscaffold_3G00218560 Rroxscaffold_4G00313930 Rroxscaffold_5G00335180 Rroxscaffold_5G00345530 Rroxscaffold_5G00350030 Rroxscaffold_5G00369130 Rroxscaffold_6G00388470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	445, 603
AcoI	YGGCCR	2 cut(s)	442, 507
AcsI	RAATTY	1 cut(s)	76
AcuI	CTGAAG	1 cut(s)	279
AfaI	GTAC	3 cut(s)	270, 429, 590
AfiI	CCNNNNNNNGG	3 cut(s)	463, 641, 642
AgsI	TTSAA	3 cut(s)	353, 473, 527
AjnI	CCWGG	1 cut(s)	361
AjuI	GAANNNNNNNTTGG	2 cut(s)	445, 477
Alw26I	GTCTC	1 cut(s)	140
Ama87I	CYCGRG	1 cut(s)	641
AoxI	GGCC	3 cut(s)	357, 442, 507
ApoI	RAATTY	1 cut(s)	76
AspS9I	GGNCC	2 cut(s)	358, 632
AsuC2I	CCSGG	2 cut(s)	642, 643
AsuII	TTCGAA	1 cut(s)	179
AvaI	CYCGRG	1 cut(s)	641
AvaII	GGWCC	1 cut(s)	632
BalI	TGGCCA	1 cut(s)	509
BccI	CCATC	1 cut(s)	106
BceAI	ACGGC	1 cut(s)	213
BcgI	CGANNNNNNTGC	2 cut(s)	7, 41
BciT130I	CCWGG	1 cut(s)	363
BciVI	GTATCC	1 cut(s)	228
BcnI	CCSGG	2 cut(s)	642, 643
BcoDI	GTCTC	1 cut(s)	140
BfaI	CTAG	1 cut(s)	35
BfuI	GTATCC	1 cut(s)	228
BglII	AGATCT	1 cut(s)	231
BisI	GCNGC	1 cut(s)	445
BlsI	GCNGC	1 cut(s)	446
BmcAI	AGTACT	1 cut(s)	590
Bme1390I	CCNGG	3 cut(s)	363, 642, 643
Bme18I	GGWCC	1 cut(s)	632
BmeT110I	CYCGRG	1 cut(s)	641
BmgT120I	GGNCC	2 cut(s)	358, 632
BmiI	GGNNCC	2 cut(s)	360, 634
BmrFI	CCNGG	3 cut(s)	363, 642, 643
BmsI	GCATC	3 cut(s)	27, 29, 235
Bpu14I	TTCGAA	1 cut(s)	179
BpuMI	CCSGG	2 cut(s)	642, 643
BsaJI	CCNNGG	4 cut(s)	361, 504, 510, 641
BsaXI	ACNNNNNCTCC	2 cut(s)	333, 363
Bsc4I	CCNNNNNNNGG	3 cut(s)	463, 641, 642
Bse118I	RCCGGY	1 cut(s)	629
Bse1I	ACTGG	4 cut(s)	360, 381, 439, 454
Bse3DI	GCAATG	3 cut(s)	111, 414, 624
BseBI	CCWGG	1 cut(s)	363
BseDI	CCNNGG	4 cut(s)	361, 504, 510, 641
BseGI	GGATG	2 cut(s)	44, 487
BseLI	CCNNNNNNNGG	3 cut(s)	463, 641, 642
BseMI	GCAATG	3 cut(s)	111, 414, 624
BseMII	CTCAG	1 cut(s)	521
BseNI	ACTGG	4 cut(s)	360, 381, 439, 454
BseRI	GAGGAG	1 cut(s)	357
BseYI	CCCAGC	1 cut(s)	308
BshFI	GGCC	3 cut(s)	359, 444, 509
BsiHKCI	CYCGRG	1 cut(s)	641
BsiSI	CCGG	2 cut(s)	630, 642
BslFI	GGGAC	2 cut(s)	97, 618
BslI	CCNNNNNNNGG	3 cut(s)	463, 641, 642
BsmAI	GTCTC	1 cut(s)	140
BsmFI	GGGAC	2 cut(s)	97, 618
BsnI	GGCC	3 cut(s)	359, 444, 509
BsoBI	CYCGRG	1 cut(s)	641
Bsp119I	TTCGAA	1 cut(s)	179
Bsp1407I	TGTACA	1 cut(s)	268
Bsp143I	GATC	2 cut(s)	231, 274
Bsp19I	CCATGG	1 cut(s)	504
BspACI	CCGC	2 cut(s)	445, 603
BspANI	GGCC	3 cut(s)	359, 444, 509
BspCNI	CTCAG	1 cut(s)	522
BspLI	GGNNCC	2 cut(s)	360, 634
BspT104I	TTCGAA	1 cut(s)	179
BsrDI	GCAATG	3 cut(s)	111, 414, 624
BsrFI	RCCGGY	1 cut(s)	629
BsrGI	TGTACA	1 cut(s)	268
BsrI	ACTGG	4 cut(s)	360, 381, 439, 454
BssAI	RCCGGY	1 cut(s)	629
BssECI	CCNNGG	4 cut(s)	361, 504, 510, 641
BssMI	GATC	2 cut(s)	231, 274
BssT1I	CCWWGG	2 cut(s)	504, 510
Bst2UI	CCWGG	1 cut(s)	363
Bst4CI	ACNGT	2 cut(s)	128, 254
BstAUI	TGTACA	1 cut(s)	268
BstBI	TTCGAA	1 cut(s)	179
BstDEI	CTNAG	1 cut(s)	530
BstDSI	CCRYGG	1 cut(s)	504
BstF5I	GGATG	2 cut(s)	44, 487
BstKTI	GATC	2 cut(s)	234, 277
BstMAI	GTCTC	1 cut(s)	140
BstMBI	GATC	2 cut(s)	231, 274
BstMWI	GCNNNNNNNGC	1 cut(s)	453
BstNI	CCWGG	1 cut(s)	363
BstSCI	CCNGG	3 cut(s)	361, 640, 641
BstX2I	RGATCY	1 cut(s)	231
BstYI	RGATCY	1 cut(s)	231
BsuI	GTATCC	1 cut(s)	228
BsuRI	GGCC	3 cut(s)	359, 444, 509
BtgI	CCRYGG	1 cut(s)	504
BtsCI	GGATG	2 cut(s)	44, 487
BtsIMutI	CAGTG	2 cut(s)	133, 447
Cfr10I	RCCGGY	1 cut(s)	629
Cfr13I	GGNCC	2 cut(s)	358, 632
Cfr9I	CCCGGG	1 cut(s)	641
Csp6I	GTAC	3 cut(s)	269, 428, 589
CspCI	CAANNNNNGTGG	2 cut(s)	385, 420
CviAII	CATG	3 cut(s)	167, 210, 505
CviQI	GTAC	3 cut(s)	269, 428, 589
DdeI	CTNAG	1 cut(s)	530
DpnI	GATC	2 cut(s)	233, 276
DpnII	GATC	2 cut(s)	231, 274
DraI	TTTAAA	2 cut(s)	204, 372
EaeI	YGGCCR	2 cut(s)	442, 507
EciI	GGCGGA	1 cut(s)	592
Eco130I	CCWWGG	2 cut(s)	504, 510
Eco47I	GGWCC	1 cut(s)	632
Eco57I	CTGAAG	1 cut(s)	279
Eco88I	CYCGRG	1 cut(s)	641
EcoRI	GAATTC	1 cut(s)	76
EcoRII	CCWGG	1 cut(s)	361
EcoT14I	CCWWGG	2 cut(s)	504, 510
EcoT22I	ATGCAT	1 cut(s)	163
ErhI	CCWWGG	2 cut(s)	504, 510
FaeI	CATG	3 cut(s)	170, 213, 508
FalI	AAGNNNNNCTT	2 cut(s)	604, 636
FaqI	GGGAC	2 cut(s)	97, 618
FatI	CATG	3 cut(s)	166, 209, 504
Fnu4HI	GCNGC	1 cut(s)	445
FokI	GGATG	2 cut(s)	51, 494
Fsp4HI	GCNGC	1 cut(s)	445
FspBI	CTAG	1 cut(s)	35
GluI	GCNGC	1 cut(s)	445
GsaI	CCCAGC	1 cut(s)	312
HaeIII	GGCC	3 cut(s)	359, 444, 509
HapII	CCGG	2 cut(s)	630, 642
Hin1II	CATG	3 cut(s)	170, 213, 508
HpaII	CCGG	2 cut(s)	630, 642
Hpy166II	GTNNAC	2 cut(s)	67, 598
Hpy188I	TCNGA	2 cut(s)	244, 322
Hpy188III	TCNNGA	3 cut(s)	137, 297, 491
Hpy8I	GTNNAC	2 cut(s)	67, 598
Hpy99I	CGWCG	1 cut(s)	29
HpyCH4III	ACNGT	2 cut(s)	128, 254
HpyCH4V	TGCA	5 cut(s)	48, 161, 396, 414, 562
HpyF10VI	GCNNNNNNNGC	1 cut(s)	453
HpyF3I	CTNAG	1 cut(s)	530
Hsp92II	CATG	3 cut(s)	170, 213, 508
Kzo9I	GATC	2 cut(s)	231, 274
LmnI	GCTCC	1 cut(s)	344
LweI	GCATC	3 cut(s)	27, 29, 235
MaeI	CTAG	1 cut(s)	35
MaeIII	GTNAC	1 cut(s)	499
MalI	GATC	2 cut(s)	233, 276
MboI	GATC	2 cut(s)	231, 274
MboII	GAAGA	1 cut(s)	13
MfeI	CAATTG	1 cut(s)	186
MflI	RGATCY	1 cut(s)	231
MlsI	TGGCCA	1 cut(s)	509
MluCI	AATT	4 cut(s)	76, 98, 186, 222
MluNI	TGGCCA	1 cut(s)	509
MmeI	TCCRAC	1 cut(s)	319
MnlI	CCTC	1 cut(s)	335
Mox20I	TGGCCA	1 cut(s)	509
Mph1103I	ATGCAT	1 cut(s)	163
MscI	TGGCCA	1 cut(s)	509
MseI	TTAA	3 cut(s)	203, 371, 551
Msp20I	TGGCCA	1 cut(s)	509
MspI	CCGG	2 cut(s)	630, 642
MspR9I	CCNGG	3 cut(s)	363, 642, 643
MunI	CAATTG	1 cut(s)	186
MvaI	CCWGG	1 cut(s)	363
MwoI	GCNNNNNNNGC	1 cut(s)	453
NciI	CCSGG	2 cut(s)	642, 643
NcoI	CCATGG	1 cut(s)	504
NdeII	GATC	2 cut(s)	231, 274
NlaIII	CATG	3 cut(s)	170, 213, 508
NlaIV	GGNNCC	2 cut(s)	360, 634
NsiI	ATGCAT	1 cut(s)	163
NspV	TTCGAA	1 cut(s)	179
PkrI	GCNGC	1 cut(s)	446
Psp6I	CCWGG	1 cut(s)	361
PspFI	CCCAGC	1 cut(s)	308
PspGI	CCWGG	1 cut(s)	361
PspN4I	GGNNCC	2 cut(s)	360, 634
PspPI	GGNCC	2 cut(s)	358, 632
PsuI	RGATCY	1 cut(s)	231
RsaI	GTAC	3 cut(s)	270, 429, 590
RsaNI	GTAC	3 cut(s)	269, 428, 589
SaqAI	TTAA	3 cut(s)	203, 371, 551
SatI	GCNGC	1 cut(s)	445
Sau3AI	GATC	2 cut(s)	231, 274
Sau96I	GGNCC	2 cut(s)	358, 632
ScaI	AGTACT	1 cut(s)	590
ScrFI	CCNGG	3 cut(s)	363, 642, 643
SetI	ASST	2 cut(s)	516, 559
SfaNI	GCATC	3 cut(s)	27, 29, 235
SfuI	TTCGAA	1 cut(s)	179
SinI	GGWCC	1 cut(s)	632
SmaI	CCCGGG	1 cut(s)	643
Sse9I	AATT	4 cut(s)	76, 98, 186, 222
SsiI	CCGC	2 cut(s)	445, 603
SspMI	CTAG	1 cut(s)	35
StyD4I	CCNGG	3 cut(s)	361, 640, 641
StyI	CCWWGG	2 cut(s)	504, 510
TaaI	ACNGT	2 cut(s)	128, 254
TaqI	TCGA	3 cut(s)	27, 138, 179
TasI	AATT	4 cut(s)	76, 98, 186, 222
TatI	WGTACW	3 cut(s)	268, 427, 588
TauI	GCSGC	1 cut(s)	447
Tru1I	TTAA	3 cut(s)	203, 371, 551
Tru9I	TTAA	3 cut(s)	203, 371, 551
TscAI	CASTG	2 cut(s)	133, 454
TspDTI	ATGAA	2 cut(s)	111, 438
TspMI	CCCGGG	1 cut(s)	641
TspRI	CASTG	2 cut(s)	133, 454
VpaK11BI	GGWCC	1 cut(s)	632
XapI	RAATTY	1 cut(s)	76
XmaI	CCCGGG	1 cut(s)	641
XspI	CTAG	1 cut(s)	35
ZrmI	AGTACT	1 cut(s)	590
Zsp2I	ATGCAT	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.